Ggra6483.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6483.t1
Unique NameGgra6483.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length242
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:298274..298999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6483Ggra6483Gracilaria gracilis GNS1m malegenetig00000074_pilon 298274..298999 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6483.t1.start1Ggra6483.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 298274..298276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6483.t1.CDS1Ggra6483.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 298274..298999 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6483.t1.exon1Ggra6483.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 298274..298999 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6483.t1.stop1Ggra6483.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 298997..298999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6483.t1Ggra6483.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 298274..298999 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6483.t1 ID=Ggra6483.t1|Name=Ggra6483.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=242bp
MDPKSRLRPAPLIICAALASAASYLVLGCKAVQLEHVAFVILTSSYAIIA
NLYIRRTYYSLPLAPLSSCSLAPMRNSVRLLFPFTFVFSLSVPTLLLITA
GKSPIDGTQTQLYPILAPHLYLMICQILVETVGFIFSTIFTLYVRFGITV
AFVVYRLPVALEWYRQAEKYARSEDAALLPPAALPLTQAAAILNIVYWLF
ALLCFLLLYCLPAIVRNPQEVITSAKTEQTIIETVATEQCR*
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spliced messenger RNA

>Ggra6483.t1 ID=Ggra6483.t1|Name=Ggra6483.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000074_pilon:298274..298999+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCCCAAGTCTAGACTGCGTCCAGCACCTCTGATAATCTGTGCTGC
GTTGGCGTCTGCGGCCTCATATCTCGTCCTAGGCTGCAAAGCAGTACAAC
TCGAGCACGTTGCATTCGTCATTCTGACCTCGTCGTACGCAATTATCGCC
AATTTGTACATCCGGCGCACGTATTATTCCTTGCCACTCGCCCCGCTTAG
CTCCTGTTCGCTCGCCCCGATGCGTAACTCAGTCCGATTACTGTTTCCGT
TCACTTTTGTCTTCTCATTAAGCGTACCAACATTACTTCTTATCACGGCA
GGAAAGTCTCCCATCGATGGCACGCAGACGCAACTATATCCGATTCTTGC
CCCGCATTTATACCTCATGATCTGTCAAATCCTAGTCGAGACTGTGGGGT
TCATCTTTTCTACTATATTCACGCTCTACGTGCGCTTCGGCATCACGGTT
GCGTTTGTCGTGTACCGTTTACCTGTCGCTCTCGAATGGTACCGCCAGGC
TGAAAAGTACGCTCGTTCGGAGGACGCAGCACTGCTCCCGCCTGCAGCAC
TTCCACTGACACAAGCAGCGGCAATTCTCAACATCGTATACTGGTTGTTT
GCTTTGCTTTGCTTCCTGCTGCTATACTGCCTCCCAGCGATTGTCAGAAA
CCCCCAGGAAGTGATTACAAGCGCAAAGACCGAGCAGACAATCATTGAAA
CCGTAGCAACAGAACAGTGTAGGTAA
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protein sequence of Ggra6483.t1

>Ggra6483.t1 ID=Ggra6483.t1|Name=Ggra6483.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=242bp
MDPKSRLRPAPLIICAALASAASYLVLGCKAVQLEHVAFVILTSSYAIIA
NLYIRRTYYSLPLAPLSSCSLAPMRNSVRLLFPFTFVFSLSVPTLLLITA
GKSPIDGTQTQLYPILAPHLYLMICQILVETVGFIFSTIFTLYVRFGITV
AFVVYRLPVALEWYRQAEKYARSEDAALLPPAALPLTQAAAILNIVYWLF
ALLCFLLLYCLPAIVRNPQEVITSAKTEQTIIETVATEQCR*
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mRNA from alignment at tig00000074_pilon:298274..298999+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6483.t1 ID=Ggra6483.t1|Name=Ggra6483.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000074_pilon:298274..298999+ (Gracilaria gracilis GNS1m male)
ATGGATCCCAAGTCTAGACTGCGTCCAGCACCTCTGATAATCTGTGCTGC
GTTGGCGTCTGCGGCCTCATATCTCGTCCTAGGCTGCAAAGCAGTACAAC
TCGAGCACGTTGCATTCGTCATTCTGACCTCGTCGTACGCAATTATCGCC
AATTTGTACATCCGGCGCACGTATTATTCCTTGCCACTCGCCCCGCTTAG
CTCCTGTTCGCTCGCCCCGATGCGTAACTCAGTCCGATTACTGTTTCCGT
TCACTTTTGTCTTCTCATTAAGCGTACCAACATTACTTCTTATCACGGCA
GGAAAGTCTCCCATCGATGGCACGCAGACGCAACTATATCCGATTCTTGC
CCCGCATTTATACCTCATGATCTGTCAAATCCTAGTCGAGACTGTGGGGT
TCATCTTTTCTACTATATTCACGCTCTACGTGCGCTTCGGCATCACGGTT
GCGTTTGTCGTGTACCGTTTACCTGTCGCTCTCGAATGGTACCGCCAGGC
TGAAAAGTACGCTCGTTCGGAGGACGCAGCACTGCTCCCGCCTGCAGCAC
TTCCACTGACACAAGCAGCGGCAATTCTCAACATCGTATACTGGTTGTTT
GCTTTGCTTTGCTTCCTGCTGCTATACTGCCTCCCAGCGATTGTCAGAAA
CCCCCAGGAAGTGATTACAAGCGCAAAGACCGAGCAGACAATCATTGAAA
CCGTAGCAACAGAACAGTGTAGGTAA
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Coding sequence (CDS) from alignment at tig00000074_pilon:298274..298999+

>Ggra6483.t1 ID=Ggra6483.t1|Name=Ggra6483.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=726bp|location=Sequence derived from alignment at tig00000074_pilon:298274..298999+ (Gracilaria gracilis GNS1m male)
ATGGATCCCAAGTCTAGACTGCGTCCAGCACCTCTGATAATCTGTGCTGC
GTTGGCGTCTGCGGCCTCATATCTCGTCCTAGGCTGCAAAGCAGTACAAC
TCGAGCACGTTGCATTCGTCATTCTGACCTCGTCGTACGCAATTATCGCC
AATTTGTACATCCGGCGCACGTATTATTCCTTGCCACTCGCCCCGCTTAG
CTCCTGTTCGCTCGCCCCGATGCGTAACTCAGTCCGATTACTGTTTCCGT
TCACTTTTGTCTTCTCATTAAGCGTACCAACATTACTTCTTATCACGGCA
GGAAAGTCTCCCATCGATGGCACGCAGACGCAACTATATCCGATTCTTGC
CCCGCATTTATACCTCATGATCTGTCAAATCCTAGTCGAGACTGTGGGGT
TCATCTTTTCTACTATATTCACGCTCTACGTGCGCTTCGGCATCACGGTT
GCGTTTGTCGTGTACCGTTTACCTGTCGCTCTCGAATGGTACCGCCAGGC
TGAAAAGTACGCTCGTTCGGAGGACGCAGCACTGCTCCCGCCTGCAGCAC
TTCCACTGACACAAGCAGCGGCAATTCTCAACATCGTATACTGGTTGTTT
GCTTTGCTTTGCTTCCTGCTGCTATACTGCCTCCCAGCGATTGTCAGAAA
CCCCCAGGAAGTGATTACAAGCGCAAAGACCGAGCAGACAATCATTGAAA
CCGTAGCAACAGAACAGTGTAGGTAA
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