Ggra638.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra638.t1
Unique NameGgra638.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length504
Homology
BLAST of Ggra638.t1 vs. uniprot
Match: A0A2V3IUT9 (Small subunit processome component 20-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUT9_9FLOR)

HSP 1 Score: 494 bits (1272), Expect = 2.250e-153
Identity = 264/451 (58.54%), Postives = 332/451 (73.61%), Query Frame = 0
Query:    1 LSYELADGRLVALNAIHAVLNKFPGDVLKRESEYLIVALASMVSLDTDADCRSNASQCLQLLFEKVPYGRKVFDLLKMAVTLSGMVLSSETGSRVIETDGTLDPVIQRSGAVSLTAACMSGRLSADQLSLVVRTAAAVLPGLSGENQWEAIHSFLLCLEEAFAKSSLKGRKSLEVQPYVFPVWKVLPLFLLSNHQWVRLSAARLLRRHLSSAGGRTLAIKDMPVSSLIWYSNDLVRELLRSSCLQLEANILCPALAKETLENLLSMAVVLQSNPRIGDLRLHSV-NRSRNPQDSSSDVENDLQEGRALNWLIARISGIASKGKLESSDMLRRGCALSFRLVSTKRWDRDKICRHARQYINPVVKILESGEIQFLAPDSSETKEPVPHKPEECGPDGNDTNSDGITGVGLRMLAQTLQESLTEVLGTSEYFEVYNQLRSLRAEIKQTRKRNA 450
            LSY+L +GRL ALNAI+ V+NKFP  VL++E EYL VALASMVS D D+ CRS ASQCL+LLFEK+P GRKV DLL+MAV LSG+ LS      V      +DPVIQRSGA S+TAACMSG LS +Q+++VVR AA +LPGLS    WE  H+FL+C+EEAF +S+L   K +E+Q +V P+WK LP FLLS HQWVRLSAARLLRRHLSSAGGR + I+D      +W S+DLVRE+LRS  LQLEANIL P LA++ L N++ MA VL+ NP++GDLR     + +     S  + ++D  EGRAL WLIAR+SGIA KG+ ESSD+LRRGCAL F +V++K WD   I RH RQYIN VVK+LESG+I+  + + ++   P  +  ++  P  +     G+TG GL++LAQTLQESLTEVLGT+EY++VYNQLRS R E+KQ RKR A
Sbjct: 2380 LSYKLPEGRLGALNAINMVVNKFPVPVLEKECEYLFVALASMVSRDADSQCRSEASQCLRLLFEKLPAGRKVADLLRMAVALSGLKLSDGPSLEVHIKVEDVDPVIQRSGASSMTAACMSGNLSDEQITIVVRAAATLLPGLSNVPGWETAHAFLVCVEEAFERSALTANKQMELQKFVLPLWKSLPSFLLSKHQWVRLSAARLLRRHLSSAGGRHVDIQDPMSPYTVWSSDDLVREILRSCSLQLEANILSPELARQVLNNIMCMADVLKRNPQVGDLRTRDAESETLQTHVSPCEEDSDRTEGRALTWLIARMSGIAMKGRFESSDVLRRGCALRFLIVTSKWWDPPVIKRHERQYINAVVKVLESGDIRAASGEVADVSIPSSNPIKKTDPVESTAEESGLTGQGLQLLAQTLQESLTEVLGTAEYYKVYNQLRSKREEVKQERKRKA 2830          
BLAST of Ggra638.t1 vs. uniprot
Match: R7QKY0 (DRIM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKY0_CHOCR)

HSP 1 Score: 305 bits (781), Expect = 8.680e-88
Identity = 185/474 (39.03%), Postives = 265/474 (55.91%), Query Frame = 0
Query:    1 LSYELADGRLVALNAIHAVLNKFPGDVLKRESEYLIVALASMVSLDTDADCRSNASQCLQLLFEKVPYGRKVFDLLKMAVTLSGMVLSSETGSRVIETDGTLDPVIQRSGAVSLTAACMSGRLSADQLSLVVRTAAAVLPGLSGENQWEAIHSFLLCLEEAF-AKSSLKGRKSLEVQPYVFPVWKVLPLFLLSNHQWVRLSAARLLRRHLSSAGGRTLAIKDMPVS--SLIWYSNDLVRELLRSSCLQLEANILCPALAKETLENLLSMAVVLQSNPRIGDLRLHSVNRSRNPQDSSSDVENDLQEG-----------RALNWLIARISGIASKGKLESSDMLRRGCALSFRLVSTKRWDRDKICRHARQYINPVVKILESGEIQFLAPDSSETKEPVPHKPEECGPDGNDTNSDGITGVGLRMLAQTLQESLTEVLGTSEYFEVYNQLRSLRAEIKQTRKRNAALLAAVDPER 460
            L+YEL  GRL AL  I  ++ KFP D L  ES+YL VALA+  + D+D DCRS AS+ LQLLFEK   GR ++ LL+M+  L+G+          IE   T++  +Q SGAV+L+ AC S R+++ QL+++VR    VL    GE +WE ++  L  LE AF  + +    + LEVQ +   +W  LPL L+  H WVRLS+ARLL  HLS  G    A +  P    SL+W S+  VR +L   C QLEA+ +  +L  + L+N+L +A VL  NP IGDL       +R P+    D++ + Q               L+WL+ R+SG+A++   E++D LRRGCA+ F  V  K W  D +  + + +I P+VK+LE      ++   +   E +    E  G DG            L+ +A TLQE+L EVLG   Y+ +Y  LR+ R E+K+ RKR AA   A++PER
Sbjct: 2389 LNYELPTGRLAALQVIRTLILKFPSDALTDESQYLFVALAASAARDSDGDCRSCASEALQLLFEKASSGRGIYSLLQMSTALAGVKSDMIAIDDHIEVITTIEDDVQLSGAVALSRACKSRRMTSSQLNMIVRVVTVVLTDRLGEGKWETVYGLLDALESAFDVQETAVQSERLEVQQHTLKLWDSLPLLLIHKHPWVRLSSARLLGSHLSVHGDNKRAAEKRPAVPFSLLWESSTNVRNILNCCCAQLEASSISESLVHQCLKNILCIANVLFHNPAIGDL-------AREPRAGKRDIQQENQNAVIVPTSLKTRNPGLHWLVCRVSGLATRPGTEAADSLRRGCAMRFLHVIAKWWGVDFVLPNQKLFIAPIVKVLEHKAPTTVSQVGNRGYESLVASQENIGMDG------------LKEIAGTLQEALVEVLGGGAYYSMYKLLRNERNEVKEARKRQAAFELAINPER 2843          
BLAST of Ggra638.t1 vs. uniprot
Match: A0A1Y1HR11 (Down-regulated in metastasis family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HR11_KLENI)

HSP 1 Score: 72.4 bits (176), Expect = 1.430e-9
Identity = 117/504 (23.21%), Postives = 189/504 (37.50%), Query Frame = 0
Query:    1 LSYELADGRLVALNAIHAVLNKFPGDVLKRESEYLIVALASMVSLDTDADCRSNASQCLQLLFEKVP--------------YGRKVFDLLKMAVTLSGMVLSSETGSRVIETDGTLDPVIQRSGAVSLTAACMSGRLSADQLSLVVRTAAAVLPGLSGEN------QWEAIHSFLLCLEEAFAKSSLKGRKSLEVQPYVFPVWKVLPLFLLSNHQWVRLSAARLLRRHLSSAGGRTLAIKDMPVSSLIWYSNDLV------RELLRSSCLQLEANILCPALAKETLENLL----SMAVVLQSNPRIGDLRLHSVNRSRNPQDSSSD-VENDLQEGRALNWLIARISGIASKGKLESSDMLRRGCALSFRLVSTKRWDRDK------ICRHARQYINPVVKILESGEIQFLAPDSSETKEPV--PHKPEECGP-----DGNDTNSDGITGVGLRMLAQTLQESLTEVLGTSEYFEVYNQLRSLRAEIKQTRKRNAALLAAVDPER 460
            L+YE   GR  AL  IHAVL KFP +++    ++  + L + +  D    CR+     L++L  +V               YG +  +L + A  + G  +              L P  +R  A    AA     L   Q +L     AA   G   ++       W+  +  L   E+ F K        L  Q   F  W+ +   LL  H WVR +A RL+       GG   A+         W    ++      + +  S C QLEA ++   LA++ ++NL+    +M  VL++  + G      VN +    +S      N L +G A                  S +                RW RD+      + R   +    V  I  +  +++ A  ++        PH PE   P     +GN   +       L+ LA+ +   + + +G S++   YN +R      ++ RKR AA+ A VDPER
Sbjct: 2653 LAYEHPSGREAALEMIHAVLVKFPPEIVDENGDFFFLPLVTRLVNDDKQQCRAMVGAVLKVLMGRVGSAARQRMIDFAMAWYGGERRELWRPAAQVLGFGVE------------VLGPAFKRHVAAWRAAAL--AMLDRCQNALEGSPEAAAEEGSPSDDGQPAAPMWQEAYFTLTSAEKLFQKLP---ELVLSAQFQAF--WEHVSAHLLHRHLWVRKAAGRLV-------GGLFAALPQPTREPPGWAGETILSPPEGLQRVAASLCQQLEAEVVDEKLAEQGVKNLVYVATAMHAVLEAGVKPG------VNGANGRLESEGKHAGNGLGDGLAXXXXXXXXXXXXXXXXXXSEE---------------GRWQRDRCPTLKSLFRRIARIALRVEPIQSAAALRWFAAVATALGGAAVRPHLPELVVPLYRLAEGNAAKT---VPDDLKALAEEVMGLVRDSVGVSDFVSAYNAVRQDVKVSREDRKRKAAIAALVDPER 3106          
BLAST of Ggra638.t1 vs. uniprot
Match: I0YZQ7 (ARM repeat-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZQ7_COCSC)

HSP 1 Score: 65.9 bits (159), Expect = 1.570e-7
Identity = 115/496 (23.19%), Postives = 186/496 (37.50%), Query Frame = 0
Query:    1 LSYELADGRLVALNAIHAVLNKFPGDVL---KRESEYLIVALASMVSLDTDADCRSNASQCLQLLFEKVPYGRKVFDLLKMAVTLSGMVLSSETGSRVIETDGTLDPVIQRSGAVSL-TAACMSGRLSADQLSLVVRTAAAVLPGLSGENQ--------------WEAIHSFLLCLEEAFAKSSLKGRKSLEVQPYVFPVWKVLPLFLLSNHQWVRLSAARLLRRHL--SSAGGRTLAIKDMPVSSLIWYSNDLVRELLRSSCLQLEANILCPALAKETLENLLSMAVVLQSN-------PRIG-DLRLHSVNRSRNPQDSSSDVEN---------DLQEGRALNWLIARISGIASKGKLESSDMLRRGCALSFRLVSTKRWDRDKICRHARQYINPVVKILESGEIQFLAPDSSETKEPVPHKPEECGPDGNDTNSDGITGVGLRMLAQTLQESLTEVLGTSEYFEVYNQLRSLRAEIKQTRKRNAALLAAVDPE 459
            L +E   GR  A++A+ AV+ KFP +VL    R S + +  +A +VS D    CR+   + L+ L  +                 +  V      S   +     DP + RSGA +L   A   G     ++ +++    + L   S E                W+  ++ LL LE+    S  + + S   +  V  +W  LP  L   H WVR +A+RLL      S+ G   LA ++     L +              +QLEA     AL  +  +NL+ +A  L +        P  G  + L SV  S  P   ++ + N         D+ +   L          A++G+  S+  L        RL   + W R      A ++   +   L    +             VP+ P    P    T S+      ++ LA+ +   L  V G       YN+ R   ++++  R+R  AL A VDPE
Sbjct: 2445 LEFEHESGREAAIDAMIAVIQKFPEEVLVKKDRASAFFLPLVARLVS-DPSPKCRALVGRALKALLSR-----------------ANPVQLDRFASMCQKWLEGADPRLGRSGAQTLGIMAETEGARFGHRVPILLPQLLSTLQAHSQEESGAVLCTEAENIAQGWQVCYACLLLLEKIVGSSPAQVQWSAGRRE-VRQIWLQLPPLLTHRHLWVRKAASRLLGLAFAESTIGEGLLAEEEAAPGRLAFLL-----------FIQLEAEAADDALLSQATKNLVFLAPRLLATDTAAGRVPAAGKSINLSSVANS-GPAADTAKIGNGAAGGPGGADVADDADLXXXXXXXXXXAAEGEGRSALTLHGLVRRMARLADDRAWPRQAARLAALRFAAALGSRLGKESV-------------VPYLPSVLLPLYRITESNAANSDEVKALAEEVLAHLRTVAGPEALLAAYNRARQHVSDLRSERRRQKALQALVDPE 2896          
BLAST of Ggra638.t1 vs. uniprot
Match: A0A830DJE6 (Small subunit processome component 20 homolog n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830DJE6_9LAMI)

HSP 1 Score: 61.2 bits (147), Expect = 4.250e-6
Identity = 114/483 (23.60%), Postives = 199/483 (41.20%), Query Frame = 0
Query:    1 LSYELADGRLVALNAIHAVLNKFPGDVLKRESEYLIVALASMVSLDTDADCRSNASQCLQLLFEKVPYGRKVFDLLKMAVT--LSGMVLSSETGSRVIETDGTLDPVIQRSGAVSLTAAC------MSGRLSADQLSLVVRTAAAVLPGLSGENQWEAIHSFLLCLEEAFAKSSLKGRKSLEVQPYVFPVWKVLPLFLLSNHQWVRLSAARLLRRHLSSAGGRTLAIKD--MPVSSLIWYSNDLVRELLRSSCLQLEANILCPALAKETLENLLSMAVVLQS---NPRIGDLRLHSVNRSRNPQDS--SSDVENDLQEGR-ALNWLIARISGIASKGKLESSDMLRRGCALSFRLVSTKRWDRDKICRHARQYINPVVKILES-GEIQFLAPDSSETKEPVPHKP--EECGPDGNDTNSDGITGV----GLRMLAQTLQESLTEVLGTSEYFEVYNQLRSLRAEIKQTRKRNAALLAAVDPER 460
            L YE + GR   L  +HA++ KFP +V+  +S+ L + L   ++ D D+  RS A+  ++ L   V        +L+ +V+  L G        ++V+   G L  VI +S    L              +SA   S    +  AV+P       W+  +  L+ LE+      L   ++L     +  +W+ +  FLL  H W+R  + R+L R+ ++A   T A ++  + + +L      ++     S C QL+  +   A     L+NL+     L S        D+     N  R  QD    + +  D  +GR  L  L    + ++S    E    L      +   +S    +  KI  +  + I+P  K+L   GEI  +  +   +       P    C         +G TG      L+ LAQ + ES+  ++G   + +VY+Q+R      +  RK+   ++A V+P R
Sbjct: 2298 LRYEHSTGREAVLEMLHAIILKFPRNVVDGQSQTLFLHLVISLANDDDSKVRSMAAAAIKCLIGHVS-SYSHHSVLEYSVSWYLGGKQNLWGAAAQVL---GLLVEVIGKSFEKHLNKVLPVMRRVFQSAVSAVTSSQENASEEAVVPF------WKEAYYSLVLLEKI-----LNQFQNLFFDSDLEDIWETICEFLLHPHLWIRNISNRILSRYFAAA---TDAYRENKLSIETLFLMKPSILFHTAVSLCCQLKVPLTDDAAGPIILQNLVFSICGLNSYLEKDECMDVSKFWANLDRAEQDRFLKAFLVVDPSKGRRTLTSLTCDANTLSSACLFEVRTFLSVESPTAPGSLSLVLREIMKIVFNCFKLISP--KLLRCYGEISPIGNNDQHSYAYPMLLPLYRVC---------EGYTGTVVSDDLKQLAQEVSESIRGIIGVQNFVQVYSQIRKNLKLKRDKRKQGEKIMAVVNPVR 2751          
BLAST of Ggra638.t1 vs. uniprot
Match: small subunit processome component 20 homolog n=1 Tax=Sesamum indicum TaxID=4182 RepID=UPI0009D71D9C (small subunit processome component 20 homolog n=1 Tax=Sesamum indicum TaxID=4182 RepID=UPI0009D71D9C)

HSP 1 Score: 60.8 bits (146), Expect = 5.570e-6
Identity = 108/496 (21.77%), Postives = 201/496 (40.52%), Query Frame = 0
Query:    1 LSYELADGRLVALNAIHAVLNKFPGDVLKRESEYLIVALASMVSLDTDADCRSNASQCLQLLFEKVPYGRKVFDLLKMAVT--LSGMVLSSETGSRVIETDGTLDPVIQRSGAVSLTAACMSGRLSADQLSLVVRTAAAVLPGLSGENQWEAIHSFLLCLEEAFAKSSLKGRKSLEVQPYVFP-----VWKVLPLFLLSNHQWVRLSAARLLRRHLSSAGGRTLAIKDMPVSSLIWYSNDLVRELLRSSCLQLEANILCPALAKETLENLLSMAVVLQSNPRIGDLRLHSVNRSRNPQDSSSDVENDLQEGRALNWLIARISGIASKGKLESSDMLRRGCALSFRLVSTKRWDRDKICRHARQYINPVVKIL--ESGEIQFLAPDSS-----ETKEPVPHKPEEC----GPDGNDTNS--------------DGITGV----GLRMLAQTLQESLTEVLGTSEYFEVYNQLRSLRAEIKQTRKRNAALLAAVDPER 460
            L YE   GR   L  +HA++ KFP +++  +S+ + V L   ++ D D+  RS  +  ++ L   V     +  +L+ +++  L G   +    S   +  G L  V+++S   +L             L  ++++A + +  +   +  EA+  F    +EA+    L  +   +     F      +W+ +  FLL  H W+R  + R+L  + ++    T A +D  VS   ++       L++ S L L A  LC  L  + +++  +  V++  N       LHS+       D      N L+ G    +L A  +    KGK+  +                  +  D   +H  Q+ +P +  L    G+I F   D+         + +  K   C     P G+D                 +G TG      L+ LAQ + ES+ +++G   + +VY+Q+R      +  RK+   ++A V+P R
Sbjct: 2187 LRYEHPTGREATLEMLHAIILKFPRNIIDAQSQTMFVHLVVSLANDDDSKVRSMTAAAIKCLIGHVN-SHSLHSILEYSLSWYLGG---NQNLWSAAAQVLGLLVEVMRKSFEKNLDRVL-------PVLRNILQSALSAVTSIQQNSSDEAVAPFW---KEAYYSLVLLEKLLCQFHILFFDRELEDIWETICEFLLHPHLWLRNISNRILSVYFAAV---TTACRDKKVSMGTFF-------LMKPSILFLAAVSLCCQLKVQLIDD--AAGVIIMQNLVFSICGLHSLLVEVEFMDVPKFWSN-LERGEQERFLKAFGALDPRKGKMILAS-----------------FTSDASGQH-NQHQHPFISYLLQRMGKITFQMDDNQIKIVFNCFKSISPKLLGCYGISSPIGDDDLHNYAYLLLLPLYRVVEGYTGKVVSDDLKQLAQEVSESIRDIIGMQNFVQVYSQIRKNLKGKRDKRKQQEKIMAVVNPTR 2637          
The following BLAST results are available for this feature:
BLAST of Ggra638.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IUT92.250e-15358.54Small subunit processome component 20-like n=1 Tax... [more]
R7QKY08.680e-8839.03DRIM domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A1Y1HR111.430e-923.21Down-regulated in metastasis family protein n=1 Ta... [more]
I0YZQ71.570e-723.19ARM repeat-containing protein n=1 Tax=Coccomyxa su... [more]
A0A830DJE64.250e-623.60Small subunit processome component 20 homolog n=1 ... [more]
small subunit processome component 20 homolog n=1 Tax=Sesamum indicum TaxID=4182 RepID=UPI0009D71D9C5.570e-621.77small subunit processome component 20 homolog n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 459..479
NoneNo IPR availableCOILSCoilCoilcoord: 435..455
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 375..403
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 380..394
NoneNo IPR availablePANTHERPTHR17695UNCHARACTERIZEDcoord: 1..479
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 9..367

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000243_piloncontigtig00000243_pilon:39745..41256 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra638.t1Ggra638.t1Gracilaria gracilis GNS1m malemRNAtig00000243_pilon 39745..41256 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra638.t1 ID=Ggra638.t1|Name=Ggra638.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=504bp
LSYELADGRLVALNAIHAVLNKFPGDVLKRESEYLIVALASMVSLDTDAD
CRSNASQCLQLLFEKVPYGRKVFDLLKMAVTLSGMVLSSETGSRVIETDG
TLDPVIQRSGAVSLTAACMSGRLSADQLSLVVRTAAAVLPGLSGENQWEA
IHSFLLCLEEAFAKSSLKGRKSLEVQPYVFPVWKVLPLFLLSNHQWVRLS
AARLLRRHLSSAGGRTLAIKDMPVSSLIWYSNDLVRELLRSSCLQLEANI
LCPALAKETLENLLSMAVVLQSNPRIGDLRLHSVNRSRNPQDSSSDVEND
LQEGRALNWLIARISGIASKGKLESSDMLRRGCALSFRLVSTKRWDRDKI
CRHARQYINPVVKILESGEIQFLAPDSSETKEPVPHKPEECGPDGNDTNS
DGITGVGLRMLAQTLQESLTEVLGTSEYFEVYNQLRSLRAEIKQTRKRNA
ALLAAVDPERAAKKRRKKAESRRRQKKKRNVTLIQSKTSDSVAAQKRLLT
DDL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold