Ggra6324.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6324.t1
Unique NameGgra6324.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length209
Homology
BLAST of Ggra6324.t1 vs. uniprot
Match: A0A2V3IX19 (SRP_SPB domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX19_9FLOR)

HSP 1 Score: 232 bits (591), Expect = 1.040e-74
Identity = 112/170 (65.88%), Postives = 141/170 (82.94%), Query Frame = 0
Query:   38 VKSAYDEARGATEEEKAQKVFELQRSCLRSKDMITPQVFHSLLQDMKAAAGLSRLREHLPWVQNNPALGEFKEQEKIISAMTPTERKDAFSIKISDKKRLARETDAAMESVEALVTQIIQMRRIQKWFWKREKDDLPLPANAAELERMMTVSGGIKQGKEHNQWPNAGVP 207
            +KSAY EA+ + EE++++K+F++Q   LR K+M+TP VF S LQ MK AAGLS ++EHLPWVQNNPALGEFK+QE II+AMTP+E+KDAFSI ISDKKR+ R  DA ME+VEALVTQI QMRRIQKW WKREK+ LP+P +A ELERM+  SGG+K  +EH+++PN GVP
Sbjct:    1 MKSAYGEAQTSAEEKRSKKMFQIQMGYLRGKEMMTPNVFLSALQKMKQAAGLSGVKEHLPWVQNNPALGEFKQQESIIAAMTPSEKKDAFSITISDKKRIMRAADAPMEAVEALVTQITQMRRIQKWMWKREKEGLPIPRSADELERMIVASGGVKGAREHHKYPNPGVP 170          
BLAST of Ggra6324.t1 vs. uniprot
Match: R7Q4P9 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4P9_CHOCR)

HSP 1 Score: 145 bits (365), Expect = 1.560e-37
Identity = 80/186 (43.01%), Postives = 115/186 (61.83%), Query Frame = 0
Query:   22 HRASRSTVISNGIVDNVKSAYDEARGATEEEKAQKVFELQRSCLRSKDMITPQVFHSLLQDMKAAAGLSRLREHLPWVQNNPALGEFKEQEKIISAMTPTERKDAFSIKISDKKRLARETDAAMESVEALVTQIIQMRRIQKWFWKREKDDLPLPANAAELERMMTVSG-GIKQGKEHNQWPNAGV 206
            +R  RS+V S G++DN++SAYD+A   +E ++  KVFE Q   L +   I    F  L+Q+MK A+GL  ++EHLPWV+NNPA GEFK+QE+++ A TP ER + F I IS  KR+AR+ +  +  VE LV Q+  M  IQKW  KR+     LP ++ E++ M+   G GI +     Q  N G+
Sbjct:  278 YRNIRSSVPSLGVMDNMRSAYDKALQGSESKRESKVFEAQMKLLTADKRIDANSFLDLVQEMKMASGLGGVKEHLPWVRNNPATGEFKKQEEMLRAFTPAERANVFGIGISGLKRVARQANTDLHQVEGLVGQVKSMISIQKWMKKRKDSGEKLPESSREMQDMLLRPGSGISRKAGKGQKLNPGI 463          
The following BLAST results are available for this feature:
BLAST of Ggra6324.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IX191.040e-7465.88SRP_SPB domain-containing protein n=1 Tax=Gracilar... [more]
R7Q4P91.560e-3743.01Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004125Signal recognition particle, SRP54 subunit, M-domainPFAMPF02978SRP_SPBcoord: 76..160
e-value: 3.3E-7
score: 30.9
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilyGENE3D1.10.260.30coord: 47..165
e-value: 2.0E-12
score: 49.4
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilySUPERFAMILY47446Signal peptide-binding domaincoord: 41..164

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:107998..108624 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6324.t1Ggra6324.t1Gracilaria gracilis GNS1m malemRNAtig00000096_pilon 107998..108624 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6324.t1 ID=Ggra6324.t1|Name=Ggra6324.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=209bp
MATLRSAVRIFRATYAGSRLDHRASRSTVISNGIVDNVKSAYDEARGATE
EEKAQKVFELQRSCLRSKDMITPQVFHSLLQDMKAAAGLSRLREHLPWVQ
NNPALGEFKEQEKIISAMTPTERKDAFSIKISDKKRLARETDAAMESVEA
LVTQIIQMRRIQKWFWKREKDDLPLPANAAELERMMTVSGGIKQGKEHNQ
WPNAGVPV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004125Signal_recog_particle_SRP54_M
IPR036891Signal_recog_part_SRP54_M_sf