Ggra6324.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6324.t1
Unique NameGgra6324.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length209
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:107998..108624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX35246
PFAMsSRP_SPB
Max annot lvl2759|Eukaryota
Evalue9.15e-13
EggNOG OGs2AVD2@1|root,2RZW3@2759|Eukaryota
DescriptionSignal peptide binding domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6324Ggra6324Gracilaria gracilis GNS1m malegenetig00000096_pilon 107998..108624 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6324.t1.stop1Ggra6324.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000096_pilon 107998..108000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6324.t1.CDS1Ggra6324.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000096_pilon 107998..108624 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6324.t1.exon1Ggra6324.t1.exon1Gracilaria gracilis GNS1m maleexontig00000096_pilon 107998..108624 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6324.t1.start1Ggra6324.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000096_pilon 108622..108624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6324.t1Ggra6324.t1Gracilaria gracilis GNS1m malepolypeptidetig00000096_pilon 107998..108624 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6324.t1 ID=Ggra6324.t1|Name=Ggra6324.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=209bp
MATLRSAVRIFRATYAGSRLDHRASRSTVISNGIVDNVKSAYDEARGATE
EEKAQKVFELQRSCLRSKDMITPQVFHSLLQDMKAAAGLSRLREHLPWVQ
NNPALGEFKEQEKIISAMTPTERKDAFSIKISDKKRLARETDAAMESVEA
LVTQIIQMRRIQKWFWKREKDDLPLPANAAELERMMTVSGGIKQGKEHNQ
WPNAGVPV*
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spliced messenger RNA

>Ggra6324.t1 ID=Ggra6324.t1|Name=Ggra6324.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=627bp|location=Sequence derived from alignment at tig00000096_pilon:107998..108624- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACATTAAGATCAGCGGTAAGAATTTTCCGAGCAACATATGCAGG
TTCGCGCTTGGATCACCGTGCATCTCGCTCAACAGTCATTAGTAATGGTA
TCGTAGATAATGTTAAATCTGCATATGATGAAGCCAGAGGCGCCACTGAA
GAGGAAAAAGCGCAGAAGGTTTTCGAATTACAACGTTCATGCCTTCGTTC
AAAGGATATGATAACACCACAAGTATTTCATTCGCTATTGCAGGATATGA
AAGCCGCGGCTGGATTGTCACGCCTAAGAGAGCATCTACCGTGGGTTCAA
AACAACCCTGCACTCGGTGAGTTTAAAGAGCAGGAAAAGATCATTTCGGC
AATGACTCCAACTGAAAGGAAAGATGCCTTCTCGATTAAGATTAGCGATA
AAAAACGTCTGGCGAGGGAGACTGATGCCGCTATGGAATCCGTGGAAGCA
CTGGTCACACAGATAATCCAGATGAGAAGAATTCAGAAGTGGTTTTGGAA
GAGGGAAAAGGATGATTTGCCACTTCCAGCGAACGCTGCCGAACTAGAGC
GAATGATGACTGTGTCAGGTGGGATTAAACAGGGAAAGGAACACAACCAA
TGGCCGAATGCGGGTGTGCCCGTGTAA
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protein sequence of Ggra6324.t1

>Ggra6324.t1 ID=Ggra6324.t1|Name=Ggra6324.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=209bp
MATLRSAVRIFRATYAGSRLDHRASRSTVISNGIVDNVKSAYDEARGATE
EEKAQKVFELQRSCLRSKDMITPQVFHSLLQDMKAAAGLSRLREHLPWVQ
NNPALGEFKEQEKIISAMTPTERKDAFSIKISDKKRLARETDAAMESVEA
LVTQIIQMRRIQKWFWKREKDDLPLPANAAELERMMTVSGGIKQGKEHNQ
WPNAGVPV*
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mRNA from alignment at tig00000096_pilon:107998..108624-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6324.t1 ID=Ggra6324.t1|Name=Ggra6324.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=627bp|location=Sequence derived from alignment at tig00000096_pilon:107998..108624- (Gracilaria gracilis GNS1m male)
ATGGCCACATTAAGATCAGCGGTAAGAATTTTCCGAGCAACATATGCAGG
TTCGCGCTTGGATCACCGTGCATCTCGCTCAACAGTCATTAGTAATGGTA
TCGTAGATAATGTTAAATCTGCATATGATGAAGCCAGAGGCGCCACTGAA
GAGGAAAAAGCGCAGAAGGTTTTCGAATTACAACGTTCATGCCTTCGTTC
AAAGGATATGATAACACCACAAGTATTTCATTCGCTATTGCAGGATATGA
AAGCCGCGGCTGGATTGTCACGCCTAAGAGAGCATCTACCGTGGGTTCAA
AACAACCCTGCACTCGGTGAGTTTAAAGAGCAGGAAAAGATCATTTCGGC
AATGACTCCAACTGAAAGGAAAGATGCCTTCTCGATTAAGATTAGCGATA
AAAAACGTCTGGCGAGGGAGACTGATGCCGCTATGGAATCCGTGGAAGCA
CTGGTCACACAGATAATCCAGATGAGAAGAATTCAGAAGTGGTTTTGGAA
GAGGGAAAAGGATGATTTGCCACTTCCAGCGAACGCTGCCGAACTAGAGC
GAATGATGACTGTGTCAGGTGGGATTAAACAGGGAAAGGAACACAACCAA
TGGCCGAATGCGGGTGTGCCCGTGTAA
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Coding sequence (CDS) from alignment at tig00000096_pilon:107998..108624-

>Ggra6324.t1 ID=Ggra6324.t1|Name=Ggra6324.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=627bp|location=Sequence derived from alignment at tig00000096_pilon:107998..108624- (Gracilaria gracilis GNS1m male)
ATGGCCACATTAAGATCAGCGGTAAGAATTTTCCGAGCAACATATGCAGG
TTCGCGCTTGGATCACCGTGCATCTCGCTCAACAGTCATTAGTAATGGTA
TCGTAGATAATGTTAAATCTGCATATGATGAAGCCAGAGGCGCCACTGAA
GAGGAAAAAGCGCAGAAGGTTTTCGAATTACAACGTTCATGCCTTCGTTC
AAAGGATATGATAACACCACAAGTATTTCATTCGCTATTGCAGGATATGA
AAGCCGCGGCTGGATTGTCACGCCTAAGAGAGCATCTACCGTGGGTTCAA
AACAACCCTGCACTCGGTGAGTTTAAAGAGCAGGAAAAGATCATTTCGGC
AATGACTCCAACTGAAAGGAAAGATGCCTTCTCGATTAAGATTAGCGATA
AAAAACGTCTGGCGAGGGAGACTGATGCCGCTATGGAATCCGTGGAAGCA
CTGGTCACACAGATAATCCAGATGAGAAGAATTCAGAAGTGGTTTTGGAA
GAGGGAAAAGGATGATTTGCCACTTCCAGCGAACGCTGCCGAACTAGAGC
GAATGATGACTGTGTCAGGTGGGATTAAACAGGGAAAGGAACACAACCAA
TGGCCGAATGCGGGTGTGCCCGTGTAA
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