Ggra6483.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6483.t1
Unique NameGgra6483.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length242
Homology
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BLAST of Ggra6483.t1 vs. uniprot
Match: R7QGX8 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QGX8_CHOCR)

HSP 1 Score: 165 bits (417), Expect = 2.140e-47
Identity = 92/195 (47.18%), Postives = 127/195 (65.13%), Query Frame = 0 
Query:   24 YLVLGCKAVQLEHVAFVILTSSYAIIANLYIRRTYYSLPLAPLSSCSLAPMRNSVRLLFPFTFVFSLSVPTLLLITAGKSPIDGTQTQLYPILAPHLYLMICQILVETVGFIFSTIFTLYVRFGITVAFVVYRLPVALEWYRQAEKYARSEDAALLPPAALPLTQAAAILNIVYWLFALLCFLLLYCLPAIVRNP 218
            YL +  +AV L HV FV +T+ YA +AN ++ R   S P APL   SL+P +NS RLLFPFT   SL  P +LL  +  +      +QL  ++APHL+LM+ QI++ET+GF+    + LYVR G+T+A V YRL V + WY  A  + RS +A+ + P    L QA A+LN+V+W F+LLC+LLLYCLPA+ R P
Sbjct:    3 YLAVYLRAVPLSHVLFVCVTAGYASLANYFVLRDSNSFPAAPLRPRSLSPTKNSTRLLFPFTLFLSLVGPAVLLTISPAT--SQRPSQLQQVIAPHLFLMLSQIVMETIGFLLFNSYVLYVRLGVTIAMVSYRLRVIVTWYHMAVAWTRSVEASKVLPFVPSLVQATAVLNLVFWSFSLLCYLLLYCLPAVCREP 195
The following BLAST results are available for this feature:
BLAST of Ggra6483.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7QGX82.140e-4747.18Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 156..194
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 55..79
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 101..111
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 195..215
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 80..100
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 216..241
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 38..54
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..37
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 134..155
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 130..133
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 112..129
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..29
score: 6.0
NoneNo IPR availableTMHMMTMhelixcoord: 115..137
NoneNo IPR availableTMHMMTMhelixcoord: 142..164
NoneNo IPR availableTMHMMTMhelixcoord: 78..100
NoneNo IPR availableTMHMMTMhelixcoord: 7..27
NoneNo IPR availableTMHMMTMhelixcoord: 189..211
NoneNo IPR availableTMHMMTMhelixcoord: 37..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:298274..298999 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6483.t1Ggra6483.t1Gracilaria gracilis GNS1m malemRNAtig00000074_pilon 298274..298999 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6483.t1 ID=Ggra6483.t1|Name=Ggra6483.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=242bp
MDPKSRLRPAPLIICAALASAASYLVLGCKAVQLEHVAFVILTSSYAIIA
NLYIRRTYYSLPLAPLSSCSLAPMRNSVRLLFPFTFVFSLSVPTLLLITA
GKSPIDGTQTQLYPILAPHLYLMICQILVETVGFIFSTIFTLYVRFGITV
AFVVYRLPVALEWYRQAEKYARSEDAALLPPAALPLTQAAAILNIVYWLF
ALLCFLLLYCLPAIVRNPQEVITSAKTEQTIIETVATEQCR*
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