Ggra6488.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6488.t1
Unique NameGgra6488.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length418
Homology
BLAST of Ggra6488.t1 vs. uniprot
Match: A0A2V3IRG0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRG0_9FLOR)

HSP 1 Score: 93.6 bits (231), Expect = 1.110e-17
Identity = 53/193 (27.46%), Postives = 101/193 (52.33%), Query Frame = 0
Query:  172 LQVINLKFNSLKDGYVRVTERMMIEHFPTLIAKTNVSDAVRERFMIGVVTGIGTGKLLLETQNGKKIEINAGADIEGVAVTGDARHRAQSKRAIQSDGVVGVNVLCFLVKTYAEHTKYKVSRAILVLKGDEPKFQRISKYLKSGRGIPS---------------HIVEG--ETLHGEDRGEYERITRQQGVVP 347
            L V++    S   G  R+ ++ + ++F +LI +T++   +RERF+IGV+TG+ TGKL   T+     ++ A   +     +         +  +   GV+GV ++CFLV+   +  +Y++S+AI V++GDE +F+   ++L  GRG+ +               H+ +   + L  E R  ++R+T + G +P
Sbjct:  123 LAVVDEAKKSAGRGITRLIQQKVHKYFASLITETSLDSHIRERFLIGVITGVITGKLEAITERTSSAQMAANTTVNAANASLAGTATTVRRVGLYGRGVIGVKMVCFLVQCDVKTERYRISKAIPVIRGDEERFRISRRFLNGGRGLRNLLWISRRGSYLFAACHVTDANDQILDNETRVTFKRLTTECGTMP 315          
BLAST of Ggra6488.t1 vs. uniprot
Match: A0A2V3INU7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INU7_9FLOR)

HSP 1 Score: 89.0 bits (219), Expect = 4.460e-16
Identity = 72/230 (31.30%), Postives = 110/230 (47.83%), Query Frame = 0
Query:  164 NDKDHAARLQVINLKFNSLKDGYVRVTERMMIEH-----FPTLIAKTNVSDAVRERFMIGVVTGIGTGKLLLETQNGKKIEINAGADIEGVAVTGDARHRAQSKRAIQSDGVVGVNVLCFLVKTYAEHTKYKVSRAILVLKGDEPKFQRISKYLKSGRG---------------IPSHIVEG--ETLHGEDRGEYERITRQQGVVPGLLS--MGDAVSEEEQLLEKSFGG 369
            N+K  AAR Q ++L        Y R     +IEH     F +LI +T +   +RE F IGV+TG+ TGKL   T+     +  A A     AV  + R R   +      G++GVN++CFLV        YK+S+AI V++ DE +F    K+LKSGRG                  H+ +   ++L  + R ++ R+T++ G +P  L     +     +  + KSFGG
Sbjct:   78 NEKLAAARRQFVDLAVVDEAKKYARRGITRLIEHNVHKYFASLITRTALDLHIRENFFIGVITGVITGKLDSITERILFAQAAARA-----AVNDERRVRLYGR------GIIGVNMVCFLVHCDVNALMYKISKAIPVIRADEERFTVSRKFLKSGRGPKRLLWISRRGEHLFAACHLTDANDQSLDNDTRIKFIRLTKECGQMPSELEPLQWNEDGNSDDRVWKSFGG 296          
The following BLAST results are available for this feature:
BLAST of Ggra6488.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IRG01.110e-1727.46Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3INU74.460e-1631.30Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..41
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..417
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 67..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:382501..384458 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6488.t1Ggra6488.t1Gracilaria gracilis GNS1m malemRNAtig00000074_pilon 382501..384458 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6488.t1 ID=Ggra6488.t1|Name=Ggra6488.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=418bp
MSNSLAFSSSIALPLSRTSTPASPVSRAPPRPRHKSRNTGPICARLDLRD
ERTKQLDQAAAQRQAIEDPCPGPYAHYAEHLNGRAAMMGFFIALVVEATS
GVTINRQIELIGVASAKQLFLAFAPFIDLFSRSLLHLSRENQLSNGGAVS
LSAFFQSLGVGGVNDKDHAARLQVINLKFNSLKDGYVRVTERMMIEHFPT
LIAKTNVSDAVRERFMIGVVTGIGTGKLLLETQNGKKIEINAGADIEGVA
VTGDARHRAQSKRAIQSDGVVGVNVLCFLVKTYAEHTKYKVSRAILVLKG
DEPKFQRISKYLKSGRGIPSHIVEGETLHGEDRGEYERITRQQGVVPGLL
SMGDAVSEEEQLLEKSFGGVLGSRLWNPEQQENNGLNSFFIATDMQGLAD
IDALQDDDIPWMMDFDA*
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