Ggra6507.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6507.t2
Unique NameGgra6507.t2
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length339
Homology
BLAST of Ggra6507.t2 vs. uniprot
Match: A0A2V3J5B0 (Splicing factor 3B subunit 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5B0_9FLOR)

HSP 1 Score: 511 bits (1317), Expect = 1.110e-167
Identity = 241/329 (73.25%), Postives = 287/329 (87.23%), Query Frame = 0
Query:   10 GALRVYRIDKKTRKPVFLHETLIEKPSYAVVAFRDMILVGIGRAIRLYDLGKRKLLKKGECKQAVRNIVTAIAVSGGDRVFVGDVQESVTLFKYIAGSGLGRGMDYNSVNAERLGGRFVCIANDTLCRWIVSLVALDYSTVCGSDKFGNVFVLRIPPELASEAEELMGVVAIEKGGGIGGSSRGMHQLRVEACVHVGGTVVGLSLGRLNGRTTIEMGPQNEDDESQDAIIYATMDGAVGVLIPLAAWNDAEFVRLVEHEMRRRYTTICARDHLAYRSSFYAVKNVVDGDLCEMLGALPHEDIVKCCNVIGQPVSEVLTRIEELRESWLG 338
            GALRVYRI++K+ +P+F+HET+IE+PS+A+ AFRDM+ VGIGR+IRLYDLGK++LL+KGE K AVRN VTAIAVSGGDR+FVGDVQESVTLFKYIAG   GRG+DY  V  ER GGR VCIANDTLCRW+VSLVALDYSTVCGSDKFGN+FVLR+P ELAS  +ELMGV  IE G GIGGS +G HQL +EACVHVG TV+ L+LG LNGRT +EMG + ++   Q+A++YATMDGAVGVL PLA WN+AEF RLVEHEMRRRY+T+C RDHLAYRS+FYA+KNVVDGDLCEML ALPHE+++KCC+ IGQ VS+V+ RI+ELRE+W+G
Sbjct: 1049 GALRVYRIERKSARPIFVHETVIEEPSFALAAFRDMVAVGIGRSIRLYDLGKQRLLRKGEYKYAVRNRVTAIAVSGGDRMFVGDVQESVTLFKYIAGWETGRGVDYGRVGMERHGGRLVCIANDTLCRWVVSLVALDYSTVCGSDKFGNIFVLRLPQELASMGDELMGVATIENGAGIGGSHKGAHQLHLEACVHVGATVISLTLGHLNGRTELEMGLEGKEKSKQEAVVYATMDGAVGVLAPLATWNEAEFARLVEHEMRRRYSTVCGRDHLAYRSAFYALKNVVDGDLCEMLRALPHEEVIKCCSSIGQSVSDVMKRIDELRETWIG 1377          
BLAST of Ggra6507.t2 vs. uniprot
Match: R7Q6T1 (Putative splicing factor 3B, subunit 3, SF3B3 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6T1_CHOCR)

HSP 1 Score: 238 bits (607), Expect = 5.250e-67
Identity = 136/326 (41.72%), Postives = 190/326 (58.28%), Query Frame = 0
Query:   12 LRVYRIDKKTRKPVFLHETLIEKPSYAVVAFRDMILVGIGRAIRLYDLGKRKLLKKGECKQAVRNIVTAIAVSGGDRVFVGDVQESVTLFKYIAGSGLGRGMDYNSVNAERLGGRFVCIANDTLCRWIVSLVALDYSTVCGSDKFGNVFVLRIPPELASEAEELMGVVAIEKGGGIGGSSRGMHQLRVEACVHVGGTVVGLSLGRLNGRTTIEMGPQNEDDESQDAIIYATMDGAVGVLIPLAAWNDAEFVRLVEHEMRRRYTTICARDHLAYRSSFYAVKNVVDGDLCEMLGALPHEDIVKCCNVIGQPVSEVLTRIEELRESWL 337
            LRVY++D  T +  F+H+T++ +  Y + AFRDM+LVGIG  +RLYDLGK++LL+KGE K AVRN ++A+A+SGGDR+FVGDV +SVTLFKY     +       +    R GG FV +A DT+ RWIV+L  LDY+TV   DKFGN+FVLR+P EL      L    A     G    +   H+L VEA  HVG     L  G L  +TT     + E +   +A+IY+T+ G +G+L PL   +D +F R +E EMR R                   K+VVDGDLC+    L      +C   +G+ V ++  ++EEL+ S++
Sbjct:  988 LRVYQVDAATERLTFVHKTVVPEAVYCLTAFRDMLLVGIGATLRLYDLGKQQLLRKGEYKLAVRNKISALAISGGDRIFVGDVSDSVTLFKYEPSEPIAANHTRGAAIGRR-GGHFVPLAADTVPRWIVTLEVLDYNTVSAGDKFGNIFVLRVPTELGILNGGLSITSASPVDRGRAAINIAPHKLVVEASYHVGSMTGSLVRGSLALQTT-----KLEKNAGDEALIYSTLSGTIGILAPLRTQHDIDFARALEREMRTRG------------------KHVVDGDLCQAFTGLSPTGREECATALGRSVEDIDKKLEELQSSYV 1289          
BLAST of Ggra6507.t2 vs. uniprot
Match: A0A4P9YTF0 (CPSF_A domain-containing protein n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YTF0_9FUNG)

HSP 1 Score: 192 bits (489), Expect = 1.010e-54
Identity = 112/325 (34.46%), Postives = 176/325 (54.15%), Query Frame = 0
Query:   10 GALRVYRIDKKTRKPVFLHETLIEKPSYAVVAFRDMILVGIGRAIRLYDLGKRKLLKKGECKQAVRNIVTAIAVSGGDRVFVGDVQESVTLFKYIAGSGLGRGMDYNSVNAERLGGRFVCIANDTLCRWIVSLVALDYSTVCGSDKFGNVFVLRIPPELASEAEE-LMGVVAIEKGGGIGGSSRGMHQLRVEACVHVGGTVVGLSLGRLNGRTTIEMGPQNEDDESQDAIIYATMDGAVGVLIPLAAWNDAEFVRLVEHEMRRRYTTICARDHLAYRSSFYAVKNVVDGDLCEMLGALPHEDIVKCCNVIGQPVSEVLTRIEELR 333
            G + +Y+  +      F+H+T +      ++ F + +LVG+G A+R+YD+GKRKLL+K E K   R IV+    + G+R+ VGD+QESV    Y+                  +  R +  A+DT  R+  +   +DY TV G DKFGN+FV R+P +++ + E+   G   + + G + GSS   H+L+     HVG TV  +       + T+  G        +D ++Y T+ GAVG+L+P  + +D EF + +E  MR     +C RDHLAYRSS+  VKNV+DGDLCE   ALP        + + +  SE+  ++E++R
Sbjct:   96 GFIHLYKFSEDGTSLEFVHKTEVNDIPQVMIPFHNRLLVGVGSALRIYDMGKRKLLRKSEAKGFPRAIVSLH--TQGNRIVVGDLQESVHFVTYLP-----------------MENRLIIFADDTTTRYTTATAIIDYDTVVGGDKFGNLFVNRLPSDVSDQVEDDPTGNRLVYERGYLHGSS---HKLKNLTNYHVGDTVTAIE------KATLVAG-------GRDIVLYTTLGGAVGILVPFVSRDDVEFFQTMELHMRNEAPPLCGRDHLAYRSSYIPVKNVIDGDLCEYFNALPLAKKQAIADELDRTPSEITKKLEDIR 385          
BLAST of Ggra6507.t2 vs. uniprot
Match: SF3B3 (Probable splicing factor 3B subunit 3 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=SF3B3_DICDI)

HSP 1 Score: 198 bits (503), Expect = 4.440e-53
Identity = 119/334 (35.63%), Postives = 180/334 (53.89%), Query Frame = 0
Query:    7 KSHGA--LRVYRIDKKTRKPVFLHETLIEKPSYAVVAFRDMILVGIGRAIRLYDLGKRKLLKKGECKQAVRNIVTAIAVSGGDRVFVGDVQESVTLFKYIAGSGLGRGMDYNSVNAERLGGRFVCIANDTLCRWIVSLVALDYSTVCGSDKFGNVFVLRIPPELASEAEE-LMGVVAIEKGGGIGGSSRGMHQLRVEACVHVGGTVVGLSLGRLNGRTTIEMGPQNEDDESQDAIIYATMDGAVGVLIPLAAWNDAEFVRLVEHEMRRRYTTICARDHLAYRSSFYAVKNVVDGDLCEMLGALPHEDIVKCCNVIGQPVSEVLTRIEELRESWL 337
            KSH +  L +YR     +K   L++T +E+P YA+  F+  ++ G+G++IR+YD+GK+KLL+K E K     IV   ++  GDR+ VGD+QES+   KY                 +R        A+D   RW+ S V LDY TV G+DKFGN+FVLR+P  ++ E EE   G     + G + G+    H+L      H+    VG ++  LN  + +  GP+         I+Y T+ GA+G LIP  +  D +F   +E  MR     +C RDHLAYRS ++ VKN++DGDLCE    L ++  +     + +  SEV+ ++EE+R   L
Sbjct:  957 KSHKSAHLNLYRFIDGGKKLELLYKTEVEEPVYAMAQFQGKLVCGVGKSIRIYDMGKKKLLRKCETKNLPNTIVNIHSL--GDRLVVGDIQESIHFIKY-----------------KRSENMLYVFADDLAPRWMTSSVMLDYDTVAGADKFGNIFVLRLPLLISDEVEEDPTGTKLKFESGTLNGAP---HKLD-----HIANFFVGDTVTTLNKTSLVVGGPE--------VILYTTISGAIGALIPFTSREDVDFFSTLEMNMRSDCLPLCGRDHLAYRSYYFPVKNIIDGDLCEQFSTLNYQKQLSISEELSRSPSEVIKKLEEIRSQKL 1255          
BLAST of Ggra6507.t2 vs. uniprot
Match: A0A662XU68 (CPSF_A domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XU68_9STRA)

HSP 1 Score: 182 bits (463), Expect = 7.450e-52
Identity = 116/324 (35.80%), Postives = 173/324 (53.40%), Query Frame = 0
Query:   10 GALRVYRIDKKTRKPVFLHETLIEKPSYAVVAFRDMILVGIGRAIRLYDLGKRKLLKKGECKQAVRNIVTAIAVSGGDRVFVGDVQESVTLFKYIAGSGLGRGMDYNSVNAERLGGRFVCIANDTLCRWIVSLVALDYSTVCGSDKFGNVFVLRIPPELASEAEELMGVVAIEKGGGIGGSSRGMHQLRVEACVHVGGTVVGLSLGRLNGRTTIEMGPQNEDDESQDAIIYATMDGAVGVLIPLAAWNDAEFVRLVEHEMRRRYTTICARDHLAYRSSFYAVKNVVDGDLCEMLGALPHEDIVKCCNVIGQPVSEVLTRIEELR 333
            G LRVYRI + T+  V +H T I+   +A+  F+  +LV +G+A+R+YDLGK+K+L+K E +     +V   A   GDRV+  D+ ES    KY                 ++   + V  A+D + R+I S V LDY T+CG DKFGNVFV R+P E++ E +   G   +   G + G+   + Q+   A  HVG  V  ++      R ++  G         +AI+YAT+ G +G LIP  +  D +F   +E  MR+    +C RDHL+YRS F  VKNV DGDLCE   +L  E        + +  +EVL ++E++R
Sbjct:   12 GFLRVYRIVEGTQL-VLVHTTEIDDIPHAMCEFQGRLLVSVGKALRIYDLGKKKMLRKCENRNFPSILVELKAA--GDRVYASDMHESFHFVKY-----------------KKEENQLVIFADDCVPRFITSSVLLDYDTLCGGDKFGNVFVSRLPSEVSDEIDNPTGNRILWDSGLLNGAPNKLEQV---AQFHVGDVVTSMA------RASLVPG-------GIEAILYATISGRIGALIPFTSREDVDFYTHLEMYMRQERPPLCGRDHLSYRSYFIPVKNVTDGDLCEQFVSLSPEKQASVAEDLDRTPAEVLKKLEDIR 299          
BLAST of Ggra6507.t2 vs. uniprot
Match: F0Z743 (CPSF domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0Z743_DICPU)

HSP 1 Score: 193 bits (491), Expect = 1.750e-51
Identity = 111/329 (33.74%), Postives = 179/329 (54.41%), Query Frame = 0
Query:   10 GALRVYRIDKKTRKPVFLHETLIEKPSYAVVAFRDMILVGIGRAIRLYDLGKRKLLKKGECKQAVRNIVTAIAVSGGDRVFVGDVQESVTLFKYIAGSGLGRGMDYNSVNAERLGGRFVCIANDTLCRWIVSLVALDYSTVCGSDKFGNVFVLRIPPELASEAEE-LMGVVAIEKGGGIGGSSRGMHQLRVEACVHVGGTVVGLSLGRLNGRTTIEMGPQNEDDESQDAIIYATMDGAVGVLIPLAAWNDAEFVRLVEHEMRRRYTTICARDHLAYRSSFYAVKNVVDGDLCEMLGALPHEDIVKCCNVIGQPVSEVLTRIEELRESWL 337
             ++ +Y+  ++ +K   +++T  E+P YA+  F+  +  G+G+ IR+YD+GK+KLL+K E K     IV   ++  GDR+ VGD+QES+   KY                 ++L       A+D   RWI S V LDY TV G+DKFGN+F+LR+P  ++ E EE   G     + G + G+    H+L      H+     G ++  LN +T++ +G         D ++Y T+ GA+G LIP  +  D +F   +E ++R  +  +C RDHLAYRS ++ VKN++DGDLCE    L  +   +    + +  SEVL ++E++R   L
Sbjct:  939 ASINLYKFTEEGKKLQLVYKTEAEEPVYAMAPFQGRLCAGVGKNIRIYDMGKKKLLRKCETKNLPNTIVNIHSL--GDRLVVGDIQESIHFIKY-----------------KKLENMLYVFADDLAPRWITSSVMLDYDTVAGADKFGNIFILRLPSNVSDEVEEDPTGSKLKFESGLLNGAP---HKLE-----HIANIFAGDAITTLN-KTSLVVG-------GSDVLLYTTISGAIGALIPFVSREDVDFFSSLELQLRNEHAPLCGRDHLAYRSYYFPVKNIIDGDLCEQFITLDPQKQRQIAEELSRSPSEVLKKLEDIRSQKL 1232          
BLAST of Ggra6507.t2 vs. uniprot
Match: A0A662XMA8 (CPSF_A domain-containing protein (Fragment) n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A662XMA8_9STRA)

HSP 1 Score: 183 bits (465), Expect = 2.250e-51
Identity = 116/324 (35.80%), Postives = 174/324 (53.70%), Query Frame = 0
Query:   10 GALRVYRIDKKTRKPVFLHETLIEKPSYAVVAFRDMILVGIGRAIRLYDLGKRKLLKKGECKQAVRNIVTAIAVSGGDRVFVGDVQESVTLFKYIAGSGLGRGMDYNSVNAERLGGRFVCIANDTLCRWIVSLVALDYSTVCGSDKFGNVFVLRIPPELASEAEELMGVVAIEKGGGIGGSSRGMHQLRVEACVHVGGTVVGLSLGRLNGRTTIEMGPQNEDDESQDAIIYATMDGAVGVLIPLAAWNDAEFVRLVEHEMRRRYTTICARDHLAYRSSFYAVKNVVDGDLCEMLGALPHEDIVKCCNVIGQPVSEVLTRIEELR 333
            G LRVYRI + T+  V +H T I+   +A+  F+  +LV +G+A+R+YDLGK+K+L+K E +     +V   A   GDRV+  D+ ES    KY                 ++   + V  A+D + R+I S V LDY T+CG DKFGNVFV R+P E++ E +   G   +   G + G+   + Q+   A  HVG  V  ++      RT++  G         +AI+YAT+ G +G LIP  +  D +F   +E  MR+    +C RDHL+YRS F  VKNV DGDLCE   +L  +        + +  +EVL ++E++R
Sbjct:   80 GFLRVYRIVEGTQL-VLVHTTEIDDIPHAMCEFQGRLLVSVGKALRIYDLGKKKMLRKCENRNFPSILVELKAA--GDRVYASDMHESFHFVKY-----------------KKEENQLVIFADDCVPRFITSSVLLDYDTLCGGDKFGNVFVSRLPSEVSDEIDNPTGNRILWDSGLLNGAPNKLEQV---AQFHVGDVVTSMA------RTSLVPG-------GIEAILYATISGRIGALIPFTSREDVDFYTHLEMYMRQERPPLCGRDHLSYRSYFIPVKNVTDGDLCEQFVSLSPDKQASVAEDLDRTPAEVLKKLEDIR 367          
BLAST of Ggra6507.t2 vs. uniprot
Match: A0A0L0HCC1 (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HCC1_SPIPD)

HSP 1 Score: 192 bits (489), Expect = 3.220e-51
Identity = 118/327 (36.09%), Postives = 174/327 (53.21%), Query Frame = 0
Query:    8 SHGALRVYRIDKKTRKPVFLHETLIEKPSYAVVAFRDMILVGIGRAIRLYDLGKRKLLKKGECKQAVRNIVTAIAVSGGDRVFVGDVQESVTLFKYIAGSGLGRGMDYNSVNAERLGGRFVCIANDTLCRWIVSLVALDYSTVCGSDKFGNVFVLRIPPELASEAEE-LMGVVAIEKGGGIGGSSRGMHQLRVEACVHVGGTVVGLSLGRLNGRTTIEMGPQNEDDESQDAIIYATMDGAVGVLIPLAAWNDAEFVRLVEHEMRRRYTTICARDHLAYRSSFYAVKNVVDGDLCEMLGALPHEDIVKCCNVIGQPVSEVLTRIEELR 333
            S G L  YR          LH+T I+   YA+ AF+  +LVG+G+ +R+YDLGK+KLL+K E KQ   NI+T    + GDR+ VGDVQESV    Y                      R V  A+DT  RWI +   +DY TV G DKFGN+F+ R+P E + E +E   G   + + G + G+    H++   A   +G +   ++      +T I  G        ++ I+Y T+ G +G LIP  +  D EF + +E  MR ++  +C RDHLAYRS +  V+NV+DGDLCE    LP+E   +    + + VSE+  ++E++R
Sbjct:  918 SSGFLHTYRFVDGGNALELLHKTPIDDVPYALCAFQGRLLVGMGKILRIYDLGKKKLLRKCENKQFPNNILTLH--TQGDRIVVGDVQESVHFASY-----------------RHFDNRIVIFADDTTPRWITATTMVDYDTVAGGDKFGNIFIDRLPAETSEEVDEDPTGNKLVYEKGYLQGAP---HKVEHAADFFIGESPTSVT------KTVIVPG-------GREIIVYTTLLGTIGCLIPFQSKEDVEFFQQLEMHMRNKFPPLCGRDHLAYRSYYIPVRNVIDGDLCEQFNLLPNEVKRQIAEDMDRTVSELSKKVEDVR 1209          
BLAST of Ggra6507.t2 vs. uniprot
Match: A0A7M7SUD0 (DNA damage-binding protein 1 n=3 Tax=Echinacea TaxID=7674 RepID=A0A7M7SUD0_STRPU)

HSP 1 Score: 192 bits (487), Expect = 5.950e-51
Identity = 115/327 (35.17%), Postives = 181/327 (55.35%), Query Frame = 0
Query:    8 SHGALRVYRIDKKTRKPVFLHETLIEKPSYAVVAFRDMILVGIGRAIRLYDLGKRKLLKKGECKQAVRNIVTAIAVSGGDRVFVGDVQESVTLFKYIAGSGLGRGMDYNSVNAERLGGRFVCIANDTLCRWIVSLVALDYSTVCGSDKFGNVFVLRIPPELASEAEE-LMGVVAIEKGGGIGGSSRGMHQLRVEACVHVGGTVVGLSLGRLNGRTTIEMGPQNEDDESQDAIIYATMDGAVGVLIPLAAWNDAEFVRLVEHEMRRRYTTICARDHLAYRSSFYAVKNVVDGDLCEMLGALPHEDIVKCCNVIGQPVSEVLTRIEELR 333
            S GA+  Y + ++ +K  FLH+TL++    ++ AF+  +L+GIGR +R+YDLGK+KLL+K E K  + N +T I  +G +RV + DVQES+   KY                 +R   + V  A+D+  RWI +   LD+ TV  +DKFGN+ VLR+P  +    +E   GV A+   G + G+S+   +  V +   +G TV+ L       + T+  G         ++++Y T+ GA+GVL+P  A  D +F + +E  MR  Y  +C RDHL+YRS +Y VKNV+DGDLCE   ++           + +  SEV  ++E++R
Sbjct:  921 SGGAIHTYLLTEEGKKLEFLHKTLVDDVPSSIAAFQGRVLIGIGRLLRIYDLGKKKLLRKCENKH-IPNFITNILTTG-NRVIISDVQESLHFLKY-----------------KRQENQMVIFADDSNPRWITATCLLDHDTVMCADKFGNITVLRLPTSVNDNLDEDPTGVKALWDRGLLNGASQ---KTDVVSSFFIGETVLSLQ------KATLIPG-------GSESVVYTTLSGAIGVLVPFTAHEDHDFFQHLEMHMRSEYAPLCGRDHLSYRSYYYPVKNVIDGDLCEQYNSMELSKQRTVAEELDRNPSEVSKKLEDIR 1212          
BLAST of Ggra6507.t2 vs. uniprot
Match: T1DTH9 (Putative damage-specific dna binding complex subunit ddb1 (Fragment) n=3 Tax=Nyssorhynchus TaxID=44543 RepID=T1DTH9_ANOAQ)

HSP 1 Score: 188 bits (478), Expect = 6.260e-51
Identity = 116/325 (35.69%), Postives = 172/325 (52.92%), Query Frame = 0
Query:   10 GALRVYRIDKKTRKPVFLHETLIEKPSYAVVAFRDMILVGIGRAIRLYDLGKRKLLKKGECKQAVRNIVTAIAVSGGDRVFVGDVQESVTLFKYIAGSGLGRGMDYNSVNAERLGGRFVCIANDTLCRWIVSLVALDYSTVCGSDKFGNVFVLRIPPELASEAEE-LMGVVAIEKGGGIGGSSRGMHQLRVEACVHVGGTVVGLSLGRLNGRTTIEMGPQNEDDESQDAIIYATMDGAVGVLIPLAAWNDAEFVRLVEHEMRRRYTTICARDHLAYRSSFYAVKNVVDGDLCEMLGALPHEDIVKCCNVIGQPVSEVLTRIEELR 333
            G + VYR+D +T +   +H T I+    A+ AF+  +L GIG+ +R+YDLGK+KLL+K E K     IV    +  G RV+V DVQESV   KY                 +R   + +  A+DT  RW+ S   LDY TV   DKFGN+ VLR+P  ++ + +E   G  A+   G + G+S+    +      H+G  V+ L       + T+  G         +++IYATM G VG L+P  +  D +F + +E  MR     +C RDHL+YRS +Y VKNV+DGDLCE   +L         + +G+  SEV  ++E++R
Sbjct:  358 GFIDVYRVDSQTNELEHVHRTEIDDAPGALCAFQGRLLAGIGKVLRMYDLGKKKLLRKCENKHIPNQIVNIQGM--GQRVYVSDVQESVYCLKY-----------------KRPENQLIIFADDTHPRWVTSATLLDYDTVATGDKFGNIAVLRLPHSVSDDVDEDPTGNKALWDRGLLNGASQKAENI---CTFHLGEIVMSLQ------KATLIPG-------GSESLIYATMSGTVGALVPFTSREDYDFFQHLEMHMRNENPPLCGRDHLSYRSYYYPVKNVMDGDLCEQFTSLDPAKQKSIASDLGRTPSEVAKKLEDIR 647          
The following BLAST results are available for this feature:
BLAST of Ggra6507.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5B01.110e-16773.25Splicing factor 3B subunit 3 n=1 Tax=Gracilariopsi... [more]
R7Q6T15.250e-6741.72Putative splicing factor 3B, subunit 3, SF3B3 n=1 ... [more]
A0A4P9YTF01.010e-5434.46CPSF_A domain-containing protein n=1 Tax=Syncephal... [more]
SF3B34.440e-5335.63Probable splicing factor 3B subunit 3 n=1 Tax=Dict... [more]
A0A662XU687.450e-5235.80CPSF_A domain-containing protein n=1 Tax=Nothophyt... [more]
F0Z7431.750e-5133.74CPSF domain-containing protein n=1 Tax=Dictyosteli... [more]
A0A662XMA82.250e-5135.80CPSF_A domain-containing protein (Fragment) n=2 Ta... [more]
A0A0L0HCC13.220e-5136.09Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A7M7SUD05.950e-5135.17DNA damage-binding protein 1 n=3 Tax=Echinacea Tax... [more]
T1DTH96.260e-5135.69Putative damage-specific dna binding complex subun... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..252
e-value: 1.5E-46
score: 161.3
IPR004871Cleavage/polyadenylation specificity factor, A subunit, C-terminalPFAMPF03178CPSF_Acoord: 4..302
e-value: 7.7E-49
score: 166.7
NoneNo IPR availablePANTHERPTHR10644:SF1SPLICING FACTOR 3B SUBUNIT 3coord: 8..310
NoneNo IPR availablePANTHERPTHR10644DNA REPAIR/RNA PROCESSING CPSF FAMILYcoord: 8..310

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:566637..567653 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6507.t2Ggra6507.t2Gracilaria gracilis GNS1m malemRNAtig00000074_pilon 566637..567653 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6507.t2 ID=Ggra6507.t2|Name=Ggra6507.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=339bp
MSEQEQKSHGALRVYRIDKKTRKPVFLHETLIEKPSYAVVAFRDMILVGI
GRAIRLYDLGKRKLLKKGECKQAVRNIVTAIAVSGGDRVFVGDVQESVTL
FKYIAGSGLGRGMDYNSVNAERLGGRFVCIANDTLCRWIVSLVALDYSTV
CGSDKFGNVFVLRIPPELASEAEELMGVVAIEKGGGIGGSSRGMHQLRVE
ACVHVGGTVVGLSLGRLNGRTTIEMGPQNEDDESQDAIIYATMDGAVGVL
IPLAAWNDAEFVRLVEHEMRRRYTTICARDHLAYRSSFYAVKNVVDGDLC
EMLGALPHEDIVKCCNVIGQPVSEVLTRIEELRESWLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR004871Cleavage/polyA-sp_fac_asu_C