Ggra6509.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6509.t1
Unique NameGgra6509.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length484
Homology
BLAST of Ggra6509.t1 vs. uniprot
Match: A0A2V3IH13 (RNA-splicing ligase RtcB homolog n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH13_9FLOR)

HSP 1 Score: 858 bits (2217), Expect = 2.770e-312
Identity = 423/481 (87.94%), Postives = 452/481 (93.97%), Query Frame = 0
Query:    1 MPNTARPKKHSKRSFDEELAYLHKISPCRYEIDVGFVPNMKTPGTFFVNELLAPLVKNELQRFCENENAGGFIPAVKQIANVASLPGIVYRSIAMPDVHSGYGFAIGNVAAFDMNDKEAVVSPGGVGFDINCGVRLIRTNLMESDVDPVKEQLAQTLFDHIPVGVGSKGIIPTTMKSLEEALELGVDWSLREGYAWPEDKEHCEEYGRMLQADPTKVSPRAKKRGLTQLGTLGAGNHYAEIQVVEEIFDHVAARKMGIGKLGQVVIMIHSGSRGLGHQVATDALQLMERAMERDGIKLNDRQLACARISSPEGQDYLKSMAAAANFAWVNRTSMTFLARQAFAKVFGKTPLELDMHLIYDVSHNIAKVETHVVDGQMKQLLVHRKGATRAFPPHHPLIPCDYQFTGQPVLVGGTMGTCSYVLLGTEQGMKETFGSTCHGAGRAQSRSASRRKLNYEEVLNNLKEKGIAIRVASPKLVTEEA 481
            M      K+  KRS++EEL++L + +PC+Y+IDVGFVPNM+ PGTFFVNE LAPLVK+ELQRFCENE+AGGFIPAVKQIANV+SLPGIV  SIAMPDVHSGYGFAIGNVAAFDMND EAVVSPGGVGFDINCGVRLIRTNLME DVD +KE LAQTLFDHIPVGVGSKGIIPTTMKSLEEALELG+DWSLREGYAWPEDKEHCEEYGRMLQADPTKVS RAKKRGLTQLGTLGAGNHYAEIQVV+EIFD +AA KMGIGK+GQVVIMIHSGSRGLGHQVATDALQ ME+AM RD IK+NDRQLACARISS EGQDYLK+MAAAANFAWVNR+SMTFLARQAFAKVF KTP ELDMH+IYDVSHNIAKVETH++DG+ KQLLVHRKGATRAFPPHHPLIPCDYQFTGQPVLVGGTMGTCSYVLLGTE+GM++TFGSTCHGAGRAQSRSA RRKLNYEEVLNNLKEKGIAIRVASPKLVTEEA
Sbjct:    1 MATKVSSKRRLKRSYEEELSFLRRTAPCQYQIDVGFVPNMRAPGTFFVNEKLAPLVKSELQRFCENESAGGFIPAVKQIANVSSLPGIVQSSIAMPDVHSGYGFAIGNVAAFDMNDDEAVVSPGGVGFDINCGVRLIRTNLMEEDVDSLKEVLAQTLFDHIPVGVGSKGIIPTTMKSLEEALELGMDWSLREGYAWPEDKEHCEEYGRMLQADPTKVSSRAKKRGLTQLGTLGAGNHYAEIQVVDEIFDDIAAHKMGIGKVGQVVIMIHSGSRGLGHQVATDALQHMEKAMARDRIKVNDRQLACARISSREGQDYLKAMAAAANFAWVNRSSMTFLARQAFAKVFEKTPAELDMHVIYDVSHNIAKVETHMIDGETKQLLVHRKGATRAFPPHHPLIPCDYQFTGQPVLVGGTMGTCSYVLLGTERGMQKTFGSTCHGAGRAQSRSACRRKLNYEEVLNNLKEKGIAIRVASPKLVTEEA 481          
BLAST of Ggra6509.t1 vs. uniprot
Match: R7QGD8 (RNA-splicing ligase RtcB homolog n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QGD8_CHOCR)

HSP 1 Score: 801 bits (2069), Expect = 1.010e-283
Identity = 392/474 (82.70%), Postives = 436/474 (91.98%), Query Frame = 0
Query:    9 KHSKRSFDEELAYLHKISPCRYEIDVGFVPNMKTPGTFFVNELLAPLVKNELQRFCENEN-AGGFIPAVKQIANVASLPGIVYRSIAMPDVHSGYGFAIGNVAAFDMNDKEAVVSPGGVGFDINCGVRLIRTNLMESDVDPVKEQLAQTLFDHIPVGVGSKGIIPTTMKSLEEALELGVDWSLREGYAWPEDKEHCEEYGRMLQADPTKVSPRAKKRGLTQLGTLGAGNHYAEIQVVEEIFDHVAARKMGIGKLGQVVIMIHSGSRGLGHQVATDALQLMERAMERDGIKLNDRQLACARISSPEGQDYLKSMAAAANFAWVNRTSMTFLARQAFAKVFGKTPLELDMHLIYDVSHNIAKVETHVVDGQMKQLLVHRKGATRAFPPHHPLIPCDYQFTGQPVLVGGTMGTCSYVLLGTEQGMKETFGSTCHGAGRAQSRSASRRKLNYEEVLNNLKEKGIAIRVASPKLVTEEA 481
            K  +R+++EEL+YL  ++PCRY+I +GFVPNM  PGTF+VNE+LAPLVK EL+R  +N + +GGF+PAVKQIANV+SLPGIV RSIAMPDVHSGYGFAIGNVAAFDM+D +AVVSPGGVGFDINCGVRL+RTNLME DV PVK+ LAQTLFDHIPVGVGSKGIIPTT++SLE ALELG+DWSLREGYAWPEDKEHCEE GRMLQADP KVS RAKKRGL+QLGTLGAGNHYAEIQ+V+EIFD  AA  MG+  +GQVV+MIHSGSRGLGHQVATDALQ ME+AM RDGI++NDRQLACARI+S EGQDYL  MAAAANFAWVNR+SMTFLARQAFAKVFGK+P ELDMH+IYDVSHNIAKVETH VDG++K+LLVHRKGATRAFPPHHPL+PCDYQ TGQPVL+GGTMGTCSYVLLGTE GMKETFGSTCHGAGRAQSRSA RR+LNYEEVLNNL+ KGIAIRVASPKLVTEEA
Sbjct:  399 KPRRRTYEEELSYLRLVAPCRYDISIGFVPNMLAPGTFYVNEVLAPLVKAELERAAKNPSLSGGFLPAVKQIANVSSLPGIVARSIAMPDVHSGYGFAIGNVAAFDMDDPQAVVSPGGVGFDINCGVRLLRTNLMEQDVQPVKDVLAQTLFDHIPVGVGSKGIIPTTIQSLEAALELGMDWSLREGYAWPEDKEHCEENGRMLQADPCKVSARAKKRGLSQLGTLGAGNHYAEIQIVDEIFDETAAAAMGVTTVGQVVVMIHSGSRGLGHQVATDALQHMEKAMARDGIEVNDRQLACARIASKEGQDYLAGMAAAANFAWVNRSSMTFLARQAFAKVFGKSPAELDMHVIYDVSHNIAKVETHNVDGKVKKLLVHRKGATRAFPPHHPLVPCDYQMTGQPVLIGGTMGTCSYVLLGTEHGMKETFGSTCHGAGRAQSRSACRRQLNYEEVLNNLEGKGIAIRVASPKLVTEEA 872          
BLAST of Ggra6509.t1 vs. uniprot
Match: A0A2P6TPW4 (RNA-splicing ligase RtcB homolog n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TPW4_CHLSO)

HSP 1 Score: 747 bits (1929), Expect = 2.860e-266
Identity = 360/469 (76.76%), Postives = 415/469 (88.49%), Query Frame = 0
Query:   13 RSFDEELAYLHKISPCRYEIDVGFVPNMKTPGTFFVNELLAPLVKNELQRFCENENAGGFIPAVKQIANVASLPGIVYRSIAMPDVHSGYGFAIGNVAAFDMNDKEAVVSPGGVGFDINCGVRLIRTNLMESDVDPVKEQLAQTLFDHIPVGVGSKGIIPTTMKSLEEALELGVDWSLREGYAWPEDKEHCEEYGRMLQADPTKVSPRAKKRGLTQLGTLGAGNHYAEIQVVEEIFDHVAARKMGIGKLGQVVIMIHSGSRGLGHQVATDALQLMERAMERDGIKLNDRQLACARISSPEGQDYLKSMAAAANFAWVNRTSMTFLARQAFAKVFGKTPLELDMHLIYDVSHNIAKVETHVVDGQMKQLLVHRKGATRAFPPHHPLIPCDYQFTGQPVLVGGTMGTCSYVLLGTEQGMKETFGSTCHGAGRAQSRSASRRKLNYEEVLNNLKEKGIAIRVASPKLVTEEA 481
            R++DEE+A++ ++SP  Y++  GFVP M  PG F+VN+ L  L+  ELQ +C+    GGF+PAVKQIANVA+LPGIV +SIA+PDVHSGYGFAIGNVAAFDM D +AVVSPGGVGFDINCGVRLIRTNL E DV+PV+EQLAQ LFDHIPVGVGS+GIIPTT K LEEALE+G+DWSLREGY+W EDKEHCEEYGRML ADP+KVS RAKKRGL Q+GTLGAGNHYAEIQV++E+FD VAARKMGI ++GQV IMIHSGSRGLGHQVATDAL  ME+AM RDGI  NDRQLACARI+S EGQDYL +MA AAN+AWVNR+SMTFL RQAFAK+FG+TP +LDMH++YDVSHNIAKVE H+VDGQ+K LLVHRKG+TRAFPPHHPLIP DYQ TGQPVL+GGTMGTCSYVL GTE+GM+ETFGSTCHGAGRA+SR+ SR KL+Y++VL+ LK KGI+IRVASPKLV EEA
Sbjct:    8 RTYDEEMAFIDQLSPYHYKVRTGFVPGMHVPGVFYVNDRLRGLLFEELQAYCQRGEHGGFLPAVKQIANVAALPGIVRKSIALPDVHSGYGFAIGNVAAFDMADPQAVVSPGGVGFDINCGVRLIRTNLTEKDVEPVREQLAQALFDHIPVGVGSQGIIPTTAKDLEEALEMGMDWSLREGYSWAEDKEHCEEYGRMLNADPSKVSARAKKRGLPQMGTLGAGNHYAEIQVIDEVFDRVAARKMGIDQVGQVCIMIHSGSRGLGHQVATDALVAMEKAMARDGIVTNDRQLACARINSQEGQDYLTAMACAANYAWVNRSSMTFLCRQAFAKMFGQTPDDLDMHVVYDVSHNIAKVEEHMVDGQLKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMEETFGSTCHGAGRARSRNNSRNKLDYQQVLDALKAKGISIRVASPKLVMEEA 476          
BLAST of Ggra6509.t1 vs. uniprot
Match: A0A5B8MFK2 (RNA-splicing ligase RtcB homolog n=2 Tax=Chloropicon TaxID=2302914 RepID=A0A5B8MFK2_9CHLO)

HSP 1 Score: 740 bits (1911), Expect = 8.220e-266
Identity = 361/473 (76.32%), Postives = 407/473 (86.05%), Query Frame = 0
Query:    9 KHSKRSFDEELAYLHKISPCRYEIDVGFVPNMKTPGTFFVNELLAPLVKNELQRFCENENAGGFIPAVKQIANVASLPGIVYRSIAMPDVHSGYGFAIGNVAAFDMNDKEAVVSPGGVGFDINCGVRLIRTNLMESDVDPVKEQLAQTLFDHIPVGVGSKGIIPTTMKSLEEALELGVDWSLREGYAWPEDKEHCEEYGRMLQADPTKVSPRAKKRGLTQLGTLGAGNHYAEIQVVEEIFDHVAARKMGIGKLGQVVIMIHSGSRGLGHQVATDALQLMERAMERDGIKLNDRQLACARISSPEGQDYLKSMAAAANFAWVNRTSMTFLARQAFAKVFGKTPLELDMHLIYDVSHNIAKVETHVVDGQMKQLLVHRKGATRAFPPHHPLIPCDYQFTGQPVLVGGTMGTCSYVLLGTEQGMKETFGSTCHGAGRAQSRSASRRKLNYEEVLNNLKEKGIAIRVASPKLVTEEA 481
            K   R+F EE  Y+ K +  +Y I+ GFVPNMK PG F+VNE L  L+  ELQ +CE  N GGF+PAVKQ+ANVA+LPG+V +SIA+PDVHSGYGFAIGNVAA DMND  +VVSPGGVGFDINCGVRLIRTNL E  V P++E LAQ LFDHIPVGVGS+GIIPTT K LEEALE+G+DWS+REGY+W EDKEHCEEYGRML ADP+KVS RAKKRGL Q+GTLGAGNHY EIQVVEEIFD  AA +MGI K+GQV IMIHSGSRGLGHQVATD+L  ME+AM RDGI+ NDRQLACARI S EGQ+YL +MA AAN+AWVNR SMTFLARQAFAK F K P ELDMHL+YDVSHNIAK+E H+VDG+MKQLLVHRKG+TRAFPPHHPLIP DYQFTGQPVL+GGTMGTCSYVL GT++GM+ETFGSTCHGAGRA+SR+ +R KL Y+EVLNNLK KGI+IRVASPKLV EEA
Sbjct:    2 KEKARTFKEETDYISKETDEKYRINEGFVPNMKVPGYFYVNESLRSLLDEELQAYCERGNVGGFLPAVKQLANVAALPGVVGKSIALPDVHSGYGFAIGNVAAMDMNDPSSVVSPGGVGFDINCGVRLIRTNLTEDQVRPLQEDLAQALFDHIPVGVGSQGIIPTTAKDLEEALEMGMDWSIREGYSWVEDKEHCEEYGRMLNADPSKVSKRAKKRGLPQMGTLGAGNHYCEIQVVEEIFDVPAASRMGISKVGQVCIMIHSGSRGLGHQVATDSLTAMEKAMSRDGIETNDRQLACARIDSEEGQNYLAAMACAANYAWVNRCSMTFLARQAFAKTFKKNPDELDMHLVYDVSHNIAKIEEHLVDGEMKQLLVHRKGSTRAFPPHHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTKKGMEETFGSTCHGAGRARSRANARNKLEYQEVLNNLKAKGISIRVASPKLVMEEA 474          
BLAST of Ggra6509.t1 vs. uniprot
Match: A0A1X6NVK2 (RNA-splicing ligase RtcB homolog n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NVK2_PORUM)

HSP 1 Score: 736 bits (1901), Expect = 4.920e-264
Identity = 368/482 (76.35%), Postives = 413/482 (85.68%), Query Frame = 0
Query:    1 MPNTARPKKHSKRSFDEELAYLHKISPCRYEIDVGFVPNMKTPGTFFVNELLAPLVKNELQRFCEN-ENAGGFIPAVKQIANVASLPGIVYRSIAMPDVHSGYGFAIGNVAAFDMNDKEAVVSPGGVGFDINCGVRLIRTNLMESDVDPVKEQLAQTLFDHIPVGVGSKGIIPTTMKSLEEALELGVDWSLREGYAWPEDKEHCEEYGRMLQADPTKVSPRAKKRGLTQLGTLGAGNHYAEIQVVEEIFDHVAARKMGIGKLGQVVIMIHSGSRGLGHQVATDALQLMERAMERDGIKLNDRQLACARISSPEGQDYLKSMAAAANFAWVNRTSMTFLARQAFAKVFGKTPLELDMHLIYDVSHNIAKVETHVVDGQMKQLLVHRKGATRAFPPHHPLIPCDYQFTGQPVLVGGTMGTCSYVLLGTEQGMKETFGSTCHGAGRAQSRSASRRKLNYEEVLNNLKEKGIAIRVASPKLVTEEA 481
            +P    P     R+ +EE+AY+ ++    YEI  GFV  M+ PG FFVN  L  LV  EL+  CE   + GGF+PAVKQIANVA+LPGIV  S+AMPD+HSGYGFAIGNVAAFDM+D EAVVSPGGVGFDINCGVRL+RTNL E+DV   KE LAQTLFDHIPVGVGS+GIIPTT +SL EALELG+DWSLR+GYAWPEDKEHCEEYGRM  AD +KVS RA+KRGL QLGTLGAGNHYAEIQVV+EIF+  AARKMGI K+GQVV+MIHSGSRGLGHQVATDALQ ME AM RD I +NDRQLACARISSPEGQDYL SMAAAAN+AWVNR++MTFLARQAFAKVF  TP +LDMH+IYDVSHNIAK+E HVV G+ ++LLVHRKGATRAFPPHHP+IP DYQF GQPVLVGGTMGTCSY+LLGT+ GM+ETFGSTCHGAGRAQSR+++RR L+YE VLNNLK KGIAIRVASPKLVTEEA
Sbjct:    9 VPAAEAPAPAGARTLEEEMAYVSRLDDTSYEIRPGFVDGMRVPGRFFVNPQLEKLVFGELELACERGADGGGFLPAVKQIANVATLPGIVAGSLAMPDLHSGYGFAIGNVAAFDMDDPEAVVSPGGVGFDINCGVRLLRTNLTEADVADKKELLAQTLFDHIPVGVGSQGIIPTTSESLCEALELGMDWSLRQGYAWPEDKEHCEEYGRMPGADASKVSARARKRGLPQLGTLGAGNHYAEIQVVDEIFEPTAARKMGIDKVGQVVVMIHSGSRGLGHQVATDALQAMESAMARDNITVNDRQLACARISSPEGQDYLASMAAAANYAWVNRSTMTFLARQAFAKVFNSTPYDLDMHVIYDVSHNIAKIEDHVVAGKPRKLLVHRKGATRAFPPHHPMIPVDYQFIGQPVLVGGTMGTCSYLLLGTDTGMRETFGSTCHGAGRAQSRASARRTLDYETVLNNLKAKGIAIRVASPKLVTEEA 490          
BLAST of Ggra6509.t1 vs. uniprot
Match: A0A087SMJ6 (RNA-splicing ligase RtcB homolog n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SMJ6_AUXPR)

HSP 1 Score: 733 bits (1891), Expect = 1.130e-262
Identity = 357/471 (75.80%), Postives = 411/471 (87.26%), Query Frame = 0
Query:   11 SKRSFDEELAYLHKISPCRYEIDVGFVPNMKTPGTFFVNELLAPLVKNELQRFCENENAGGFIPAVKQIANVASLPGIVYRSIAMPDVHSGYGFAIGNVAAFDMNDKEAVVSPGGVGFDINCGVRLIRTNLMESDVDPVKEQLAQTLFDHIPVGVGSKGIIPTTMKSLEEALELGVDWSLREGYAWPEDKEHCEEYGRMLQADPTKVSPRAKKRGLTQLGTLGAGNHYAEIQVVEEIFDHVAARKMGIGKLGQVVIMIHSGSRGLGHQVATDALQLMERAMERDGIKLNDRQLACARISSPEGQDYLKSMAAAANFAWVNRTSMTFLARQAFAKVFGKTPLELDMHLIYDVSHNIAKVETHVVDGQMKQLLVHRKGATRAFPPHHPLIPCDYQFTGQPVLVGGTMGTCSYVLLGTEQGMKETFGSTCHGAGRAQSRSASRRKLNYEEVLNNLKEKGIAIRVASPKLVTEEA 481
            ++R+++EE A++ K+SP  + I+ GFVPNM+ PG F+VN  L  ++ +EL+ +C+   AGGF+PAVKQIANVA+LPGIV  SIAMPDVHSGYGF+IGNVAAFDM+D EAVVSPGGVGFDINCGVRL+RTNL E DV  VKEQLAQ LFDHIPVGVGS+GIIPTT + L  ALELG+DWSLREGYAW EDKEHCEE GRML ADPT+VSPRAKKRGL Q+GTLGAGNHYAEIQVV+ +FD  AARKMGI  +GQV +MIHSGSRGLGHQVATDAL  MERAM RDGI +NDRQLACARI+S EGQDYL +MA AANFAWVNR+SMTFL RQAFAK+F  TP +LDMH++YDVSHNIAKVE H+VDG+MK LLVHRKGATRAFPPHHPLIP DYQ TGQPVL+GGTMGT SYVL GT++GM ET+GSTCHGAGRA+SR+A+R KL+Y++VL++LK KGIAIRVASPKLV EEA
Sbjct:   10 TRRTYEEESAFITKLSPYHHRIETGFVPNMRVPGIFYVNGALRSILDDELRAYCDRGPAGGFLPAVKQIANVAALPGIVRHSIAMPDVHSGYGFSIGNVAAFDMSDPEAVVSPGGVGFDINCGVRLLRTNLREEDVLGVKEQLAQALFDHIPVGVGSQGIIPTTSRDLAGALELGMDWSLREGYAWAEDKEHCEEAGRMLGADPTRVSPRAKKRGLPQMGTLGAGNHYAEIQVVDAVFDRAAARKMGIDAVGQVCVMIHSGSRGLGHQVATDALVAMERAMARDGIPVNDRQLACARIASQEGQDYLAAMACAANFAWVNRSSMTFLCRQAFAKMFDATPDDLDMHVVYDVSHNIAKVEEHMVDGRMKSLLVHRKGATRAFPPHHPLIPVDYQLTGQPVLIGGTMGTASYVLTGTDKGMAETWGSTCHGAGRARSRNAARNKLDYQQVLDSLKTKGIAIRVASPKLVMEEA 480          
BLAST of Ggra6509.t1 vs. uniprot
Match: A0A7S0WTW0 (RNA-splicing ligase RtcB homolog n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WTW0_9CHLO)

HSP 1 Score: 732 bits (1890), Expect = 1.200e-262
Identity = 357/469 (76.12%), Postives = 408/469 (86.99%), Query Frame = 0
Query:   13 RSFDEELAYLHKISPCRYEIDVGFVPNMKTPGTFFVNELLAPLVKNELQRFCENENAGGFIPAVKQIANVASLPGIVYRSIAMPDVHSGYGFAIGNVAAFDMNDKEAVVSPGGVGFDINCGVRLIRTNLMESDVDPVKEQLAQTLFDHIPVGVGSKGIIPTTMKSLEEALELGVDWSLREGYAWPEDKEHCEEYGRMLQADPTKVSPRAKKRGLTQLGTLGAGNHYAEIQVVEEIFDHVAARKMGIGKLGQVVIMIHSGSRGLGHQVATDALQLMERAMERDGIKLNDRQLACARISSPEGQDYLKSMAAAANFAWVNRTSMTFLARQAFAKVFGKTPLELDMHLIYDVSHNIAKVETHVVDGQMKQLLVHRKGATRAFPPHHPLIPCDYQFTGQPVLVGGTMGTCSYVLLGTEQGMKETFGSTCHGAGRAQSRSASRRKLNYEEVLNNLKEKGIAIRVASPKLVTEEA 481
            R++D+E A++ K+ P +Y +  GFVP M+ PG F+VN+ L  L+ +ELQ+       GGF+PAVKQ+ANVA+LPGIV RSIA+PDVHSGYGFAIGNVAAFDM+D +AVVSPGGVGFDINCGVRL+RTNL E+DV+PVK+ LAQ LFDHIPVGVGS+GIIPT+ K LE ALELG+DWSLREGYAW EDKEHCEEYGRML ADP+KVS RAKKRGL Q+GTLGAGNHYAEIQVV+EI+DH AA KMGI ++GQV +MIHSGSRGLGHQVATDAL  MERAM RD I  NDRQLACARISS EGQDYL +MA AAN+AWVNR+SMTFL RQAFAKVF  TP +LDMH++YDVSHNIAKVE H+VDG+  +LLVHRKG+TRAFPPHHPLIP DYQFTGQPVL+GGTMGTCSYVL GTEQG  ETFGSTCHGAGRA+SR++SR KL+Y+EVL+ LK KGIAIRVASPKLV EEA
Sbjct:    4 RTYDQECAFIEKVGPVQYCVKPGFVPGMRVPGAFYVNDHLKGLLFDELQQSVARGAQGGFLPAVKQLANVAALPGIVSRSIALPDVHSGYGFAIGNVAAFDMDDPQAVVSPGGVGFDINCGVRLVRTNLTEADVEPVKDALAQALFDHIPVGVGSQGIIPTSAKDLEAALELGMDWSLREGYAWAEDKEHCEEYGRMLTADPSKVSSRAKKRGLPQMGTLGAGNHYAEIQVVDEIYDHAAASKMGIDQVGQVCVMIHSGSRGLGHQVATDALVEMERAMARDKIATNDRQLACARISSREGQDYLAAMACAANYAWVNRSSMTFLTRQAFAKVFNSTPDDLDMHVVYDVSHNIAKVEEHIVDGKRMRLLVHRKGSTRAFPPHHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTEQGFTETFGSTCHGAGRARSRNSSRNKLDYQEVLDALKAKGIAIRVASPKLVMEEA 472          
BLAST of Ggra6509.t1 vs. uniprot
Match: A0A061SPI0 (RNA-splicing ligase RtcB homolog n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SPI0_9CHLO)

HSP 1 Score: 732 bits (1890), Expect = 1.240e-262
Identity = 356/469 (75.91%), Postives = 407/469 (86.78%), Query Frame = 0
Query:   13 RSFDEELAYLHKISPCRYEIDVGFVPNMKTPGTFFVNELLAPLVKNELQRFCENENAGGFIPAVKQIANVASLPGIVYRSIAMPDVHSGYGFAIGNVAAFDMNDKEAVVSPGGVGFDINCGVRLIRTNLMESDVDPVKEQLAQTLFDHIPVGVGSKGIIPTTMKSLEEALELGVDWSLREGYAWPEDKEHCEEYGRMLQADPTKVSPRAKKRGLTQLGTLGAGNHYAEIQVVEEIFDHVAARKMGIGKLGQVVIMIHSGSRGLGHQVATDALQLMERAMERDGIKLNDRQLACARISSPEGQDYLKSMAAAANFAWVNRTSMTFLARQAFAKVFGKTPLELDMHLIYDVSHNIAKVETHVVDGQMKQLLVHRKGATRAFPPHHPLIPCDYQFTGQPVLVGGTMGTCSYVLLGTEQGMKETFGSTCHGAGRAQSRSASRRKLNYEEVLNNLKEKGIAIRVASPKLVTEEA 481
            R+++EE  Y+ K++   Y+I +GFVPNMK PGT++VN+ LAPL+  EL+   + ++ GGF+PA KQIANVASLPGIV  SIA+PDVHSGYGFAIGNVAAFDMN+ EAVVSPGGVGFDINCGVRL+RTNLMESDVD +K++L Q+LFDHIPVGVGS+GIIPTT   L+ ALE G+DWSLREGY+W EDKEHCEEYGRML ADP+KVS RAKKRGL Q+GTLGAGNHYAEIQVV+E+FD  AA+KMGI + GQV +MIHSGSRGLGHQVATDAL  ME AM RD I+ NDRQLACARISS EGQDYL +MA AAN+AWVNR+SMTFL RQAFAK    TP +LDMH++YDVSHNIAKVE H+VDG+M +LLVHRKGATRAFPPHHPLIP DYQFTGQPVL+GGTMGTCSYVL GTE+GM ETFGSTCHGAGRAQSR+ SR++L+Y  VL NLK KGIAIRVASPKLV EEA
Sbjct:    5 RTYEEECEYIEKVNDYEYKIKIGFVPNMKVPGTYYVNQALAPLMMEELKMHSDRQDHGGFLPASKQIANVASLPGIVKASIALPDVHSGYGFAIGNVAAFDMNNPEAVVSPGGVGFDINCGVRLLRTNLMESDVDELKQELTQSLFDHIPVGVGSQGIIPTTAADLQSALEQGMDWSLREGYSWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQMGTLGAGNHYAEIQVVDEVFDEAAAKKMGIEQKGQVCVMIHSGSRGLGHQVATDALVGMEAAMARDNIETNDRQLACARISSKEGQDYLAAMACAANYAWVNRSSMTFLCRQAFAKTLKTTPDDLDMHVVYDVSHNIAKVEEHLVDGKMMKLLVHRKGATRAFPPHHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTEKGMAETFGSTCHGAGRAQSRNKSRKELDYNVVLENLKTKGIAIRVASPKLVMEEA 473          
BLAST of Ggra6509.t1 vs. uniprot
Match: A0A7S3M965 (RNA-splicing ligase RtcB homolog n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M965_9STRA)

HSP 1 Score: 731 bits (1888), Expect = 4.670e-262
Identity = 359/469 (76.55%), Postives = 406/469 (86.57%), Query Frame = 0
Query:   13 RSFDEELAYLHKISPCRYEIDVGFVPNMKTPGTFFVNELLAPLVKNELQRFCENENAGGFIPAVKQIANVASLPGIVYRSIAMPDVHSGYGFAIGNVAAFDMNDKEAVVSPGGVGFDINCGVRLIRTNLMESDVDPVKEQLAQTLFDHIPVGVGSKGIIPTTMKSLEEALELGVDWSLREGYAWPEDKEHCEEYGRMLQADPTKVSPRAKKRGLTQLGTLGAGNHYAEIQVVEEIFDHVAARKMGIGKLGQVVIMIHSGSRGLGHQVATDALQLMERAMERDGIKLNDRQLACARISSPEGQDYLKSMAAAANFAWVNRTSMTFLARQAFAKVFGKTPLELDMHLIYDVSHNIAKVETHVVDGQMKQLLVHRKGATRAFPPHHPLIPCDYQFTGQPVLVGGTMGTCSYVLLGTEQGMKETFGSTCHGAGRAQSRSASRRKLNYEEVLNNLKEKGIAIRVASPKLVTEEA 481
            R+FD+E +Y+ KISP +YEI+ GFV  M   GTF+VN  L  LV +EL+  C +   GGF+PAVKQIANVA+LPGIV++SI +PD+HSGYGFAIGNVAAFDM++ E+VVSPGGVGFDINCGVRL+RTNL E+DV PV+EQLAQ+LFDHIPVGVGSKG+IPTTM  L EALE+G+DWS+REGYAW EDKEHCEEYGRMLQADPTKVS RAKKRGL QLGTLGAGNHY EIQVV+EIFD  AA +MGI K+GQV IMIHSGSRGLGHQVATDAL  ME AM RD +  NDRQLACARI+SPEGQDYL  MAAAAN+AWVNR+SMTFL RQAFAK F + P +LDMH++YDVSHNIAKVE H+VDG+MK LLVHRKG+TRAFPPHHPLIP DYQF GQPVL+GGTMGTCSYVL GT+ GM ETFGSTCHGAGRAQSR+ASRR L Y+EVL+ L  +GIAIRVASPKLV EEA
Sbjct:   22 RTFDQEKSYIKKISPWKYEINKGFVNGMNCKGTFYVNSALEGLVFDELRCSCGSGAFGGFLPAVKQIANVAALPGIVHKSIGLPDLHSGYGFAIGNVAAFDMDNPESVVSPGGVGFDINCGVRLLRTNLTEADVGPVREQLAQSLFDHIPVGVGSKGVIPTTMADLNEALEMGMDWSVREGYAWAEDKEHCEEYGRMLQADPTKVSARAKKRGLPQLGTLGAGNHYCEIQVVDEIFDQQAAARMGIDKIGQVCIMIHSGSRGLGHQVATDALTAMEAAMTRDKLVTNDRQLACARINSPEGQDYLAGMAAAANYAWVNRSSMTFLVRQAFAKQFNREPDDLDMHVVYDVSHNIAKVEQHMVDGKMKTLLVHRKGSTRAFPPHHPLIPVDYQFIGQPVLIGGTMGTCSYVLTGTQTGMDETFGSTCHGAGRAQSRNASRRTLEYQEVLDKLASQGIAIRVASPKLVMEEA 490          
BLAST of Ggra6509.t1 vs. uniprot
Match: A0A7S3BHP6 (RNA-splicing ligase RtcB homolog n=3 Tax=Eukaryota TaxID=2759 RepID=A0A7S3BHP6_9VIRI)

HSP 1 Score: 731 bits (1888), Expect = 5.020e-262
Identity = 360/484 (74.38%), Postives = 412/484 (85.12%), Query Frame = 0
Query:    2 PNTARPKKHSKRSFDEELAYLHKISPCRYEIDVGFVPNMKTPGTFFVNELLAPLVKNELQRFCENENAG----GFIPAVKQIANVASLPGIVYRSIAMPDVHSGYGFAIGNVAAFDMNDKEAVVSPGGVGFDINCGVRLIRTNLMESDVDPVKEQLAQTLFDHIPVGVGSKGIIPTTMKSLEEALELGVDWSLREGYAWPEDKEHCEEYGRMLQADPTKVSPRAKKRGLTQLGTLGAGNHYAEIQVVEEIFDHVAARKMGIGKLGQVVIMIHSGSRGLGHQVATDALQLMERAMERDGIKLNDRQLACARISSPEGQDYLKSMAAAANFAWVNRTSMTFLARQAFAKVFGKTPLELDMHLIYDVSHNIAKVETHVVDGQMKQLLVHRKGATRAFPPHHPLIPCDYQFTGQPVLVGGTMGTCSYVLLGTEQGMKETFGSTCHGAGRAQSRSASRRKLNYEEVLNNLKEKGIAIRVASPKLVTEEA 481
            P+TA P   + RS+DEE+AYL ++   R+ I  GFVPNM   G F+VNE L  L   EL+  CE    G    GF+PAVKQIANVA+LPG+V  S+ +PDVHSGYGFAIGNVAAFDM+D EA+VSPGGVGFDINCGVRLIRTNL E+DV P+KE+LAQ+LFDHIPVGVGS+GIIPTT   L E LE+G+DWS+REG+AW EDKEHCEEYGRML ADP KVS RAKKRGL Q+GTLGAGNHYAE+QVV+EIFD  AA KMGI  +GQVV+MIHSGSRGLGHQVATD+L  MERAM RDGI++NDRQLACARI S EGQDYL++MAAAAN+AWVNR+SMTFL RQAFAK F KTP ELDMH+IYDVSHNIAK+E HVV+G++K+LLVHRKG+TRAFPPHHPLIP DYQ TGQPVL+GGTMGTCSYVL GTEQGM+ETFGSTCHGAGRAQSR+ SR  L+Y++VL+ LK KGI+IRVASPKLV EEA
Sbjct:   11 PSTAEP--GTVRSYDEEIAYLERVDDQRWRIKAGFVPNMNVDGMFYVNEKLQGLALGELEVACERAKGGXXXXGFLPAVKQIANVAALPGVVGHSVGLPDVHSGYGFAIGNVAAFDMDDPEAIVSPGGVGFDINCGVRLIRTNLTEADVLPIKEELAQSLFDHIPVGVGSQGIIPTTAGDLNEVLEMGMDWSVREGFAWVEDKEHCEEYGRMLTADPNKVSTRAKKRGLPQMGTLGAGNHYAEVQVVDEIFDERAASKMGINSVGQVVVMIHSGSRGLGHQVATDSLTAMERAMARDGIEVNDRQLACARIGSKEGQDYLQAMAAAANYAWVNRSSMTFLVRQAFAKAFKKTPDELDMHVIYDVSHNIAKMEEHVVNGELKRLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMRETFGSTCHGAGRAQSRNKSRHNLDYQQVLDALKAKGISIRVASPKLVMEEA 492          
The following BLAST results are available for this feature:
BLAST of Ggra6509.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IH132.770e-31287.94RNA-splicing ligase RtcB homolog n=1 Tax=Gracilari... [more]
R7QGD81.010e-28382.70RNA-splicing ligase RtcB homolog n=1 Tax=Chondrus ... [more]
A0A2P6TPW42.860e-26676.76RNA-splicing ligase RtcB homolog n=1 Tax=Chlorella... [more]
A0A5B8MFK28.220e-26676.32RNA-splicing ligase RtcB homolog n=2 Tax=Chloropic... [more]
A0A1X6NVK24.920e-26476.35RNA-splicing ligase RtcB homolog n=1 Tax=Porphyra ... [more]
A0A087SMJ61.130e-26275.80RNA-splicing ligase RtcB homolog n=2 Tax=Auxenochl... [more]
A0A7S0WTW01.200e-26276.12RNA-splicing ligase RtcB homolog n=1 Tax=Chlamydom... [more]
A0A061SPI01.240e-26275.91RNA-splicing ligase RtcB homolog n=2 Tax=Tetraselm... [more]
A0A7S3M9654.670e-26276.55RNA-splicing ligase RtcB homolog n=1 Tax=Spumella ... [more]
A0A7S3BHP65.020e-26274.38RNA-splicing ligase RtcB homolog n=3 Tax=Eukaryota... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 445..465
IPR001233RNA-splicing ligase, RtcBPFAMPF01139RtcBcoord: 78..482
e-value: 7.7E-138
score: 460.1
IPR001233RNA-splicing ligase, RtcBPANTHERPTHR11118UNCHARACTERIZEDcoord: 21..482
IPR001233RNA-splicing ligase, RtcBPROSITEPS01288UPF0027coord: 78..107
IPR036025tRNA-splicing ligase RtcB-like superfamilyGENE3D3.90.1860.10coord: 19..483
e-value: 2.0E-181
score: 606.1
IPR036025tRNA-splicing ligase RtcB-like superfamilySUPERFAMILY103365Hypothetical protein PH1602coord: 21..481
IPR027513RNA-splicing ligase RtcB homologue, eukaryoticHAMAPMF_03144RtcB_eukcoord: 11..483
score: 55.486397

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:574647..576098 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6509.t1Ggra6509.t1Gracilaria gracilis GNS1m malemRNAtig00000074_pilon 574647..576098 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6509.t1 ID=Ggra6509.t1|Name=Ggra6509.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=484bp
MPNTARPKKHSKRSFDEELAYLHKISPCRYEIDVGFVPNMKTPGTFFVNE
LLAPLVKNELQRFCENENAGGFIPAVKQIANVASLPGIVYRSIAMPDVHS
GYGFAIGNVAAFDMNDKEAVVSPGGVGFDINCGVRLIRTNLMESDVDPVK
EQLAQTLFDHIPVGVGSKGIIPTTMKSLEEALELGVDWSLREGYAWPEDK
EHCEEYGRMLQADPTKVSPRAKKRGLTQLGTLGAGNHYAEIQVVEEIFDH
VAARKMGIGKLGQVVIMIHSGSRGLGHQVATDALQLMERAMERDGIKLND
RQLACARISSPEGQDYLKSMAAAANFAWVNRTSMTFLARQAFAKVFGKTP
LELDMHLIYDVSHNIAKVETHVVDGQMKQLLVHRKGATRAFPPHHPLIPC
DYQFTGQPVLVGGTMGTCSYVLLGTEQGMKETFGSTCHGAGRAQSRSASR
RKLNYEEVLNNLKEKGIAIRVASPKLVTEEAQR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001233RtcB
IPR036025RtcB-like_sf
IPR027513RtcB_euk