Ggra6507.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6507.t2
Unique NameGgra6507.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length339
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:566637..567653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0233171
PFAMsCPSF_A,MMS1_N
Max annot lvl554915|Amoebozoa
KEGG koko:K12830
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0071005,GO:0071011,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Evalue6.58e-53
EggNOG OGsKOG1898@1|root,KOG1898@2759|Eukaryota,3X84G@554915|Amoebozoa
DescriptionMono-functional DNA-alkylating methyl methanesulfonate N-term
COG categoryA
BRITEko00000,ko00001,ko00002,ko03021,ko03036,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6507Ggra6507Gracilaria gracilis GNS1m malegenetig00000074_pilon 566637..570779 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6507.t2.stop1Ggra6507.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 566637..566639 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6507.t2.CDS1Ggra6507.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 566637..567653 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6507.t2.exon1Ggra6507.t2.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 566637..567653 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6507.t2.start1Ggra6507.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 567651..567653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6507.t2Ggra6507.t2Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 566637..567653 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6507.t2 ID=Ggra6507.t2|Name=Ggra6507.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=339bp
MSEQEQKSHGALRVYRIDKKTRKPVFLHETLIEKPSYAVVAFRDMILVGI
GRAIRLYDLGKRKLLKKGECKQAVRNIVTAIAVSGGDRVFVGDVQESVTL
FKYIAGSGLGRGMDYNSVNAERLGGRFVCIANDTLCRWIVSLVALDYSTV
CGSDKFGNVFVLRIPPELASEAEELMGVVAIEKGGGIGGSSRGMHQLRVE
ACVHVGGTVVGLSLGRLNGRTTIEMGPQNEDDESQDAIIYATMDGAVGVL
IPLAAWNDAEFVRLVEHEMRRRYTTICARDHLAYRSSFYAVKNVVDGDLC
EMLGALPHEDIVKCCNVIGQPVSEVLTRIEELRESWLG*
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spliced messenger RNA

>Ggra6507.t2 ID=Ggra6507.t2|Name=Ggra6507.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000074_pilon:566637..567653- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGAACAGGAACAAAAGTCTCACGGAGCACTCCGTGTGTATCGTAT
AGACAAGAAAACAAGAAAGCCTGTATTTCTTCACGAGACATTAATCGAGA
AGCCTTCATATGCAGTGGTAGCTTTTCGAGACATGATTTTGGTTGGTATT
GGTAGAGCTATTCGTCTATATGATCTAGGTAAGCGAAAGCTGTTGAAGAA
GGGAGAGTGTAAACAAGCCGTTCGAAACATAGTCACTGCTATAGCTGTAA
GTGGGGGAGACCGGGTGTTTGTCGGGGACGTGCAGGAATCTGTGACATTG
TTTAAGTATATAGCTGGTTCCGGGTTGGGAAGAGGCATGGACTATAATAG
CGTCAATGCAGAGCGTTTGGGAGGGCGATTCGTGTGTATTGCGAATGACA
CACTTTGCAGATGGATTGTAAGCCTTGTGGCGCTTGATTATAGTACGGTG
TGTGGCAGCGACAAGTTTGGTAACGTCTTTGTTCTTCGCATACCACCAGA
ACTTGCTTCAGAGGCTGAAGAACTTATGGGAGTTGTTGCTATAGAGAAAG
GTGGTGGCATCGGTGGTTCCTCTAGAGGCATGCATCAGTTACGGGTGGAA
GCGTGCGTGCATGTTGGGGGGACAGTTGTTGGGCTTTCTCTTGGCCGCCT
AAATGGGCGAACCACCATCGAGATGGGACCGCAAAATGAGGACGACGAGT
CGCAAGATGCTATAATATATGCAACAATGGATGGGGCGGTTGGAGTGTTG
ATACCATTGGCTGCTTGGAACGATGCTGAATTCGTTCGGCTGGTGGAGCA
TGAGATGCGCAGACGCTACACAACTATTTGTGCAAGAGATCATTTGGCTT
ATCGGTCTTCGTTTTATGCGGTGAAGAATGTTGTTGATGGGGATTTGTGT
GAAATGTTAGGAGCGCTACCCCATGAAGACATTGTGAAGTGCTGCAATGT
TATTGGGCAACCAGTATCAGAGGTATTGACACGGATCGAAGAACTGCGCG
AGAGTTGGCTGGGTTGA
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protein sequence of Ggra6507.t2

>Ggra6507.t2 ID=Ggra6507.t2|Name=Ggra6507.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=339bp
MSEQEQKSHGALRVYRIDKKTRKPVFLHETLIEKPSYAVVAFRDMILVGI
GRAIRLYDLGKRKLLKKGECKQAVRNIVTAIAVSGGDRVFVGDVQESVTL
FKYIAGSGLGRGMDYNSVNAERLGGRFVCIANDTLCRWIVSLVALDYSTV
CGSDKFGNVFVLRIPPELASEAEELMGVVAIEKGGGIGGSSRGMHQLRVE
ACVHVGGTVVGLSLGRLNGRTTIEMGPQNEDDESQDAIIYATMDGAVGVL
IPLAAWNDAEFVRLVEHEMRRRYTTICARDHLAYRSSFYAVKNVVDGDLC
EMLGALPHEDIVKCCNVIGQPVSEVLTRIEELRESWLG*
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mRNA from alignment at tig00000074_pilon:566637..567653-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6507.t2 ID=Ggra6507.t2|Name=Ggra6507.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000074_pilon:566637..567653- (Gracilaria gracilis GNS1m male)
ATGTCTGAACAGGAACAAAAGTCTCACGGAGCACTCCGTGTGTATCGTAT
AGACAAGAAAACAAGAAAGCCTGTATTTCTTCACGAGACATTAATCGAGA
AGCCTTCATATGCAGTGGTAGCTTTTCGAGACATGATTTTGGTTGGTATT
GGTAGAGCTATTCGTCTATATGATCTAGGTAAGCGAAAGCTGTTGAAGAA
GGGAGAGTGTAAACAAGCCGTTCGAAACATAGTCACTGCTATAGCTGTAA
GTGGGGGAGACCGGGTGTTTGTCGGGGACGTGCAGGAATCTGTGACATTG
TTTAAGTATATAGCTGGTTCCGGGTTGGGAAGAGGCATGGACTATAATAG
CGTCAATGCAGAGCGTTTGGGAGGGCGATTCGTGTGTATTGCGAATGACA
CACTTTGCAGATGGATTGTAAGCCTTGTGGCGCTTGATTATAGTACGGTG
TGTGGCAGCGACAAGTTTGGTAACGTCTTTGTTCTTCGCATACCACCAGA
ACTTGCTTCAGAGGCTGAAGAACTTATGGGAGTTGTTGCTATAGAGAAAG
GTGGTGGCATCGGTGGTTCCTCTAGAGGCATGCATCAGTTACGGGTGGAA
GCGTGCGTGCATGTTGGGGGGACAGTTGTTGGGCTTTCTCTTGGCCGCCT
AAATGGGCGAACCACCATCGAGATGGGACCGCAAAATGAGGACGACGAGT
CGCAAGATGCTATAATATATGCAACAATGGATGGGGCGGTTGGAGTGTTG
ATACCATTGGCTGCTTGGAACGATGCTGAATTCGTTCGGCTGGTGGAGCA
TGAGATGCGCAGACGCTACACAACTATTTGTGCAAGAGATCATTTGGCTT
ATCGGTCTTCGTTTTATGCGGTGAAGAATGTTGTTGATGGGGATTTGTGT
GAAATGTTAGGAGCGCTACCCCATGAAGACATTGTGAAGTGCTGCAATGT
TATTGGGCAACCAGTATCAGAGGTATTGACACGGATCGAAGAACTGCGCG
AGAGTTGGCTGGGTTGA
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Coding sequence (CDS) from alignment at tig00000074_pilon:566637..567653-

>Ggra6507.t2 ID=Ggra6507.t2|Name=Ggra6507.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1017bp|location=Sequence derived from alignment at tig00000074_pilon:566637..567653- (Gracilaria gracilis GNS1m male)
ATGTCTGAACAGGAACAAAAGTCTCACGGAGCACTCCGTGTGTATCGTAT
AGACAAGAAAACAAGAAAGCCTGTATTTCTTCACGAGACATTAATCGAGA
AGCCTTCATATGCAGTGGTAGCTTTTCGAGACATGATTTTGGTTGGTATT
GGTAGAGCTATTCGTCTATATGATCTAGGTAAGCGAAAGCTGTTGAAGAA
GGGAGAGTGTAAACAAGCCGTTCGAAACATAGTCACTGCTATAGCTGTAA
GTGGGGGAGACCGGGTGTTTGTCGGGGACGTGCAGGAATCTGTGACATTG
TTTAAGTATATAGCTGGTTCCGGGTTGGGAAGAGGCATGGACTATAATAG
CGTCAATGCAGAGCGTTTGGGAGGGCGATTCGTGTGTATTGCGAATGACA
CACTTTGCAGATGGATTGTAAGCCTTGTGGCGCTTGATTATAGTACGGTG
TGTGGCAGCGACAAGTTTGGTAACGTCTTTGTTCTTCGCATACCACCAGA
ACTTGCTTCAGAGGCTGAAGAACTTATGGGAGTTGTTGCTATAGAGAAAG
GTGGTGGCATCGGTGGTTCCTCTAGAGGCATGCATCAGTTACGGGTGGAA
GCGTGCGTGCATGTTGGGGGGACAGTTGTTGGGCTTTCTCTTGGCCGCCT
AAATGGGCGAACCACCATCGAGATGGGACCGCAAAATGAGGACGACGAGT
CGCAAGATGCTATAATATATGCAACAATGGATGGGGCGGTTGGAGTGTTG
ATACCATTGGCTGCTTGGAACGATGCTGAATTCGTTCGGCTGGTGGAGCA
TGAGATGCGCAGACGCTACACAACTATTTGTGCAAGAGATCATTTGGCTT
ATCGGTCTTCGTTTTATGCGGTGAAGAATGTTGTTGATGGGGATTTGTGT
GAAATGTTAGGAGCGCTACCCCATGAAGACATTGTGAAGTGCTGCAATGT
TATTGGGCAACCAGTATCAGAGGTATTGACACGGATCGAAGAACTGCGCG
AGAGTTGGCTGGGTTGA
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