Ggra6329.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6329.t1
Unique NameGgra6329.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length308
Homology
BLAST of Ggra6329.t1 vs. uniprot
Match: A0A2V3J3X5 (Pullulanase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3X5_9FLOR)

HSP 1 Score: 253 bits (645), Expect = 1.730e-72
Identity = 118/141 (83.69%), Postives = 129/141 (91.49%), Query Frame = 0
Query:  167 HDTFRNAIRGSPFDTEETFVMDGGRLTDVKGGIIGSVDMFVDSPLESINYDECHDNRTLWDHLNLYIRSRTDTIKFSEEDIRRMHKLAAVVVLTSQGIPFIQAGQEMCRTKFDDENSYESLDEINMIRWSTKLKECSIVQY 307
            +DTFRNA+RGSPFDTEETF+MDGGRL +VKGGIIGSVD+F DSPLES+NY ECHDNRTLWDHL  Y RSRTD IKF+EED+RRMH+LAAV+VLTSQG+PFIQAGQEMCRTKFDDENSYES DEINMIRW TKL E S VQY
Sbjct: 1152 NDTFRNAVRGSPFDTEETFIMDGGRLPEVKGGIIGSVDLFTDSPLESLNYVECHDNRTLWDHLTYYTRSRTDNIKFNEEDLRRMHRLAAVLVLTSQGVPFIQAGQEMCRTKFDDENSYESSDEINMIRWMTKLNEWSTVQY 1292          
BLAST of Ggra6329.t1 vs. uniprot
Match: A0A2V3IDA9 (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDA9_9FLOR)

HSP 1 Score: 227 bits (578), Expect = 1.200e-67
Identity = 104/154 (67.53%), Postives = 128/154 (83.12%), Query Frame = 0
Query:    4 DESLLAPPSELPHVRDDLDADGADASFQPLVVAPPGLANLGNICYMNATIQCLNAIPPLVNSVAAYGGRTDAMNPAKKLTAGLRDVFSRLKASNAPSVNPLSFLAIFRKVNPQFAERNSRGLFMQQDAEECWGEILSHLASSLKLDGSDNRIDN 157
            DES LAPP+ELP VR+DLD D  D ++QP V  PPGL NLGN CYMN+TIQCLNA+ PLV S+  Y GR DAMNPA+KL AGLR+VF RLKA++  S+NP+ FLA+ R+VNPQFAERN+RG+FMQQDAEECWGEILS L+++LK +G +N++DN
Sbjct:   80 DESRLAPPAELPKVRNDLDVDADDENYQPPVAGPPGLLNLGNTCYMNSTIQCLNAVRPLVKSLTTYTGRPDAMNPAEKLAAGLREVFGRLKATDIASINPIRFLAVLRQVNPQFAERNNRGIFMQQDAEECWGEILSRLSTALKRNGEENQVDN 233          
BLAST of Ggra6329.t1 vs. uniprot
Match: R7Q3N6 (Pullulanase, Pul1 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3N6_CHOCR)

HSP 1 Score: 216 bits (550), Expect = 9.220e-60
Identity = 101/141 (71.63%), Postives = 116/141 (82.27%), Query Frame = 0
Query:  167 HDTFRNAIRGSPFDTEETFVMDGGRLTDVKGGIIGSVDMFVDSPLESINYDECHDNRTLWDHLNLYIRSRTDTIKFSEEDIRRMHKLAAVVVLTSQGIPFIQAGQEMCRTKFDDENSYESLDEINMIRWSTKLKECSIVQY 307
            ++TFR+AIRGSPF TEETFVMDG RLT++KGGIIGSVD F D P E++NY ECHDN TLWDH   YIRSRTD I F+E D+RRMH+LAA +V TSQGIPF+Q GQEMCRTKFD ENSYES D+INM+RW  K  E + VQY
Sbjct: 1192 NNTFRDAIRGSPFGTEETFVMDGSRLTEIKGGIIGSVDDFCDFPTETVNYVECHDNYTLWDHFRFYIRSRTDDIVFTENDMRRMHRLAAAIVFTSQGIPFMQLGQEMCRTKFDVENSYESPDKINMVRWEAKQSEWTTVQY 1332          
BLAST of Ggra6329.t1 vs. uniprot
Match: A0A5J4YVH4 (Pullulanase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YVH4_PORPP)

HSP 1 Score: 176 bits (445), Expect = 9.860e-46
Identity = 82/141 (58.16%), Postives = 108/141 (76.60%), Query Frame = 0
Query:  167 HDTFRNAIRGSPFDTEETFVMDGGRLTDVKGGIIGSVDMFVDSPLESINYDECHDNRTLWDHLNLYIRSRTDTIKFSEEDIRRMHKLAAVVVLTSQGIPFIQAGQEMCRTKFDDENSYESLDEINMIRWSTKLKECSIVQY 307
            +DTFR+A+RGS +  +ETF+MDGGR+ +VK GI+GS+D+F DSPLESINY ECHDNRTL+D    Y+ +R D I +++ D  RM +L A++VLTSQG+PFI AGQEM RTK   ENSY S D+INM+RW+ K +    V+Y
Sbjct: 1499 NDTFRDALRGSTWSVDETFLMDGGRIDEVKRGILGSIDVFADSPLESINYIECHDNRTLYDQFQHYVANRQDDITYTDADYERMARLGALIVLTSQGVPFIHAGQEMMRTKQGVENSYCSPDDINMVRWAWKRERLMCVRY 1639          
BLAST of Ggra6329.t1 vs. uniprot
Match: A0A7V5M1D9 (Aamy domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5M1D9_9BACT)

HSP 1 Score: 164 bits (415), Expect = 5.680e-42
Identity = 82/142 (57.75%), Postives = 103/142 (72.54%), Query Frame = 0
Query:  167 HDTFRNAIRGSPFDTEETFVMDGGRLTDVKGGIIGSVDMFVDSPLESINYDECHDNRTLWDHLNLYIRSRTDT-IKFSEEDIRRMHKLAAVVVLTSQGIPFIQAGQEMCRTKFDDENSYESLDEINMIRWSTKLKECSIVQY 307
            +DTFRNA+RGS    EE F++DGG +  VK GI+GS+D F  SPLE INY ECHDNRTLWDHL   IR R D  I ++  D+ R+ KLAAV++LTSQGIPF+ +GQEM R+KF  ENSY+S D+IN +RW  K+    +V Y
Sbjct:  485 NDTFRNALRGSNQGIEENFLLDGGCIEAVKQGILGSIDDFAASPLEVINYVECHDNRTLWDHLWYVIRERADANITYTAADVLRVCKLAAVILLTSQGIPFLHSGQEMARSKFGVENSYQSGDDINRLRWERKIDFYGLVVY 626          
BLAST of Ggra6329.t1 vs. uniprot
Match: M1VKA6 (Pullulanase n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VKA6_CYAM1)

HSP 1 Score: 164 bits (415), Expect = 9.750e-42
Identity = 82/142 (57.75%), Postives = 103/142 (72.54%), Query Frame = 0
Query:  167 HDTFRNAIRGSPFDTEETFVMDGGRLTDVKGGIIGSVDMFVDSPLESINYDECHDNRTLWDHLNLYIRSRTDT-IKFSEEDIRRMHKLAAVVVLTSQGIPFIQAGQEMCRTKFDDENSYESLDEINMIRWSTKLKECSIVQY 307
            +DTFRNA+RGS    EE F++DGG +  VK GI+GS+D F  SPLE INY ECHDNRTLWDHL   IR R D  I ++  D+ R+ KLAAV++LTSQGIPF+ +GQEM R+KF  ENSY+S D+IN +RW  K+    +V Y
Sbjct: 1469 NDTFRNALRGSNQGIEENFLLDGGCIEAVKQGILGSIDDFAASPLEVINYVECHDNRTLWDHLWYVIRERADANITYTAADVLRVCKLAAVILLTSQGIPFLHSGQEMARSKFGVENSYQSGDDINRLRWERKIDFYGLVVY 1610          
BLAST of Ggra6329.t1 vs. uniprot
Match: A0A7S3E8R2 (Pullulanase n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E8R2_9RHOD)

HSP 1 Score: 163 bits (413), Expect = 1.720e-41
Identity = 76/141 (53.90%), Postives = 100/141 (70.92%), Query Frame = 0
Query:  167 HDTFRNAIRGSPFDTEETFVMDGGRLTDVKGGIIGSVDMFVDSPLESINYDECHDNRTLWDHLNLYIRSRTDTIKFSEEDIRRMHKLAAVVVLTSQGIPFIQAGQEMCRTKFDDENSYESLDEINMIRWSTKLKECSIVQY 307
            +D+ R+A+RG  +  +ETF+MDGG    VK GI+GS++ F   P E+INY ECHDNRTLWD  + Y   RTD+I F++ D  RM KLAA+++ TSQG+PFIQ GQEMCRTK   ENSYES D +NM++W  K +    V+Y
Sbjct: 1083 NDSLRDALRGGNWGIQETFLMDGGEAEKVKRGIMGSIEDFASQPTETINYAECHDNRTLWDQFSHYRELRTDSIVFTDSDFIRMGKLAALIIFTSQGLPFIQIGQEMCRTKGGVENSYESPDSVNMVQWKWKQERRRCVEY 1223          
BLAST of Ggra6329.t1 vs. uniprot
Match: A0A7S0ZDY1 (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZDY1_9RHOD)

HSP 1 Score: 143 bits (360), Expect = 8.250e-39
Identity = 67/113 (59.29%), Postives = 83/113 (73.45%), Query Frame = 0
Query:  195 VKGGIIGSVDMFVDSPLESINYDECHDNRTLWDHLNLYIRSRTDTIKFSEEDIRRMHKLAAVVVLTSQGIPFIQAGQEMCRTKFDDENSYESLDEINMIRWSTKLKECSIVQY 307
            +K GI+GS+D F D PLE+INY ECHDNRTL+D    Y+  R D+I ++E D  RM +L A+VVLTSQG+PFIQ GQEM RTK   ENSY S D +NM+RW  KLK  S+V+Y
Sbjct:    3 IKRGILGSIDEFTDGPLETINYIECHDNRTLYDQFVEYVTHRNDSIVYTETDFERMSRLGALVVLTSQGVPFIQMGQEMLRTKGGVENSYSSPDSVNMVRWEWKLKRLSVVRY 115          
BLAST of Ggra6329.t1 vs. uniprot
Match: A0A1Y1RKU5 (Pullulanase n=1 Tax=Candidatus Cloacimonetes bacterium 4572_55 TaxID=1971726 RepID=A0A1Y1RKU5_9BACT)

HSP 1 Score: 152 bits (385), Expect = 7.230e-38
Identity = 73/144 (50.69%), Postives = 98/144 (68.06%), Query Frame = 0
Query:  167 HDTFRNAIRGSPFDT---EETFVMDGGRLTDVKGGIIGSVDMFVDSPLESINYDECHDNRTLWDHLNLYIRSRTDTIKFSEEDIRRMHKLAAVVVLTSQGIPFIQAGQEMCRTKFDDENSYESLDEINMIRWSTKLKECSIVQY 307
            +D FR+A++GSPFD     ETF++ G R++++K GI GS+  F   PLES+NY ECHDNRTLWD L+   + +TD       DI +M KL AV++ TSQG+PFIQ GQEM RTK D ENSY + D +N I W  K++   +V+Y
Sbjct:  593 NDNFRDALKGSPFDRFDISETFLIHGSRISEIKKGIEGSIHSFAQRPLESVNYMECHDNRTLWDQLHYLTQGQTD---IDARDIVQMVKLGAVIIFTSQGVPFIQMGQEMLRTKHDVENSYNAPDSVNQIEWERKIRYRDVVEY 733          
BLAST of Ggra6329.t1 vs. uniprot
Match: R7QGF5 (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QGF5_CHOCR)

HSP 1 Score: 143 bits (361), Expect = 2.680e-35
Identity = 78/156 (50.00%), Postives = 101/156 (64.74%), Query Frame = 0
Query:    4 DESLLAPPS--ELPHVRDDLDADGADASFQPLVVAPPGLANLGNICYMNATIQCLNAIPPLVNSVAAYGGRTDAMNPAKKLTAGLRDVFSRLKASNAPSVNPLSFLAIFRKVNPQFAERNSRGLFMQQDAEECWGEILSHLASSLKLDGSDNRIDN 157
            D SL  PP+  EL +VRDDLDAD A A   P  V PPGLANLGN CYMN+T+QCL A+ PLV ++  +       +P+ KL+A LRDV + L+A    +VNP  FL+  R+V+PQFAE    G ++QQDAEECW  IL+ LA+ L ++     I N
Sbjct:  148 DASLPPPPTKAELNNVRDDLDAD-AMALEPPPPVGPPGLANLGNTCYMNSTVQCLTAVTPLVAALRRFRAPATESDPSGKLSASLRDVVASLQARATQAVNPYVFLSSLRQVDPQFAETGQDGRYVQQDAEECWSTILTRLAAKLLVEPGRPEIGN 302          
The following BLAST results are available for this feature:
BLAST of Ggra6329.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3X51.730e-7283.69Pullulanase n=1 Tax=Gracilariopsis chorda TaxID=44... [more]
A0A2V3IDA91.200e-6767.53Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Grac... [more]
R7Q3N69.220e-6071.63Pullulanase, Pul1 n=1 Tax=Chondrus crispus TaxID=2... [more]
A0A5J4YVH49.860e-4658.16Pullulanase n=1 Tax=Porphyridium purpureum TaxID=3... [more]
A0A7V5M1D95.680e-4257.75Aamy domain-containing protein n=1 Tax=bacterium T... [more]
M1VKA69.750e-4257.75Pullulanase n=1 Tax=Cyanidioschyzon merolae (strai... [more]
A0A7S3E8R21.720e-4153.90Pullulanase n=4 Tax=Rhodosorus marinus TaxID=10192... [more]
A0A7S0ZDY18.250e-3959.29Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A1Y1RKU57.230e-3850.69Pullulanase n=1 Tax=Candidatus Cloacimonetes bacte... [more]
R7QGF52.680e-3550.00Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Chon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.20.20.80Glycosidasescoord: 190..305
e-value: 7.6E-33
score: 115.6
NoneNo IPR availableGENE3D3.90.70.10Cysteine proteinasescoord: 33..185
e-value: 7.4E-27
score: 96.1
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolasePFAMPF00443UCHcoord: 39..169
e-value: 2.3E-19
score: 70.0
IPR044635Ubiquitin carboxyl-terminal hydrolase 14-likePANTHERPTHR43982UBIQUITIN CARBOXYL-TERMINAL HYDROLASEcoord: 4..152
IPR018200Ubiquitin specific protease, conserved sitePROSITEPS00972USP_1coord: 39..54
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 38..307
score: 14.224799
IPR017853Glycoside hydrolase superfamilySUPERFAMILY51445(Trans)glycosidasescoord: 205..297
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 37..235

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:189372..190295 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6329.t1Ggra6329.t1Gracilaria gracilis GNS1m malemRNAtig00000096_pilon 189372..190295 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6329.t1 ID=Ggra6329.t1|Name=Ggra6329.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=308bp
MSVDESLLAPPSELPHVRDDLDADGADASFQPLVVAPPGLANLGNICYMN
ATIQCLNAIPPLVNSVAAYGGRTDAMNPAKKLTAGLRDVFSRLKASNAPS
VNPLSFLAIFRKVNPQFAERNSRGLFMQQDAEECWGEILSHLASSLKLDG
SDNRIDNTSPPRAAPRHDTFRNAIRGSPFDTEETFVMDGGRLTDVKGGII
GSVDMFVDSPLESINYDECHDNRTLWDHLNLYIRSRTDTIKFSEEDIRRM
HKLAAVVVLTSQGIPFIQAGQEMCRTKFDDENSYESLDEINMIRWSTKLK
ECSIVQY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001394Peptidase_C19_UCH
IPR044635UBP14-like
IPR018200USP_CS
IPR028889USP_dom
IPR017853Glycoside_hydrolase_SF
IPR038765Papain-like_cys_pep_sf