Ggra6509.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6509.t1
Unique Name	Ggra6509.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	484

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000074_pilon	contig	tig00000074_pilon:574647..576098 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3075.A0A087SMJ6
PFAMs	RtcB
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K14415
Evalue	1.61e-262
EggNOG OGs	COG1690@1\|root,KOG3833@2759\|Eukaryota,37X1B@33090\|Viridiplantae,34J82@3041\|Chlorophyta
EC	6.5.1.3
Description	Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'- phosphodiester. May act as
COG category	H
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6509	Ggra6509	Gracilaria gracilis GNS1m male	gene	tig00000074_pilon 574647..576098 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6509.t1.start1	Ggra6509.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000074_pilon 574647..574649 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6509.t1.CDS1	Ggra6509.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000074_pilon 574647..576098 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6509.t1.exon1	Ggra6509.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000074_pilon 574647..576098 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6509.t1.stop1	Ggra6509.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000074_pilon 576096..576098 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6509.t1	Ggra6509.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000074_pilon 574647..576098 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000074_pilon:574647..576098+
coding sequence from alignment at tig00000074_pilon:574647..576098+

mRNA sequence

>Ggra6509.t1 ID=Ggra6509.t1|Name=Ggra6509.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=484bp
MPNTARPKKHSKRSFDEELAYLHKISPCRYEIDVGFVPNMKTPGTFFVNE
LLAPLVKNELQRFCENENAGGFIPAVKQIANVASLPGIVYRSIAMPDVHS
GYGFAIGNVAAFDMNDKEAVVSPGGVGFDINCGVRLIRTNLMESDVDPVK
EQLAQTLFDHIPVGVGSKGIIPTTMKSLEEALELGVDWSLREGYAWPEDK
EHCEEYGRMLQADPTKVSPRAKKRGLTQLGTLGAGNHYAEIQVVEEIFDH
VAARKMGIGKLGQVVIMIHSGSRGLGHQVATDALQLMERAMERDGIKLND
RQLACARISSPEGQDYLKSMAAAANFAWVNRTSMTFLARQAFAKVFGKTP
LELDMHLIYDVSHNIAKVETHVVDGQMKQLLVHRKGATRAFPPHHPLIPC
DYQFTGQPVLVGGTMGTCSYVLLGTEQGMKETFGSTCHGAGRAQSRSASR
RKLNYEEVLNNLKEKGIAIRVASPKLVTEEAQR*

spliced messenger RNA

>Ggra6509.t1 ID=Ggra6509.t1|Name=Ggra6509.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1452bp|location=Sequence derived from alignment at tig00000074_pilon:574647..576098+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAACACGGCCCGTCCTAAGAAACACAGCAAGAGAAGTTTCGACGA
GGAGCTCGCCTACCTGCACAAAATTTCGCCATGTCGCTACGAAATCGACG
TCGGCTTCGTCCCGAATATGAAAACGCCGGGCACGTTCTTCGTAAACGAA
CTTCTTGCGCCTCTGGTTAAGAACGAACTACAACGTTTCTGTGAGAATGA
GAACGCTGGTGGCTTTATTCCAGCCGTCAAACAAATAGCAAATGTCGCTT
CTCTTCCTGGCATTGTTTATCGCTCTATCGCTATGCCTGATGTACACTCT
GGATATGGCTTCGCCATTGGAAACGTTGCGGCCTTTGACATGAACGACAA
GGAAGCCGTGGTATCACCGGGAGGCGTTGGCTTTGATATTAACTGCGGAG
TGCGTCTCATTCGCACCAATCTCATGGAAAGTGATGTGGACCCTGTGAAA
GAACAGCTCGCTCAAACTCTGTTTGATCATATCCCCGTTGGAGTTGGGTC
TAAAGGTATTATTCCTACCACAATGAAATCCCTCGAAGAAGCCCTAGAAC
TTGGAGTGGATTGGTCGTTGCGTGAAGGCTATGCGTGGCCCGAAGATAAA
GAGCACTGCGAGGAATATGGAAGGATGTTACAAGCAGACCCTACAAAAGT
TTCGCCGAGGGCGAAGAAGCGCGGCTTAACGCAACTGGGCACCCTTGGTG
CTGGGAATCATTACGCAGAAATTCAGGTTGTCGAGGAGATATTCGACCAT
GTCGCGGCTCGAAAAATGGGCATCGGAAAGTTGGGGCAGGTCGTAATAAT
GATTCACTCAGGTTCGAGAGGGTTGGGTCACCAAGTCGCGACGGACGCGT
TACAGCTAATGGAAAGAGCCATGGAGAGAGACGGAATCAAATTGAACGAT
AGACAATTGGCTTGTGCTCGGATATCATCACCTGAGGGACAAGACTATCT
GAAATCTATGGCAGCAGCGGCGAACTTTGCGTGGGTTAACCGCACTTCAA
TGACGTTCCTTGCTCGACAAGCGTTCGCGAAAGTTTTCGGCAAGACGCCA
TTAGAACTAGATATGCATCTCATTTATGATGTGAGTCATAATATCGCAAA
GGTAGAGACTCATGTGGTGGATGGCCAAATGAAGCAACTTCTCGTGCACA
GAAAGGGAGCAACTCGGGCCTTTCCCCCGCATCATCCGCTCATTCCTTGC
GATTATCAATTCACAGGACAGCCCGTGTTAGTGGGCGGAACCATGGGAAC
ATGTAGTTACGTACTGCTCGGAACTGAACAAGGAATGAAGGAGACTTTCG
GATCCACGTGCCATGGGGCCGGAAGGGCACAGAGTCGATCTGCAAGCAGG
CGGAAGTTGAACTATGAAGAAGTATTGAACAATTTGAAGGAAAAAGGTAT
TGCGATTCGAGTTGCCTCCCCAAAACTCGTAACAGAAGAAGCTCAGAGGT
AA

protein sequence of Ggra6509.t1

>Ggra6509.t1 ID=Ggra6509.t1|Name=Ggra6509.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=484bp
MPNTARPKKHSKRSFDEELAYLHKISPCRYEIDVGFVPNMKTPGTFFVNE
LLAPLVKNELQRFCENENAGGFIPAVKQIANVASLPGIVYRSIAMPDVHS
GYGFAIGNVAAFDMNDKEAVVSPGGVGFDINCGVRLIRTNLMESDVDPVK
EQLAQTLFDHIPVGVGSKGIIPTTMKSLEEALELGVDWSLREGYAWPEDK
EHCEEYGRMLQADPTKVSPRAKKRGLTQLGTLGAGNHYAEIQVVEEIFDH
VAARKMGIGKLGQVVIMIHSGSRGLGHQVATDALQLMERAMERDGIKLND
RQLACARISSPEGQDYLKSMAAAANFAWVNRTSMTFLARQAFAKVFGKTP
LELDMHLIYDVSHNIAKVETHVVDGQMKQLLVHRKGATRAFPPHHPLIPC
DYQFTGQPVLVGGTMGTCSYVLLGTEQGMKETFGSTCHGAGRAQSRSASR
RKLNYEEVLNNLKEKGIAIRVASPKLVTEEAQR*

mRNA from alignment at tig00000074_pilon:574647..576098+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6509.t1 ID=Ggra6509.t1|Name=Ggra6509.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1452bp|location=Sequence derived from alignment at tig00000074_pilon:574647..576098+ (Gracilaria gracilis GNS1m male)
ATGCCGAACACGGCCCGTCCTAAGAAACACAGCAAGAGAAGTTTCGACGA
GGAGCTCGCCTACCTGCACAAAATTTCGCCATGTCGCTACGAAATCGACG
TCGGCTTCGTCCCGAATATGAAAACGCCGGGCACGTTCTTCGTAAACGAA
CTTCTTGCGCCTCTGGTTAAGAACGAACTACAACGTTTCTGTGAGAATGA
GAACGCTGGTGGCTTTATTCCAGCCGTCAAACAAATAGCAAATGTCGCTT
CTCTTCCTGGCATTGTTTATCGCTCTATCGCTATGCCTGATGTACACTCT
GGATATGGCTTCGCCATTGGAAACGTTGCGGCCTTTGACATGAACGACAA
GGAAGCCGTGGTATCACCGGGAGGCGTTGGCTTTGATATTAACTGCGGAG
TGCGTCTCATTCGCACCAATCTCATGGAAAGTGATGTGGACCCTGTGAAA
GAACAGCTCGCTCAAACTCTGTTTGATCATATCCCCGTTGGAGTTGGGTC
TAAAGGTATTATTCCTACCACAATGAAATCCCTCGAAGAAGCCCTAGAAC
TTGGAGTGGATTGGTCGTTGCGTGAAGGCTATGCGTGGCCCGAAGATAAA
GAGCACTGCGAGGAATATGGAAGGATGTTACAAGCAGACCCTACAAAAGT
TTCGCCGAGGGCGAAGAAGCGCGGCTTAACGCAACTGGGCACCCTTGGTG
CTGGGAATCATTACGCAGAAATTCAGGTTGTCGAGGAGATATTCGACCAT
GTCGCGGCTCGAAAAATGGGCATCGGAAAGTTGGGGCAGGTCGTAATAAT
GATTCACTCAGGTTCGAGAGGGTTGGGTCACCAAGTCGCGACGGACGCGT
TACAGCTAATGGAAAGAGCCATGGAGAGAGACGGAATCAAATTGAACGAT
AGACAATTGGCTTGTGCTCGGATATCATCACCTGAGGGACAAGACTATCT
GAAATCTATGGCAGCAGCGGCGAACTTTGCGTGGGTTAACCGCACTTCAA
TGACGTTCCTTGCTCGACAAGCGTTCGCGAAAGTTTTCGGCAAGACGCCA
TTAGAACTAGATATGCATCTCATTTATGATGTGAGTCATAATATCGCAAA
GGTAGAGACTCATGTGGTGGATGGCCAAATGAAGCAACTTCTCGTGCACA
GAAAGGGAGCAACTCGGGCCTTTCCCCCGCATCATCCGCTCATTCCTTGC
GATTATCAATTCACAGGACAGCCCGTGTTAGTGGGCGGAACCATGGGAAC
ATGTAGTTACGTACTGCTCGGAACTGAACAAGGAATGAAGGAGACTTTCG
GATCCACGTGCCATGGGGCCGGAAGGGCACAGAGTCGATCTGCAAGCAGG
CGGAAGTTGAACTATGAAGAAGTATTGAACAATTTGAAGGAAAAAGGTAT
TGCGATTCGAGTTGCCTCCCCAAAACTCGTAACAGAAGAAGCTCAGAGGT
AA

Coding sequence (CDS) from alignment at tig00000074_pilon:574647..576098+

>Ggra6509.t1 ID=Ggra6509.t1|Name=Ggra6509.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1452bp|location=Sequence derived from alignment at tig00000074_pilon:574647..576098+ (Gracilaria gracilis GNS1m male)
ATGCCGAACACGGCCCGTCCTAAGAAACACAGCAAGAGAAGTTTCGACGA
GGAGCTCGCCTACCTGCACAAAATTTCGCCATGTCGCTACGAAATCGACG
TCGGCTTCGTCCCGAATATGAAAACGCCGGGCACGTTCTTCGTAAACGAA
CTTCTTGCGCCTCTGGTTAAGAACGAACTACAACGTTTCTGTGAGAATGA
GAACGCTGGTGGCTTTATTCCAGCCGTCAAACAAATAGCAAATGTCGCTT
CTCTTCCTGGCATTGTTTATCGCTCTATCGCTATGCCTGATGTACACTCT
GGATATGGCTTCGCCATTGGAAACGTTGCGGCCTTTGACATGAACGACAA
GGAAGCCGTGGTATCACCGGGAGGCGTTGGCTTTGATATTAACTGCGGAG
TGCGTCTCATTCGCACCAATCTCATGGAAAGTGATGTGGACCCTGTGAAA
GAACAGCTCGCTCAAACTCTGTTTGATCATATCCCCGTTGGAGTTGGGTC
TAAAGGTATTATTCCTACCACAATGAAATCCCTCGAAGAAGCCCTAGAAC
TTGGAGTGGATTGGTCGTTGCGTGAAGGCTATGCGTGGCCCGAAGATAAA
GAGCACTGCGAGGAATATGGAAGGATGTTACAAGCAGACCCTACAAAAGT
TTCGCCGAGGGCGAAGAAGCGCGGCTTAACGCAACTGGGCACCCTTGGTG
CTGGGAATCATTACGCAGAAATTCAGGTTGTCGAGGAGATATTCGACCAT
GTCGCGGCTCGAAAAATGGGCATCGGAAAGTTGGGGCAGGTCGTAATAAT
GATTCACTCAGGTTCGAGAGGGTTGGGTCACCAAGTCGCGACGGACGCGT
TACAGCTAATGGAAAGAGCCATGGAGAGAGACGGAATCAAATTGAACGAT
AGACAATTGGCTTGTGCTCGGATATCATCACCTGAGGGACAAGACTATCT
GAAATCTATGGCAGCAGCGGCGAACTTTGCGTGGGTTAACCGCACTTCAA
TGACGTTCCTTGCTCGACAAGCGTTCGCGAAAGTTTTCGGCAAGACGCCA
TTAGAACTAGATATGCATCTCATTTATGATGTGAGTCATAATATCGCAAA
GGTAGAGACTCATGTGGTGGATGGCCAAATGAAGCAACTTCTCGTGCACA
GAAAGGGAGCAACTCGGGCCTTTCCCCCGCATCATCCGCTCATTCCTTGC
GATTATCAATTCACAGGACAGCCCGTGTTAGTGGGCGGAACCATGGGAAC
ATGTAGTTACGTACTGCTCGGAACTGAACAAGGAATGAAGGAGACTTTCG
GATCCACGTGCCATGGGGCCGGAAGGGCACAGAGTCGATCTGCAAGCAGG
CGGAAGTTGAACTATGAAGAAGTATTGAACAATTTGAAGGAAAAAGGTAT
TGCGATTCGAGTTGCCTCCCCAAAACTCGTAACAGAAGAAGCTCAGAGGT
AA