Ggra6506.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6506.t1
Unique NameGgra6506.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length176
Homology
BLAST of Ggra6506.t1 vs. uniprot
Match: A0A2V3J578 (DNA-directed RNA polymerase II subunit RPB7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J578_9FLOR)

HSP 1 Score: 263 bits (673), Expect = 2.750e-88
Identity = 129/144 (89.58%), Postives = 137/144 (95.14%), Query Frame = 0
Query:   32 MIEVEGTFAGRFGFIVAVLKVEGEIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSIPSDMTYQYKELQEPMWKGSEPEDDIQKDTAVRLRIIGLKIEATEISATATIQDPYLGRLD 175
            M+EVEGTFAGRFGFIVAVLKVEG+IPVAELDD+TGFA+FPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSIPSDM Y++ +  EP WKGSEPEDDI KD +VRLRIIGLKIEATEISATATIQDPYLGRLD
Sbjct:    1 MLEVEGTFAGRFGFIVAVLKVEGDIPVAELDDNTGFAVFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSIPSDMNYKFID-DEPTWKGSEPEDDIVKDVSVRLRIIGLKIEATEISATATIQDPYLGRLD 143          
BLAST of Ggra6506.t1 vs. uniprot
Match: A0A1X6NKR0 (S1 motif domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NKR0_PORUM)

HSP 1 Score: 202 bits (513), Expect = 1.640e-63
Identity = 98/173 (56.65%), Postives = 130/173 (75.14%), Query Frame = 0
Query:    3 FFVLVLNRRVQIHPKFFGASLQEILTKRLMIEVEGTFAGRFGFIVAVLKVEGEIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSIPSDMTYQYKELQEPMWKGSEPEDDIQKDTAVRLRIIGLKIEATEISATATIQDPYLGRLD 175
            FF++ L RR+ + P+ F A L + LT+RLM EVEG+FAGR GF++ V+ +   IP  ELD +TGFA+FPL Y+A+VFRPFKGEVLDSVV KVT+HGFFA+ GPL +FVSH+ +P DM Y   + Q   W+  +  D I +D +VRLRI+GLKIEATEISAT +++D YLG ++
Sbjct:    2 FFLVDLERRIHMPPRQFNAKLTDSLTQRLMQEVEGSFAGRHGFVIMVVHLHEPIPHGELDHTTGFAVFPLKYKALVFRPFKGEVLDSVVDKVTQHGFFADAGPLKIFVSHHLLPQDMGY---DAQAECWRSVDGGDLIARDASVRLRILGLKIEATEISATGSVRDDYLGTVE 171          
BLAST of Ggra6506.t1 vs. uniprot
Match: A0A7S3E9V8 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E9V8_9RHOD)

HSP 1 Score: 197 bits (502), Expect = 1.050e-60
Identity = 95/172 (55.23%), Postives = 126/172 (73.26%), Query Frame = 0
Query:    1 MPFFVLVLNRRVQIHPKFFGASLQEILTKRLMIEVEGTFAGRFGFIVAVLKVEGEIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSIPSDMTYQYKELQEPMWKGSEPEDDIQKDTAVRLRIIGLKIEATEISATATIQDPYLG 172
            M FFV+ L + +Q+HP+FF ASL + L +RL+ EVEG FAGR GFIV V K+E  IPV E+D STGFA+FP+ Y A+VFRPF+GEVLDS+VT+V  HGF A  GPL +FVSH+ +PSDM Y   + Q   W      D I+  TAVRL++IGLK+EAT++ AT ++++ +LG
Sbjct:   78 MGFFVVKLVKDLQVHPRFFNASLSDTLKQRLISEVEGQFAGRHGFIVIVQKIEEPIPVGEIDSSTGFAVFPIKYHALVFRPFRGEVLDSIVTRVLPHGFLASAGPLDIFVSHHCLPSDMKY---DQQGECWVSINQADKIETKTAVRLKLIGLKVEATKMHATGSMKEDFLG 246          
BLAST of Ggra6506.t1 vs. uniprot
Match: A0A7S0BQA4 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BQA4_9RHOD)

HSP 1 Score: 193 bits (491), Expect = 4.400e-60
Identity = 94/172 (54.65%), Postives = 125/172 (72.67%), Query Frame = 0
Query:    1 MPFFVLVLNRRVQIHPKFFGASLQEILTKRLMIEVEGTFAGRFGFIVAVLKVEGEIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSIPSDMTYQYKELQEPMWKGSEPEDDIQKDTAVRLRIIGLKIEATEISATATIQDPYLG 172
            M FFV+ L + +Q+HP+FF ASL + L +RL+ EVEG FAGR GFIV V K+E  IPV E+D STGFA+FP+ Y A+VFRPF+GEVLDS+VT+V   GF A  GPL +FVSH+ +PSDM Y   + Q   W      D I+  TAVRL++IGLK+EAT++ AT ++++ +LG
Sbjct:    1 MGFFVVKLVKYLQVHPRFFNASLSDTLKQRLISEVEGQFAGRHGFIVIVQKIEEPIPVGEIDSSTGFAVFPIKYHALVFRPFRGEVLDSIVTRVLPLGFLASAGPLDIFVSHHCLPSDMKY---DQQGECWVSINQADKIENKTAVRLKLIGLKVEATKMLATGSMKEDFLG 169          
BLAST of Ggra6506.t1 vs. uniprot
Match: A0A7S1ERI9 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ERI9_9RHOD)

HSP 1 Score: 187 bits (476), Expect = 6.670e-58
Identity = 89/170 (52.35%), Postives = 128/170 (75.29%), Query Frame = 0
Query:    3 FFVLVLNRRVQIHPKFFGASLQEILTKRLMIEVEGTFAGRFGFIVAVLKVEGEIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSIPSDMTYQYKELQEPMWKGSEPEDDIQKDTAVRLRIIGLKIEATEISATATIQDPYLG 172
            ++VL L RRVQI P+ F  ++++ + ++L+ +VEG FAG  GF+VAV+ +   +P  +LDD TGFAIFP+ Y A+V+RPFK EV+D++V++VT+HGFFAE GPLT+FVSH+ IP DM YQ   + E  +  ++  + I +DT VRL+IIGLKIE T+ISAT +++D YLG
Sbjct:    2 YYVLQLQRRVQIEPRLFNRNIEQTIIQKLINDVEGKFAGGNGFVVAVINLVHGVPSGQLDDGTGFAIFPVTYNAIVYRPFKNEVVDAIVSRVTQHGFFAEAGPLTIFVSHHLIPEDMAYQ--SMPEG-FVSTDQGETITRDTKVRLKIIGLKIEVTDISATGSMRDDYLG 168          
BLAST of Ggra6506.t1 vs. uniprot
Match: M2WSF9 (DNA-directed RNA polymerase II subunit G n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WSF9_GALSU)

HSP 1 Score: 178 bits (451), Expect = 4.440e-54
Identity = 89/175 (50.86%), Postives = 123/175 (70.29%), Query Frame = 0
Query:    1 MPFFVLVLNRRVQIHPKFFGASLQEILTKRLMIEVEGTFAGRFGFIVAVLKVEGEIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSIPSDMTYQYKELQEPMWKGSEPEDDIQKDTAVRLRIIGLKIEATEISATATIQDPYLGRLD 175
            M FF + L + V++HP+ F + L+E L + LM EVEGT +GRFGF+V+VL+V   +P   L +  GFA++PL Y+A+VFRPFKGEVLD+VVT VT HG FA+ GPLT+FVS + IPSDMT+   E         E  + IQ+D+A+RLR+ G+KI+A+  +A  TI D YLG ++
Sbjct:    1 MGFFQVELTKNVRVHPRHFHSKLKETLIQTLMDEVEGTVSGRFGFVVSVLEVLQPLPKGILREGFGFAVYPLKYKALVFRPFKGEVLDAVVTNVTRHGIFAQVGPLTIFVSRHQIPSDMTHD--EETASYISVVEKAERIQRDSAIRLRVNGIKIDASSFTAVGTILDDYLGLIE 173          
BLAST of Ggra6506.t1 vs. uniprot
Match: B9GGV6 (Uncharacterized protein n=5 Tax=Saliceae TaxID=238069 RepID=B9GGV6_POPTR)

HSP 1 Score: 171 bits (434), Expect = 1.850e-51
Identity = 85/170 (50.00%), Postives = 120/170 (70.59%), Query Frame = 0
Query:    3 FFVLVLNRRVQIHPKFFGASLQEILTKRLMIEVEGTFAGRFGFIVAVLKVEGEIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSIPSDMTYQYKELQEPMWKGSEPEDDIQKDTAVRLRIIGLKIEATEISATATIQDPYLG 172
            FF +VL R +Q+HP+FFG +L+E +  +LM +VEGT +GR GF+VA+  +E  I    + D TGF  FP+ YQ VVFRPFKGE+L++VVT V + GFFAE GP+ +FVS++ IP DM +Q  ++  P +  S+    IQKD+ VRL+IIG +++ATEI    TI+D +LG
Sbjct:    2 FFHIVLERNMQLHPRFFGRNLRENIVSKLMKDVEGTCSGRHGFVVAITGIEN-IGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQTGDM--PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLG 168          
BLAST of Ggra6506.t1 vs. uniprot
Match: RPB7 (DNA-directed RNA polymerase II subunit RPB7 n=73 Tax=Eukaryota TaxID=2759 RepID=RPB7_SOYBN)

HSP 1 Score: 170 bits (431), Expect = 5.280e-51
Identity = 85/170 (50.00%), Postives = 120/170 (70.59%), Query Frame = 0
Query:    3 FFVLVLNRRVQIHPKFFGASLQEILTKRLMIEVEGTFAGRFGFIVAVLKVEGEIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSIPSDMTYQYKELQEPMWKGSEPEDDIQKDTAVRLRIIGLKIEATEISATATIQDPYLG 172
            FF +VL R +Q+HP++FG +L++ L  +LM +VEGT +GR GF+VAV  +E  I    + D TGF  FP+ YQ VVFRPFKGE+L++VVT V + GFFAE GP+ +FVS++ IP DM +Q  ++  P +  S+    IQKD+ VRL+IIG +++ATEI    TI+D +LG
Sbjct:    2 FFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIEN-IGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDM--PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLG 168          
BLAST of Ggra6506.t1 vs. uniprot
Match: M4CR91 (Uncharacterized protein n=9 Tax=Brassica TaxID=3705 RepID=M4CR91_BRARP)

HSP 1 Score: 168 bits (426), Expect = 3.120e-50
Identity = 83/170 (48.82%), Postives = 119/170 (70.00%), Query Frame = 0
Query:    3 FFVLVLNRRVQIHPKFFGASLQEILTKRLMIEVEGTFAGRFGFIVAVLKVEGEIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSIPSDMTYQYKELQEPMWKGSEPEDDIQKDTAVRLRIIGLKIEATEISATATIQDPYLG 172
            FF +VL R +Q+HP+FFG +L+E L  +L+ +VEGT +GR GF++AV  +E  I    + D T F  FP+ Y+ VVFRPF+GEVL++VVT+V +HGFFAE GPL +FVS++ IP DM YQ  ++  P +  S+    IQ+D  VRL++ G  I+ATEIS   +I++ +LG
Sbjct:    2 FFHIVLERNMQLHPRFFGQNLRENLVSKLIKDVEGTISGRHGFVLAVTGIES-IGKGLIRDGTPFVTFPVKYRCVVFRPFEGEVLEAVVTRVVQHGFFAEAGPLKIFVSNHCIPDDMEYQAGDM--PTYTKSDGSVRIQEDCEVRLKVFGFSIDATEISCVGSIKERFLG 168          
BLAST of Ggra6506.t1 vs. uniprot
Match: A0A1Y1I9G3 (DNA-directed RNA polymerase II subunit 7 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I9G3_KLENI)

HSP 1 Score: 168 bits (426), Expect = 3.120e-50
Identity = 87/172 (50.58%), Postives = 120/172 (69.77%), Query Frame = 0
Query:    3 FFVLVLNRRVQIHPKFFGASLQEILTKRLMIEVEGTFAGRFGFIVAVLKVEGEIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSIPSDMTYQYKELQEPMWKGSEPEDDIQKDTAVRLRIIGLKIEATEISATATIQDPYLGRL 174
            FF +VL R + +HP+FFG  L++ LT +L+ +VEG   G+ GFIVAV  V+ +    E+   TG   FP++Y A+VFRPFKGEVL+ VVT+V + GFFAE GPL VFVS++ IP D+T+     QEP +K    E  IQK+T VRL+I+G++I+AT ISA  TI+D +LG +
Sbjct:    2 FFHIVLERTMLLHPRFFGPKLRDTLTHQLLQDVEGRCDGKNGFIVAVTNVDPKGS-GEITSGTGMVKFPVSYNALVFRPFKGEVLECVVTQVFKMGFFAEAGPLQVFVSNHLIPDDLTFD--STQEPCFKSDTGEWRIQKETEVRLKIVGMRIDATNISAIGTIKDDFLGEI 170          
The following BLAST results are available for this feature:
BLAST of Ggra6506.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5782.750e-8889.58DNA-directed RNA polymerase II subunit RPB7 n=1 Ta... [more]
A0A1X6NKR01.640e-6356.65S1 motif domain-containing protein n=1 Tax=Porphyr... [more]
A0A7S3E9V81.050e-6055.23Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0BQA44.400e-6054.65Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S1ERI96.670e-5852.35Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
M2WSF94.440e-5450.86DNA-directed RNA polymerase II subunit G n=1 Tax=G... [more]
B9GGV61.850e-5150.00Uncharacterized protein n=5 Tax=Saliceae TaxID=238... [more]
RPB75.280e-5150.00DNA-directed RNA polymerase II subunit RPB7 n=73 T... [more]
M4CR913.120e-5048.82Uncharacterized protein n=9 Tax=Brassica TaxID=370... [more]
A0A1Y1I9G33.120e-5050.58DNA-directed RNA polymerase II subunit 7 n=1 Tax=K... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 83..174
e-value: 6.8E-30
score: 104.9
NoneNo IPR availablePANTHERPTHR12709:SF4DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7coord: 3..172
NoneNo IPR availableCDDcd04329RNAP_II_Rpb7_Ncoord: 3..83
e-value: 1.31572E-22
score: 84.1559
IPR005576RNA polymerase Rpb7-like , N-terminalPFAMPF03876SHS2_Rpb7-Ncoord: 11..52
e-value: 1.9E-5
score: 24.9
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilyGENE3D3.30.1490.120coord: 1..82
e-value: 6.3E-19
score: 70.1
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilySUPERFAMILY88798N-terminal, heterodimerisation domain of RBP7 (RpoE)coord: 3..80
IPR003029S1 domainPFAMPF00575S1coord: 80..161
e-value: 8.3E-10
score: 38.9
IPR045113RNA polymerase subunit Rpb7-likePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 3..172
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 81..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:565519..566046 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6506.t1Ggra6506.t1Gracilaria gracilis GNS1m malemRNAtig00000074_pilon 565519..566046 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6506.t1 ID=Ggra6506.t1|Name=Ggra6506.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=176bp
MPFFVLVLNRRVQIHPKFFGASLQEILTKRLMIEVEGTFAGRFGFIVAVL
KVEGEIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFF
AECGPLTVFVSHYSIPSDMTYQYKELQEPMWKGSEPEDDIQKDTAVRLRI
IGLKIEATEISATATIQDPYLGRLD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005576Rpb7-like_N
IPR036898RNA_pol_Rpb7-like_N_sf
IPR003029S1_domain
IPR045113Rpb7-like
IPR012340NA-bd_OB-fold