Ggra6384.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6384.t1
Unique Name	Ggra6384.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	575

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000861_pilon	contig	tig00000861_pilon:17543..19267 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6384	Ggra6384	Gracilaria gracilis GNS1m male	gene	tig00000861_pilon 17543..19267 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6384.t1.start1	Ggra6384.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000861_pilon 17543..17545 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6384.t1.CDS1	Ggra6384.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000861_pilon 17543..19267 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6384.t1.exon1	Ggra6384.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000861_pilon 17543..19267 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6384.t1.stop1	Ggra6384.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000861_pilon 19265..19267 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6384.t1	Ggra6384.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000861_pilon 17543..19267 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000861_pilon:17543..19267+
coding sequence from alignment at tig00000861_pilon:17543..19267+

mRNA sequence

>Ggra6384.t1 ID=Ggra6384.t1|Name=Ggra6384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=575bp
MTPSSEQQTCMEISWSCKDDDAILDIVREEQQNGKKRYQNMSFWEQLKEH
ELTPMGKTGKQCYERSLSLLQQNSTAKQKDLSEEPLFTAALEPLFTASLG
GTGRSGHDNNTSLKLTRSKNHDKDTSETVPTAPDGNGNSCLVDIMENSTE
DLDGVFDQCTSPIGNESKLDPCVLDRGLDYASCVHSLFSLSSIFRIGDVL
HTKEALNQIHTSVSQRFGSSRGKELLYYISVNGFRMKLIDIIEDIRSVFK
RRSFQVDEVNKIASKSTEFFIIQGVEGEDAKRCRSTVCLTLFEVMKQTAS
CEMSSKMKHMYSEYRSRYLEWKCLPVFDEPHMGSLLMDGFEGFKKFVKEK
YNDTTLTCSASQLKTYITELSNFSDIYHGKCNSFVSRVLDHQSESIIEPK
TPLAALTARDVLRDPPFFSDNEDVLPVTAKTYPSLSDQEKDGTNLFTCGT
DGTHSIKNSAPNHATPKTRKREETILVGTRFVRTRSGGYTDEETDLLHKG
IRKYGNGNWKPIAQNLFYPRGIYRVPSSLKDRARSLGYPSSHKKRKLTLS
KIPGAAKKNRTTQRSPCSQSDGEY*

spliced messenger RNA

>Ggra6384.t1 ID=Ggra6384.t1|Name=Ggra6384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1725bp|location=Sequence derived from alignment at tig00000861_pilon:17543..19267+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCCCAGTTCTGAGCAGCAGACCTGTATGGAAATATCTTGGAGCTG
CAAGGATGATGATGCGATTTTGGATATAGTTCGGGAAGAGCAGCAAAATG
GAAAGAAACGATACCAGAACATGTCCTTTTGGGAACAATTGAAGGAACAT
GAACTCACTCCCATGGGGAAGACAGGGAAGCAATGCTACGAAAGGTCGCT
CTCGCTGCTGCAGCAAAACTCCACCGCGAAACAGAAAGATTTGTCCGAGG
AGCCTTTGTTCACAGCGGCACTGGAGCCTTTGTTCACAGCGTCACTGGGA
GGAACAGGGAGGAGTGGGCACGACAACAATACATCTCTGAAATTAACCAG
AAGTAAGAATCATGACAAAGATACAAGTGAAACAGTTCCAACCGCTCCGG
ATGGAAATGGTAATTCCTGTCTTGTAGATATCATGGAGAACTCTACGGAG
GACCTCGATGGAGTTTTTGATCAGTGCACATCACCCATTGGAAATGAATC
AAAGCTCGATCCTTGCGTTTTGGACCGTGGTTTGGACTATGCAAGCTGTG
TTCATTCATTGTTTTCACTTTCCAGTATCTTTAGGATCGGGGACGTTCTC
CATACCAAGGAGGCATTGAATCAAATACACACGTCAGTTTCTCAACGATT
TGGTTCCTCCAGGGGAAAGGAGCTTTTGTATTACATTTCTGTTAATGGTT
TCCGAATGAAGCTTATTGATATAATCGAGGATATTCGATCTGTATTTAAG
AGACGTTCTTTTCAAGTGGATGAGGTGAATAAGATAGCTAGCAAAAGTAC
CGAGTTCTTCATCATCCAAGGAGTGGAAGGCGAAGATGCAAAACGATGCA
GAAGTACTGTGTGTCTCACGTTATTTGAAGTCATGAAGCAAACGGCGAGT
TGTGAAATGTCTTCGAAAATGAAGCACATGTACTCGGAATATCGTTCTAG
ATACCTCGAATGGAAATGCCTACCTGTTTTTGATGAACCACATATGGGAT
CTTTGCTCATGGATGGATTTGAGGGATTTAAGAAATTCGTCAAAGAAAAG
TACAACGATACCACACTGACATGTTCTGCTTCGCAACTTAAGACGTATAT
AACCGAACTGAGTAACTTCTCTGATATTTACCATGGAAAATGCAATTCAT
TTGTGTCAAGAGTTCTTGACCACCAATCCGAATCAATCATTGAGCCAAAA
ACACCTCTAGCAGCGCTTACCGCAAGAGATGTATTGAGGGATCCACCATT
CTTCTCTGACAATGAAGACGTTCTCCCGGTGACAGCGAAAACATATCCAT
CCCTTTCCGACCAGGAAAAGGATGGAACAAACCTTTTCACTTGTGGTACT
GATGGGACACATAGTATCAAGAACAGTGCTCCCAACCATGCAACACCTAA
GACTAGAAAACGTGAAGAGACTATCTTGGTTGGTACACGGTTTGTACGGA
CGCGCTCGGGTGGTTATACCGACGAGGAAACCGATCTACTTCATAAAGGA
ATTCGGAAATATGGCAACGGAAACTGGAAGCCGATAGCTCAAAATTTGTT
TTATCCGAGGGGTATCTACCGGGTCCCTTCAAGCCTCAAGGACAGAGCCC
GATCCCTAGGATATCCCAGCTCACATAAGAAACGGAAGCTTACTTTGTCG
AAGATCCCGGGAGCAGCAAAGAAAAATAGAACTACGCAAAGAAGCCCCTG
TTCTCAGTCCGACGGCGAATACTAG

protein sequence of Ggra6384.t1

>Ggra6384.t1 ID=Ggra6384.t1|Name=Ggra6384.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=575bp
MTPSSEQQTCMEISWSCKDDDAILDIVREEQQNGKKRYQNMSFWEQLKEH
ELTPMGKTGKQCYERSLSLLQQNSTAKQKDLSEEPLFTAALEPLFTASLG
GTGRSGHDNNTSLKLTRSKNHDKDTSETVPTAPDGNGNSCLVDIMENSTE
DLDGVFDQCTSPIGNESKLDPCVLDRGLDYASCVHSLFSLSSIFRIGDVL
HTKEALNQIHTSVSQRFGSSRGKELLYYISVNGFRMKLIDIIEDIRSVFK
RRSFQVDEVNKIASKSTEFFIIQGVEGEDAKRCRSTVCLTLFEVMKQTAS
CEMSSKMKHMYSEYRSRYLEWKCLPVFDEPHMGSLLMDGFEGFKKFVKEK
YNDTTLTCSASQLKTYITELSNFSDIYHGKCNSFVSRVLDHQSESIIEPK
TPLAALTARDVLRDPPFFSDNEDVLPVTAKTYPSLSDQEKDGTNLFTCGT
DGTHSIKNSAPNHATPKTRKREETILVGTRFVRTRSGGYTDEETDLLHKG
IRKYGNGNWKPIAQNLFYPRGIYRVPSSLKDRARSLGYPSSHKKRKLTLS
KIPGAAKKNRTTQRSPCSQSDGEY*

mRNA from alignment at tig00000861_pilon:17543..19267+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6384.t1 ID=Ggra6384.t1|Name=Ggra6384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1725bp|location=Sequence derived from alignment at tig00000861_pilon:17543..19267+ (Gracilaria gracilis GNS1m male)
ATGACTCCCAGTTCTGAGCAGCAGACCTGTATGGAAATATCTTGGAGCTG
CAAGGATGATGATGCGATTTTGGATATAGTTCGGGAAGAGCAGCAAAATG
GAAAGAAACGATACCAGAACATGTCCTTTTGGGAACAATTGAAGGAACAT
GAACTCACTCCCATGGGGAAGACAGGGAAGCAATGCTACGAAAGGTCGCT
CTCGCTGCTGCAGCAAAACTCCACCGCGAAACAGAAAGATTTGTCCGAGG
AGCCTTTGTTCACAGCGGCACTGGAGCCTTTGTTCACAGCGTCACTGGGA
GGAACAGGGAGGAGTGGGCACGACAACAATACATCTCTGAAATTAACCAG
AAGTAAGAATCATGACAAAGATACAAGTGAAACAGTTCCAACCGCTCCGG
ATGGAAATGGTAATTCCTGTCTTGTAGATATCATGGAGAACTCTACGGAG
GACCTCGATGGAGTTTTTGATCAGTGCACATCACCCATTGGAAATGAATC
AAAGCTCGATCCTTGCGTTTTGGACCGTGGTTTGGACTATGCAAGCTGTG
TTCATTCATTGTTTTCACTTTCCAGTATCTTTAGGATCGGGGACGTTCTC
CATACCAAGGAGGCATTGAATCAAATACACACGTCAGTTTCTCAACGATT
TGGTTCCTCCAGGGGAAAGGAGCTTTTGTATTACATTTCTGTTAATGGTT
TCCGAATGAAGCTTATTGATATAATCGAGGATATTCGATCTGTATTTAAG
AGACGTTCTTTTCAAGTGGATGAGGTGAATAAGATAGCTAGCAAAAGTAC
CGAGTTCTTCATCATCCAAGGAGTGGAAGGCGAAGATGCAAAACGATGCA
GAAGTACTGTGTGTCTCACGTTATTTGAAGTCATGAAGCAAACGGCGAGT
TGTGAAATGTCTTCGAAAATGAAGCACATGTACTCGGAATATCGTTCTAG
ATACCTCGAATGGAAATGCCTACCTGTTTTTGATGAACCACATATGGGAT
CTTTGCTCATGGATGGATTTGAGGGATTTAAGAAATTCGTCAAAGAAAAG
TACAACGATACCACACTGACATGTTCTGCTTCGCAACTTAAGACGTATAT
AACCGAACTGAGTAACTTCTCTGATATTTACCATGGAAAATGCAATTCAT
TTGTGTCAAGAGTTCTTGACCACCAATCCGAATCAATCATTGAGCCAAAA
ACACCTCTAGCAGCGCTTACCGCAAGAGATGTATTGAGGGATCCACCATT
CTTCTCTGACAATGAAGACGTTCTCCCGGTGACAGCGAAAACATATCCAT
CCCTTTCCGACCAGGAAAAGGATGGAACAAACCTTTTCACTTGTGGTACT
GATGGGACACATAGTATCAAGAACAGTGCTCCCAACCATGCAACACCTAA
GACTAGAAAACGTGAAGAGACTATCTTGGTTGGTACACGGTTTGTACGGA
CGCGCTCGGGTGGTTATACCGACGAGGAAACCGATCTACTTCATAAAGGA
ATTCGGAAATATGGCAACGGAAACTGGAAGCCGATAGCTCAAAATTTGTT
TTATCCGAGGGGTATCTACCGGGTCCCTTCAAGCCTCAAGGACAGAGCCC
GATCCCTAGGATATCCCAGCTCACATAAGAAACGGAAGCTTACTTTGTCG
AAGATCCCGGGAGCAGCAAAGAAAAATAGAACTACGCAAAGAAGCCCCTG
TTCTCAGTCCGACGGCGAATACTAG

Coding sequence (CDS) from alignment at tig00000861_pilon:17543..19267+

>Ggra6384.t1 ID=Ggra6384.t1|Name=Ggra6384.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1725bp|location=Sequence derived from alignment at tig00000861_pilon:17543..19267+ (Gracilaria gracilis GNS1m male)
ATGACTCCCAGTTCTGAGCAGCAGACCTGTATGGAAATATCTTGGAGCTG
CAAGGATGATGATGCGATTTTGGATATAGTTCGGGAAGAGCAGCAAAATG
GAAAGAAACGATACCAGAACATGTCCTTTTGGGAACAATTGAAGGAACAT
GAACTCACTCCCATGGGGAAGACAGGGAAGCAATGCTACGAAAGGTCGCT
CTCGCTGCTGCAGCAAAACTCCACCGCGAAACAGAAAGATTTGTCCGAGG
AGCCTTTGTTCACAGCGGCACTGGAGCCTTTGTTCACAGCGTCACTGGGA
GGAACAGGGAGGAGTGGGCACGACAACAATACATCTCTGAAATTAACCAG
AAGTAAGAATCATGACAAAGATACAAGTGAAACAGTTCCAACCGCTCCGG
ATGGAAATGGTAATTCCTGTCTTGTAGATATCATGGAGAACTCTACGGAG
GACCTCGATGGAGTTTTTGATCAGTGCACATCACCCATTGGAAATGAATC
AAAGCTCGATCCTTGCGTTTTGGACCGTGGTTTGGACTATGCAAGCTGTG
TTCATTCATTGTTTTCACTTTCCAGTATCTTTAGGATCGGGGACGTTCTC
CATACCAAGGAGGCATTGAATCAAATACACACGTCAGTTTCTCAACGATT
TGGTTCCTCCAGGGGAAAGGAGCTTTTGTATTACATTTCTGTTAATGGTT
TCCGAATGAAGCTTATTGATATAATCGAGGATATTCGATCTGTATTTAAG
AGACGTTCTTTTCAAGTGGATGAGGTGAATAAGATAGCTAGCAAAAGTAC
CGAGTTCTTCATCATCCAAGGAGTGGAAGGCGAAGATGCAAAACGATGCA
GAAGTACTGTGTGTCTCACGTTATTTGAAGTCATGAAGCAAACGGCGAGT
TGTGAAATGTCTTCGAAAATGAAGCACATGTACTCGGAATATCGTTCTAG
ATACCTCGAATGGAAATGCCTACCTGTTTTTGATGAACCACATATGGGAT
CTTTGCTCATGGATGGATTTGAGGGATTTAAGAAATTCGTCAAAGAAAAG
TACAACGATACCACACTGACATGTTCTGCTTCGCAACTTAAGACGTATAT
AACCGAACTGAGTAACTTCTCTGATATTTACCATGGAAAATGCAATTCAT
TTGTGTCAAGAGTTCTTGACCACCAATCCGAATCAATCATTGAGCCAAAA
ACACCTCTAGCAGCGCTTACCGCAAGAGATGTATTGAGGGATCCACCATT
CTTCTCTGACAATGAAGACGTTCTCCCGGTGACAGCGAAAACATATCCAT
CCCTTTCCGACCAGGAAAAGGATGGAACAAACCTTTTCACTTGTGGTACT
GATGGGACACATAGTATCAAGAACAGTGCTCCCAACCATGCAACACCTAA
GACTAGAAAACGTGAAGAGACTATCTTGGTTGGTACACGGTTTGTACGGA
CGCGCTCGGGTGGTTATACCGACGAGGAAACCGATCTACTTCATAAAGGA
ATTCGGAAATATGGCAACGGAAACTGGAAGCCGATAGCTCAAAATTTGTT
TTATCCGAGGGGTATCTACCGGGTCCCTTCAAGCCTCAAGGACAGAGCCC
GATCCCTAGGATATCCCAGCTCACATAAGAAACGGAAGCTTACTTTGTCG
AAGATCCCGGGAGCAGCAAAGAAAAATAGAACTACGCAAAGAAGCCCCTG
TTCTCAGTCCGACGGCGAATACTAG