Ggra6488.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6488.t1
Unique NameGgra6488.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length418
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:382501..384458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6488Ggra6488Gracilaria gracilis GNS1m malegenetig00000074_pilon 382501..384458 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6488.t1Ggra6488.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 382501..384458 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6488.t1.stop1Ggra6488.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 382501..382503 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6488.t1.CDS1Ggra6488.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 382501..382799 -
Ggra6488.t1.CDS2Ggra6488.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000074_pilon 382844..383385 -
Ggra6488.t1.CDS3Ggra6488.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000074_pilon 384046..384458 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6488.t1.exon1Ggra6488.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 382501..382799 -
Ggra6488.t1.exon2Ggra6488.t1.exon2Gracilaria gracilis GNS1m maleexontig00000074_pilon 382844..383385 -
Ggra6488.t1.exon3Ggra6488.t1.exon3Gracilaria gracilis GNS1m maleexontig00000074_pilon 384046..384458 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6488.t1.intron1Ggra6488.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000074_pilon 382800..382843 -
Ggra6488.t1.intron2Ggra6488.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000074_pilon 383386..384045 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6488.t1.start1Ggra6488.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 384456..384458 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6488.t1 ID=Ggra6488.t1|Name=Ggra6488.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=418bp
MSNSLAFSSSIALPLSRTSTPASPVSRAPPRPRHKSRNTGPICARLDLRD
ERTKQLDQAAAQRQAIEDPCPGPYAHYAEHLNGRAAMMGFFIALVVEATS
GVTINRQIELIGVASAKQLFLAFAPFIDLFSRSLLHLSRENQLSNGGAVS
LSAFFQSLGVGGVNDKDHAARLQVINLKFNSLKDGYVRVTERMMIEHFPT
LIAKTNVSDAVRERFMIGVVTGIGTGKLLLETQNGKKIEINAGADIEGVA
VTGDARHRAQSKRAIQSDGVVGVNVLCFLVKTYAEHTKYKVSRAILVLKG
DEPKFQRISKYLKSGRGIPSHIVEGETLHGEDRGEYERITRQQGVVPGLL
SMGDAVSEEEQLLEKSFGGVLGSRLWNPEQQENNGLNSFFIATDMQGLAD
IDALQDDDIPWMMDFDA*
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spliced messenger RNA

>Ggra6488.t1 ID=Ggra6488.t1|Name=Ggra6488.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1254bp|location=Sequence derived from alignment at tig00000074_pilon:382501..384458- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAACTCTCTCGCCTTCTCGTCATCGATTGCGCTTCCGCTTTCCCG
CACGTCCACCCCCGCCTCACCCGTCTCGCGCGCACCTCCGCGTCCACGCC
ACAAATCTCGCAACACGGGTCCAATCTGCGCAAGGCTGGACCTCAGGGAC
GAGCGCACCAAGCAACTCGACCAAGCCGCGGCGCAGCGCCAGGCCATCGA
AGACCCGTGTCCGGGGCCATATGCGCACTATGCCGAGCATCTCAATGGTC
GCGCCGCCATGATGGGATTCTTCATCGCCTTGGTGGTGGAGGCAACCTCC
GGCGTCACCATCAATCGCCAAATCGAACTCATTGGAGTTGCCTCGGCCAA
GCAGCTGTTCCTCGCCTTCGCCCCTTTCATAGACCTGTTTTCGCGCAGCT
TGTTGCATCTCTCGAGGGAAAACCAACTGTCGAATGGTGGCGCCGTCAGC
CTCAGTGCCTTTTTTCAAAGTCTGGGTGTAGGAGGAGTAAACGATAAAGA
TCACGCAGCAAGGCTTCAAGTCATCAATCTGAAGTTTAACTCGTTGAAAG
ATGGATACGTCAGAGTCACGGAGCGTATGATGATCGAGCACTTTCCAACA
CTGATTGCAAAGACCAACGTGAGCGACGCCGTTCGCGAGCGTTTTATGAT
CGGCGTTGTGACCGGTATTGGTACAGGAAAACTCTTGCTGGAGACGCAGA
ATGGGAAGAAGATTGAAATAAATGCTGGTGCTGACATCGAAGGGGTTGCA
GTAACTGGGGATGCACGGCACAGGGCTCAATCAAAACGAGCTATTCAGAG
TGATGGTGTCGTCGGAGTGAACGTGCTTTGTTTCCTGGTTAAGACATACG
CGGAACACACAAAGTACAAGGTATCAAGGGCTATCTTGGTTTTGAAAGGT
GATGAACCAAAATTTCAAAGAATTAGCAAATACCTAAAGAGCGGAAGGGG
AATTCCCAGTCATATCGTTGAGGGTGAAACGCTTCATGGAGAAGACCGTG
GAGAGTATGAAAGAATTACAAGACAGCAGGGAGTAGTCCCAGGTTTATTG
TCGATGGGGGATGCCGTATCAGAGGAAGAGCAGCTCCTTGAAAAGAGTTT
TGGGGGTGTGCTCGGGAGTCGCTTGTGGAATCCGGAACAGCAGGAGAACA
ATGGCTTGAACTCGTTTTTCATAGCAACTGACATGCAAGGGTTGGCTGAT
ATCGATGCTTTGCAGGATGATGATATACCTTGGATGATGGATTTTGACGC
GTAG
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protein sequence of Ggra6488.t1

>Ggra6488.t1 ID=Ggra6488.t1|Name=Ggra6488.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=418bp
MSNSLAFSSSIALPLSRTSTPASPVSRAPPRPRHKSRNTGPICARLDLRD
ERTKQLDQAAAQRQAIEDPCPGPYAHYAEHLNGRAAMMGFFIALVVEATS
GVTINRQIELIGVASAKQLFLAFAPFIDLFSRSLLHLSRENQLSNGGAVS
LSAFFQSLGVGGVNDKDHAARLQVINLKFNSLKDGYVRVTERMMIEHFPT
LIAKTNVSDAVRERFMIGVVTGIGTGKLLLETQNGKKIEINAGADIEGVA
VTGDARHRAQSKRAIQSDGVVGVNVLCFLVKTYAEHTKYKVSRAILVLKG
DEPKFQRISKYLKSGRGIPSHIVEGETLHGEDRGEYERITRQQGVVPGLL
SMGDAVSEEEQLLEKSFGGVLGSRLWNPEQQENNGLNSFFIATDMQGLAD
IDALQDDDIPWMMDFDA*
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mRNA from alignment at tig00000074_pilon:382501..384458-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6488.t1 ID=Ggra6488.t1|Name=Ggra6488.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1958bp|location=Sequence derived from alignment at tig00000074_pilon:382501..384458- (Gracilaria gracilis GNS1m male)
ATGTCCAACTCTCTCGCCTTCTCGTCATCGATTGCGCTTCCGCTTTCCCG
CACGTCCACCCCCGCCTCACCCGTCTCGCGCGCACCTCCGCGTCCACGCC
ACAAATCTCGCAACACGGGTCCAATCTGCGCAAGGCTGGACCTCAGGGAC
GAGCGCACCAAGCAACTCGACCAAGCCGCGGCGCAGCGCCAGGCCATCGA
AGACCCGTGTCCGGGGCCATATGCGCACTATGCCGAGCATCTCAATGGTC
GCGCCGCCATGATGGGATTCTTCATCGCCTTGGTGGTGGAGGCAACCTCC
GGCGTCACCATCAATCGCCAAATCGAACTCATTGGAGTTGCCTCGGCCAA
GCAGCTGTTCCTCGCCTTCGCCCCTTTCATAGACCTGTTTTCGCGCAGCT
TGTTGCATCTCTCGTAAAACCACAATATTCCGGCCTCCCTTTTTGGGAGC
GAGAAGTGCATCTCTCAAACTTGACAATGCTTCCACTTGTACCATTCAAG
ATCGCATACTTGTTTCTCTATCCTTCCTCCATGTAAATCATGTTGCTCAA
TGCAAGAACGCCGGTTGCGAAAGAAATGCAGACTAGGGCACAAATCCTTG
GTCACACATACGGTTGTTAGTTTTTTTCCGGCCCACGTGGTCGACATATA
CCCTGTCCATACAACGCGCTACTGGTTTTCAAAAAACGGTGAAGAGCCCT
TGAAACTCAGGTTTGGCCCCAAGCCAAAACAAATACACACAATAAATGCG
CGTACTTGCATTTAAGCATGACTAGGCTCCACTGACCGTTTTGGACGCCC
TCATAGACTGCAGAGAACCTGCTTTCAAGATATGATGAATCATAGTAACA
ACACAACAGATCGCACTGCGCTTTCCTGGGGGTTCCACCTGCAGTGAGTT
GCCGCCAATAAACATCTTTTGCACACTCCAGTGCCCCAGAACGCAACACT
TAAAGTACAGCGTCAAACTGAATTTGAAACAGATGTGGTTGCTCAGCTTA
AGAGGCAAGGATAAGAAAGCTTAGGATCTATTCACTTAGCAAGCTCGGAT
AGCAATATCCTTATTGTACGTAGGAGGGAAAACCAACTGTCGAATGGTGG
CGCCGTCAGCCTCAGTGCCTTTTTTCAAAGTCTGGGTGTAGGAGGAGTAA
ACGATAAAGATCACGCAGCAAGGCTTCAAGTCATCAATCTGAAGTTTAAC
TCGTTGAAAGATGGATACGTCAGAGTCACGGAGCGTATGATGATCGAGCA
CTTTCCAACACTGATTGCAAAGACCAACGTGAGCGACGCCGTTCGCGAGC
GTTTTATGATCGGCGTTGTGACCGGTATTGGTACAGGAAAACTCTTGCTG
GAGACGCAGAATGGGAAGAAGATTGAAATAAATGCTGGTGCTGACATCGA
AGGGGTTGCAGTAACTGGGGATGCACGGCACAGGGCTCAATCAAAACGAG
CTATTCAGAGTGATGGTGTCGTCGGAGTGAACGTGCTTTGTTTCCTGGTT
AAGACATACGCGGAACACACAAAGTACAAGGTATCAAGGGCTATCTTGGT
TTTGAAAGGTGATGAACCAAAATTTCAAAGAATTAGCAAATACCTAAAGA
GCGGAAGGGGAATTCGTAAGGTTTTGAAGATCTTCAAAAAAACCATCACT
TATTTGCAGCCAGTCATATCGTTGAGGGTGAAACGCTTCATGGAGAAGAC
CGTGGAGAGTATGAAAGAATTACAAGACAGCAGGGAGTAGTCCCAGGTTT
ATTGTCGATGGGGGATGCCGTATCAGAGGAAGAGCAGCTCCTTGAAAAGA
GTTTTGGGGGTGTGCTCGGGAGTCGCTTGTGGAATCCGGAACAGCAGGAG
AACAATGGCTTGAACTCGTTTTTCATAGCAACTGACATGCAAGGGTTGGC
TGATATCGATGCTTTGCAGGATGATGATATACCTTGGATGATGGATTTTG
ACGCGTAG
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Coding sequence (CDS) from alignment at tig00000074_pilon:382501..384458-

>Ggra6488.t1 ID=Ggra6488.t1|Name=Ggra6488.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1254bp|location=Sequence derived from alignment at tig00000074_pilon:382501..384458- (Gracilaria gracilis GNS1m male)
ATGTCCAACTCTCTCGCCTTCTCGTCATCGATTGCGCTTCCGCTTTCCCG
CACGTCCACCCCCGCCTCACCCGTCTCGCGCGCACCTCCGCGTCCACGCC
ACAAATCTCGCAACACGGGTCCAATCTGCGCAAGGCTGGACCTCAGGGAC
GAGCGCACCAAGCAACTCGACCAAGCCGCGGCGCAGCGCCAGGCCATCGA
AGACCCGTGTCCGGGGCCATATGCGCACTATGCCGAGCATCTCAATGGTC
GCGCCGCCATGATGGGATTCTTCATCGCCTTGGTGGTGGAGGCAACCTCC
GGCGTCACCATCAATCGCCAAATCGAACTCATTGGAGTTGCCTCGGCCAA
GCAGCTGTTCCTCGCCTTCGCCCCTTTCATAGACCTGTTTTCGCGCAGCT
TGTTGCATCTCTCGAGGGAAAACCAACTGTCGAATGGTGGCGCCGTCAGC
CTCAGTGCCTTTTTTCAAAGTCTGGGTGTAGGAGGAGTAAACGATAAAGA
TCACGCAGCAAGGCTTCAAGTCATCAATCTGAAGTTTAACTCGTTGAAAG
ATGGATACGTCAGAGTCACGGAGCGTATGATGATCGAGCACTTTCCAACA
CTGATTGCAAAGACCAACGTGAGCGACGCCGTTCGCGAGCGTTTTATGAT
CGGCGTTGTGACCGGTATTGGTACAGGAAAACTCTTGCTGGAGACGCAGA
ATGGGAAGAAGATTGAAATAAATGCTGGTGCTGACATCGAAGGGGTTGCA
GTAACTGGGGATGCACGGCACAGGGCTCAATCAAAACGAGCTATTCAGAG
TGATGGTGTCGTCGGAGTGAACGTGCTTTGTTTCCTGGTTAAGACATACG
CGGAACACACAAAGTACAAGGTATCAAGGGCTATCTTGGTTTTGAAAGGT
GATGAACCAAAATTTCAAAGAATTAGCAAATACCTAAAGAGCGGAAGGGG
AATTCCCAGTCATATCGTTGAGGGTGAAACGCTTCATGGAGAAGACCGTG
GAGAGTATGAAAGAATTACAAGACAGCAGGGAGTAGTCCCAGGTTTATTG
TCGATGGGGGATGCCGTATCAGAGGAAGAGCAGCTCCTTGAAAAGAGTTT
TGGGGGTGTGCTCGGGAGTCGCTTGTGGAATCCGGAACAGCAGGAGAACA
ATGGCTTGAACTCGTTTTTCATAGCAACTGACATGCAAGGGTTGGCTGAT
ATCGATGCTTTGCAGGATGATGATATACCTTGGATGATGGATTTTGACGC
GTAG
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