Ggra6384.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6384.t1
Unique NameGgra6384.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length575
Homology
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BLAST of Ggra6384.t1 vs. uniprot
Match: A0A2V3IF86 (Myb-like domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IF86_9FLOR)

HSP 1 Score: 59.3 bits (142), Expect = 3.880e-6
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 0 
Query:  482 VRTRSGGYTDEETDLLHKGIRKYGNGNWKPIAQNLFYPRGIYRVPSSLKDRARSLGYPSSHKK 544
            ++ R G ++ +ET LL +GI ++G G WK I +   +P  I R  +SLKD+ARSLGY S  K+
Sbjct:  155 IKWRIGRFSVKETALLIEGIEEHGVGRWKLIQETKCFPNNISRTQTSLKDKARSLGYTSDRKR 217
The following BLAST results are available for this feature:
BLAST of Ggra6384.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IF863.880e-644.44Myb-like domain-containing protein n=1 Tax=Gracila... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 485..539
e-value: 3.1E-5
score: 33.4
coord: 11..72
e-value: 46.0
score: 2.8
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 485..537
score: 6.39984
NoneNo IPR availableGENE3D1.10.10.60coord: 482..541
e-value: 3.0E-9
score: 38.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 555..574
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 534..574
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..128
NoneNo IPR availableCDDcd11660SANT_TRFcoord: 489..536
e-value: 1.77129E-9
score: 51.7991
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 484..543

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000861_piloncontigtig00000861_pilon:17543..19267 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6384.t1Ggra6384.t1Gracilaria gracilis GNS1m malemRNAtig00000861_pilon 17543..19267 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6384.t1 ID=Ggra6384.t1|Name=Ggra6384.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=575bp
MTPSSEQQTCMEISWSCKDDDAILDIVREEQQNGKKRYQNMSFWEQLKEH
ELTPMGKTGKQCYERSLSLLQQNSTAKQKDLSEEPLFTAALEPLFTASLG
GTGRSGHDNNTSLKLTRSKNHDKDTSETVPTAPDGNGNSCLVDIMENSTE
DLDGVFDQCTSPIGNESKLDPCVLDRGLDYASCVHSLFSLSSIFRIGDVL
HTKEALNQIHTSVSQRFGSSRGKELLYYISVNGFRMKLIDIIEDIRSVFK
RRSFQVDEVNKIASKSTEFFIIQGVEGEDAKRCRSTVCLTLFEVMKQTAS
CEMSSKMKHMYSEYRSRYLEWKCLPVFDEPHMGSLLMDGFEGFKKFVKEK
YNDTTLTCSASQLKTYITELSNFSDIYHGKCNSFVSRVLDHQSESIIEPK
TPLAALTARDVLRDPPFFSDNEDVLPVTAKTYPSLSDQEKDGTNLFTCGT
DGTHSIKNSAPNHATPKTRKREETILVGTRFVRTRSGGYTDEETDLLHKG
IRKYGNGNWKPIAQNLFYPRGIYRVPSSLKDRARSLGYPSSHKKRKLTLS
KIPGAAKKNRTTQRSPCSQSDGEY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like_sf