Ggra6562.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6562.t1
Unique NameGgra6562.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length165
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:275706..276200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog935839.JAGJ01000004_gene2008
PFAMsDUF1775
Max annot lvl201174|Actinobacteria
Evalue1.06e-10
EggNOG OGsCOG4549@1|root,COG4549@2|Bacteria,2HPGW@201174|Actinobacteria,4F5SS@85017|Promicromonosporaceae
DescriptionDomain of unkown function (DUF1775)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6562Ggra6562Gracilaria gracilis GNS1m malegenetig00000081_pilon 275706..276200 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6562.t1.start1Ggra6562.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 275706..275708 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6562.t1.CDS1Ggra6562.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 275706..276200 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6562.t1.exon1Ggra6562.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 275706..276200 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6562.t1.stop1Ggra6562.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 276198..276200 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6562.t1Ggra6562.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 275706..276200 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6562.t1 ID=Ggra6562.t1|Name=Ggra6562.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=165bp
MVCTKLFVVQLVVLFAAVFAHVKITPAEVPAGKSSIIQLRVSHDCGDETI
GTTNFTIVMPMKMRVTVEQDTTWRILINKNAEDDEHVTSVTYLGFLPDGF
YKLFGLRVRIPEEAAGEQLFFPSYQDCHNQGTSLAWEMIPNGNGTRLRYP
APYVNVTAGESSGH*
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spliced messenger RNA

>Ggra6562.t1 ID=Ggra6562.t1|Name=Ggra6562.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00000081_pilon:275706..276200+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTGCACTAAACTGTTTGTTGTTCAACTTGTGGTGCTGTTCGCCGC
CGTATTCGCTCACGTGAAGATCACACCAGCGGAAGTACCGGCCGGAAAGT
CGTCAATCATTCAACTGAGAGTATCCCATGACTGCGGCGATGAAACGATC
GGCACGACGAACTTCACGATTGTGATGCCGATGAAGATGAGAGTGACTGT
GGAACAGGACACGACGTGGAGGATTCTGATAAACAAGAACGCTGAGGACG
ATGAGCATGTGACGTCAGTGACGTATCTGGGATTCTTGCCGGATGGATTC
TACAAGTTGTTCGGACTGCGTGTGAGGATCCCGGAGGAAGCTGCGGGCGA
GCAGTTGTTCTTCCCGAGTTACCAGGACTGTCACAACCAGGGTACATCTC
TCGCTTGGGAAATGATTCCTAATGGAAATGGGACGAGGCTGAGGTATCCT
GCGCCGTACGTGAATGTGACGGCTGGCGAGAGCAGCGGACACTAA
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protein sequence of Ggra6562.t1

>Ggra6562.t1 ID=Ggra6562.t1|Name=Ggra6562.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=165bp
MVCTKLFVVQLVVLFAAVFAHVKITPAEVPAGKSSIIQLRVSHDCGDETI
GTTNFTIVMPMKMRVTVEQDTTWRILINKNAEDDEHVTSVTYLGFLPDGF
YKLFGLRVRIPEEAAGEQLFFPSYQDCHNQGTSLAWEMIPNGNGTRLRYP
APYVNVTAGESSGH*
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mRNA from alignment at tig00000081_pilon:275706..276200+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6562.t1 ID=Ggra6562.t1|Name=Ggra6562.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00000081_pilon:275706..276200+ (Gracilaria gracilis GNS1m male)
ATGGTGTGCACTAAACTGTTTGTTGTTCAACTTGTGGTGCTGTTCGCCGC
CGTATTCGCTCACGTGAAGATCACACCAGCGGAAGTACCGGCCGGAAAGT
CGTCAATCATTCAACTGAGAGTATCCCATGACTGCGGCGATGAAACGATC
GGCACGACGAACTTCACGATTGTGATGCCGATGAAGATGAGAGTGACTGT
GGAACAGGACACGACGTGGAGGATTCTGATAAACAAGAACGCTGAGGACG
ATGAGCATGTGACGTCAGTGACGTATCTGGGATTCTTGCCGGATGGATTC
TACAAGTTGTTCGGACTGCGTGTGAGGATCCCGGAGGAAGCTGCGGGCGA
GCAGTTGTTCTTCCCGAGTTACCAGGACTGTCACAACCAGGGTACATCTC
TCGCTTGGGAAATGATTCCTAATGGAAATGGGACGAGGCTGAGGTATCCT
GCGCCGTACGTGAATGTGACGGCTGGCGAGAGCAGCGGACACTAA
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Coding sequence (CDS) from alignment at tig00000081_pilon:275706..276200+

>Ggra6562.t1 ID=Ggra6562.t1|Name=Ggra6562.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=495bp|location=Sequence derived from alignment at tig00000081_pilon:275706..276200+ (Gracilaria gracilis GNS1m male)
ATGGTGTGCACTAAACTGTTTGTTGTTCAACTTGTGGTGCTGTTCGCCGC
CGTATTCGCTCACGTGAAGATCACACCAGCGGAAGTACCGGCCGGAAAGT
CGTCAATCATTCAACTGAGAGTATCCCATGACTGCGGCGATGAAACGATC
GGCACGACGAACTTCACGATTGTGATGCCGATGAAGATGAGAGTGACTGT
GGAACAGGACACGACGTGGAGGATTCTGATAAACAAGAACGCTGAGGACG
ATGAGCATGTGACGTCAGTGACGTATCTGGGATTCTTGCCGGATGGATTC
TACAAGTTGTTCGGACTGCGTGTGAGGATCCCGGAGGAAGCTGCGGGCGA
GCAGTTGTTCTTCCCGAGTTACCAGGACTGTCACAACCAGGGTACATCTC
TCGCTTGGGAAATGATTCCTAATGGAAATGGGACGAGGCTGAGGTATCCT
GCGCCGTACGTGAATGTGACGGCTGGCGAGAGCAGCGGACACTAA
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