Ggra6325.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6325.t1
Unique NameGgra6325.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length146
Homology
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BLAST of Ggra6325.t1 vs. uniprot
Match: A0A2V3IWX2 (Poly(A)-specific ribonuclease PARN n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWX2_9FLOR)

HSP 1 Score: 142 bits (359), Expect = 5.240e-37
Identity = 69/141 (48.94%), Postives = 98/141 (69.50%), Query Frame = 0 
Query:    1 MQASTGMFLIENDFDFQKTFRNGVTWLREDQEKKFFELVQDDLRLRRARTCDLDKLNAEEGMLLKEWTENIEQWFEALKKQDNECEKEDAKSKIRSFLLPSTPWMRKIICDLVRTRHPRLAAQTVPTQDGNKMLNLSLIAN 141
            +QAST  FL  + FDFQK F+ G+TWLRED+EK F E VQ+D+R+RR     +D L+ E+GMLLKEW +NI++W   LK++ N   + D ++KIRSF+LP+   +R +I D VR  + R+AA  +P Q+G KM+ LSL  +
Sbjct:  121 LQASTVSFLTSHMFDFQKCFKVGITWLREDREKDFLEHVQNDMRVRRKNRWSMDNLSGEDGMLLKEWGQNIDKWLTELKEKGNLPLQSDTEAKIRSFVLPNDARLRSLIFDFVRLNYQRMAAHAIPAQNGKKMIRLSLFGS 261
The following BLAST results are available for this feature:
BLAST of Ggra6325.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IWX25.240e-3748.94Poly(A)-specific ribonuclease PARN n=1 Tax=Gracila... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 64..84
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 2..116
e-value: 9.5E-8
score: 31.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:116309..116746 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6325.t1Ggra6325.t1Gracilaria gracilis GNS1m malemRNAtig00000096_pilon 116309..116746 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6325.t1 ID=Ggra6325.t1|Name=Ggra6325.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=146bp
MQASTGMFLIENDFDFQKTFRNGVTWLREDQEKKFFELVQDDLRLRRART
CDLDKLNAEEGMLLKEWTENIEQWFEALKKQDNECEKEDAKSKIRSFLLP
STPWMRKIICDLVRTRHPRLAAQTVPTQDGNKMLNLSLIANLSVK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006941RNase_CAF1