Ggra638.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra638.t1
Unique NameGgra638.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length504
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000243_piloncontigtig00000243_pilon:39745..41256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5286.M7WKQ9
Preferred nameUTP20
PFAMsDRIM
Max annot lvl4751|Fungi
KEGG koko:K14772
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0030688,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Evalue3.9e-18
EggNOG OGsKOG1823@1|root,KOG1823@2759|Eukaryota,38G3S@33154|Opisthokonta,3NUBZ@4751|Fungi,3UZ36@5204|Basidiomycota,2YD92@29000|Pucciniomycotina
DescriptionDown-regulated in metastasis
COG categoryV
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra638Ggra638Gracilaria gracilis GNS1m malegenetig00000243_pilon 39745..41256 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra638.t1.start1Ggra638.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000243_pilon 39745..39747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra638.t1.CDS1Ggra638.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000243_pilon 39745..41256 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra638.t1.exon1Ggra638.t1.exon1Gracilaria gracilis GNS1m maleexontig00000243_pilon 39745..41256 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra638.t1.stop1Ggra638.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000243_pilon 41254..41256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra638.t1Ggra638.t1Gracilaria gracilis GNS1m malepolypeptidetig00000243_pilon 39745..41256 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra638.t1 ID=Ggra638.t1|Name=Ggra638.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=504bp
LSYELADGRLVALNAIHAVLNKFPGDVLKRESEYLIVALASMVSLDTDAD
CRSNASQCLQLLFEKVPYGRKVFDLLKMAVTLSGMVLSSETGSRVIETDG
TLDPVIQRSGAVSLTAACMSGRLSADQLSLVVRTAAAVLPGLSGENQWEA
IHSFLLCLEEAFAKSSLKGRKSLEVQPYVFPVWKVLPLFLLSNHQWVRLS
AARLLRRHLSSAGGRTLAIKDMPVSSLIWYSNDLVRELLRSSCLQLEANI
LCPALAKETLENLLSMAVVLQSNPRIGDLRLHSVNRSRNPQDSSSDVEND
LQEGRALNWLIARISGIASKGKLESSDMLRRGCALSFRLVSTKRWDRDKI
CRHARQYINPVVKILESGEIQFLAPDSSETKEPVPHKPEECGPDGNDTNS
DGITGVGLRMLAQTLQESLTEVLGTSEYFEVYNQLRSLRAEIKQTRKRNA
ALLAAVDPERAAKKRRKKAESRRRQKKKRNVTLIQSKTSDSVAAQKRLLT
DDL*
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spliced messenger RNA

>Ggra638.t1 ID=Ggra638.t1|Name=Ggra638.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00000243_pilon:39745..41256+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGAGTTATGAGCTCGCAGATGGACGGCTTGTGGCGTTGAATGCGATACA
TGCCGTATTGAACAAGTTCCCCGGGGACGTCTTGAAGCGAGAAAGTGAAT
ACCTTATTGTGGCGTTGGCGTCCATGGTATCACTTGATACTGATGCCGAC
TGCCGCTCAAATGCAAGCCAATGTCTGCAGCTTCTTTTCGAAAAGGTTCC
GTACGGGCGAAAAGTATTTGATCTTCTAAAGATGGCGGTTACTTTATCGG
GAATGGTTCTGTCTAGTGAAACCGGCTCCCGTGTTATAGAAACAGACGGC
ACTCTTGACCCTGTTATTCAGAGATCAGGCGCCGTTAGCTTAACTGCTGC
GTGCATGAGTGGCCGTCTTAGTGCTGATCAGCTGAGTCTAGTCGTTCGCA
CTGCAGCCGCTGTACTACCCGGTTTGTCAGGTGAAAACCAGTGGGAAGCT
ATACATTCGTTCTTGTTGTGTTTGGAGGAAGCATTTGCGAAGTCCTCCTT
GAAGGGAAGGAAAAGTCTAGAAGTGCAACCATATGTGTTTCCGGTGTGGA
AAGTGCTGCCATTGTTTCTTTTGTCTAATCATCAATGGGTTCGTCTATCT
GCTGCCAGACTCCTAAGACGACACCTGTCTTCAGCCGGTGGGAGAACATT
GGCTATCAAAGACATGCCAGTGTCCTCATTGATATGGTACTCGAATGATC
TGGTCCGCGAGCTTCTTAGATCGAGTTGTTTACAATTGGAAGCCAATATC
CTTTGCCCTGCACTTGCAAAGGAAACGCTTGAGAACTTGCTCTCTATGGC
TGTAGTGCTTCAAAGCAATCCAAGGATTGGAGATTTAAGACTTCATTCAG
TGAATCGCAGCAGGAATCCTCAAGATAGTTCTTCAGATGTTGAGAATGAT
CTCCAAGAAGGTCGAGCTCTTAACTGGCTTATCGCAAGAATTTCAGGAAT
TGCATCGAAGGGTAAGCTGGAAAGCTCAGATATGCTTCGTAGGGGATGCG
CCCTGAGCTTTCGTCTTGTGTCTACTAAGCGGTGGGATCGTGACAAAATT
TGCCGACACGCACGACAGTATATCAATCCAGTAGTGAAGATCTTGGAATC
CGGAGAAATTCAATTTCTAGCACCCGATAGTTCTGAAACAAAGGAACCCG
TCCCGCACAAGCCTGAGGAATGTGGTCCAGACGGTAACGATACAAACAGT
GATGGAATCACGGGAGTGGGGTTGCGTATGCTGGCACAAACATTGCAAGA
ATCATTAACAGAGGTTCTAGGAACTAGCGAGTACTTTGAGGTCTACAATC
AACTCAGGAGCTTGCGAGCAGAGATCAAACAAACCCGGAAGAGAAATGCA
GCTTTATTGGCCGCAGTTGATCCGGAGCGTGCTGCTAAGAAACGTCGTAA
GAAGGCTGAGAGTCGACGTCGGCAGAAGAAGAAGAGGAATGTGACCTTGA
TACAATCAAAAACATCTGATTCAGTCGCTGCACAGAAACGATTGCTAACG
GACGATCTATGA
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protein sequence of Ggra638.t1

>Ggra638.t1 ID=Ggra638.t1|Name=Ggra638.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=504bp
LSYELADGRLVALNAIHAVLNKFPGDVLKRESEYLIVALASMVSLDTDAD
CRSNASQCLQLLFEKVPYGRKVFDLLKMAVTLSGMVLSSETGSRVIETDG
TLDPVIQRSGAVSLTAACMSGRLSADQLSLVVRTAAAVLPGLSGENQWEA
IHSFLLCLEEAFAKSSLKGRKSLEVQPYVFPVWKVLPLFLLSNHQWVRLS
AARLLRRHLSSAGGRTLAIKDMPVSSLIWYSNDLVRELLRSSCLQLEANI
LCPALAKETLENLLSMAVVLQSNPRIGDLRLHSVNRSRNPQDSSSDVEND
LQEGRALNWLIARISGIASKGKLESSDMLRRGCALSFRLVSTKRWDRDKI
CRHARQYINPVVKILESGEIQFLAPDSSETKEPVPHKPEECGPDGNDTNS
DGITGVGLRMLAQTLQESLTEVLGTSEYFEVYNQLRSLRAEIKQTRKRNA
ALLAAVDPERAAKKRRKKAESRRRQKKKRNVTLIQSKTSDSVAAQKRLLT
DDL*
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mRNA from alignment at tig00000243_pilon:39745..41256+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra638.t1 ID=Ggra638.t1|Name=Ggra638.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00000243_pilon:39745..41256+ (Gracilaria gracilis GNS1m male)
TTGAGTTATGAGCTCGCAGATGGACGGCTTGTGGCGTTGAATGCGATACA
TGCCGTATTGAACAAGTTCCCCGGGGACGTCTTGAAGCGAGAAAGTGAAT
ACCTTATTGTGGCGTTGGCGTCCATGGTATCACTTGATACTGATGCCGAC
TGCCGCTCAAATGCAAGCCAATGTCTGCAGCTTCTTTTCGAAAAGGTTCC
GTACGGGCGAAAAGTATTTGATCTTCTAAAGATGGCGGTTACTTTATCGG
GAATGGTTCTGTCTAGTGAAACCGGCTCCCGTGTTATAGAAACAGACGGC
ACTCTTGACCCTGTTATTCAGAGATCAGGCGCCGTTAGCTTAACTGCTGC
GTGCATGAGTGGCCGTCTTAGTGCTGATCAGCTGAGTCTAGTCGTTCGCA
CTGCAGCCGCTGTACTACCCGGTTTGTCAGGTGAAAACCAGTGGGAAGCT
ATACATTCGTTCTTGTTGTGTTTGGAGGAAGCATTTGCGAAGTCCTCCTT
GAAGGGAAGGAAAAGTCTAGAAGTGCAACCATATGTGTTTCCGGTGTGGA
AAGTGCTGCCATTGTTTCTTTTGTCTAATCATCAATGGGTTCGTCTATCT
GCTGCCAGACTCCTAAGACGACACCTGTCTTCAGCCGGTGGGAGAACATT
GGCTATCAAAGACATGCCAGTGTCCTCATTGATATGGTACTCGAATGATC
TGGTCCGCGAGCTTCTTAGATCGAGTTGTTTACAATTGGAAGCCAATATC
CTTTGCCCTGCACTTGCAAAGGAAACGCTTGAGAACTTGCTCTCTATGGC
TGTAGTGCTTCAAAGCAATCCAAGGATTGGAGATTTAAGACTTCATTCAG
TGAATCGCAGCAGGAATCCTCAAGATAGTTCTTCAGATGTTGAGAATGAT
CTCCAAGAAGGTCGAGCTCTTAACTGGCTTATCGCAAGAATTTCAGGAAT
TGCATCGAAGGGTAAGCTGGAAAGCTCAGATATGCTTCGTAGGGGATGCG
CCCTGAGCTTTCGTCTTGTGTCTACTAAGCGGTGGGATCGTGACAAAATT
TGCCGACACGCACGACAGTATATCAATCCAGTAGTGAAGATCTTGGAATC
CGGAGAAATTCAATTTCTAGCACCCGATAGTTCTGAAACAAAGGAACCCG
TCCCGCACAAGCCTGAGGAATGTGGTCCAGACGGTAACGATACAAACAGT
GATGGAATCACGGGAGTGGGGTTGCGTATGCTGGCACAAACATTGCAAGA
ATCATTAACAGAGGTTCTAGGAACTAGCGAGTACTTTGAGGTCTACAATC
AACTCAGGAGCTTGCGAGCAGAGATCAAACAAACCCGGAAGAGAAATGCA
GCTTTATTGGCCGCAGTTGATCCGGAGCGTGCTGCTAAGAAACGTCGTAA
GAAGGCTGAGAGTCGACGTCGGCAGAAGAAGAAGAGGAATGTGACCTTGA
TACAATCAAAAACATCTGATTCAGTCGCTGCACAGAAACGATTGCTAACG
GACGATCTATGA
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Coding sequence (CDS) from alignment at tig00000243_pilon:39745..41256+

>Ggra638.t1 ID=Ggra638.t1|Name=Ggra638.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1512bp|location=Sequence derived from alignment at tig00000243_pilon:39745..41256+ (Gracilaria gracilis GNS1m male)
TTGAGTTATGAGCTCGCAGATGGACGGCTTGTGGCGTTGAATGCGATACA
TGCCGTATTGAACAAGTTCCCCGGGGACGTCTTGAAGCGAGAAAGTGAAT
ACCTTATTGTGGCGTTGGCGTCCATGGTATCACTTGATACTGATGCCGAC
TGCCGCTCAAATGCAAGCCAATGTCTGCAGCTTCTTTTCGAAAAGGTTCC
GTACGGGCGAAAAGTATTTGATCTTCTAAAGATGGCGGTTACTTTATCGG
GAATGGTTCTGTCTAGTGAAACCGGCTCCCGTGTTATAGAAACAGACGGC
ACTCTTGACCCTGTTATTCAGAGATCAGGCGCCGTTAGCTTAACTGCTGC
GTGCATGAGTGGCCGTCTTAGTGCTGATCAGCTGAGTCTAGTCGTTCGCA
CTGCAGCCGCTGTACTACCCGGTTTGTCAGGTGAAAACCAGTGGGAAGCT
ATACATTCGTTCTTGTTGTGTTTGGAGGAAGCATTTGCGAAGTCCTCCTT
GAAGGGAAGGAAAAGTCTAGAAGTGCAACCATATGTGTTTCCGGTGTGGA
AAGTGCTGCCATTGTTTCTTTTGTCTAATCATCAATGGGTTCGTCTATCT
GCTGCCAGACTCCTAAGACGACACCTGTCTTCAGCCGGTGGGAGAACATT
GGCTATCAAAGACATGCCAGTGTCCTCATTGATATGGTACTCGAATGATC
TGGTCCGCGAGCTTCTTAGATCGAGTTGTTTACAATTGGAAGCCAATATC
CTTTGCCCTGCACTTGCAAAGGAAACGCTTGAGAACTTGCTCTCTATGGC
TGTAGTGCTTCAAAGCAATCCAAGGATTGGAGATTTAAGACTTCATTCAG
TGAATCGCAGCAGGAATCCTCAAGATAGTTCTTCAGATGTTGAGAATGAT
CTCCAAGAAGGTCGAGCTCTTAACTGGCTTATCGCAAGAATTTCAGGAAT
TGCATCGAAGGGTAAGCTGGAAAGCTCAGATATGCTTCGTAGGGGATGCG
CCCTGAGCTTTCGTCTTGTGTCTACTAAGCGGTGGGATCGTGACAAAATT
TGCCGACACGCACGACAGTATATCAATCCAGTAGTGAAGATCTTGGAATC
CGGAGAAATTCAATTTCTAGCACCCGATAGTTCTGAAACAAAGGAACCCG
TCCCGCACAAGCCTGAGGAATGTGGTCCAGACGGTAACGATACAAACAGT
GATGGAATCACGGGAGTGGGGTTGCGTATGCTGGCACAAACATTGCAAGA
ATCATTAACAGAGGTTCTAGGAACTAGCGAGTACTTTGAGGTCTACAATC
AACTCAGGAGCTTGCGAGCAGAGATCAAACAAACCCGGAAGAGAAATGCA
GCTTTATTGGCCGCAGTTGATCCGGAGCGTGCTGCTAAGAAACGTCGTAA
GAAGGCTGAGAGTCGACGTCGGCAGAAGAAGAAGAGGAATGTGACCTTGA
TACAATCAAAAACATCTGATTCAGTCGCTGCACAGAAACGATTGCTAACG
GACGATCTATGA
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