Ggra6291.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6291.t1
Unique NameGgra6291.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length207
Homology
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BLAST of Ggra6291.t1 vs. uniprot
Match: A0A2V3IJN3 (G2/mitotic-specific cyclin-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJN3_9FLOR)

HSP 1 Score: 239 bits (611), Expect = 8.540e-77
Identity = 127/200 (63.50%), Postives = 157/200 (78.50%), Query Frame = 0 
Query:    1 MREQVVAWSREMAEFLQLPAATTAIATNLFDRFLQQRAVKKGVLYALTAACVLIACKQLVEVRIPLRLIARRASSTAADVAAMERVVLNALSWRVHVVTPHEVVLELCKLFPAASKRGALLDTLVLNCLMDEHMACMRATSVGVACFVLSCLFMSSSRAYGAHAAYRYAASCGVDMKQVDACIQRLEHSIDAMFDAVDDD 200
            MREQVVAWSREMA+FL++P AT AIA NLFDRF++   V K VLYALTAACVLIACKQ+V+  +P+ +IARRAS+  AD+A +E +VLNAL WRV+VVT +EV +EL K F   +KRG LLDTLVLNCLMD  MA +RATSVGVACF+++ LF++   ++  HA Y YA  CGVDM QVD C++RL+ SI  MFD V+DD
Sbjct:    1 MREQVVAWSREMADFLRVPIATVAIAINLFDRFVECHRVGKNVLYALTAACVLIACKQMVDFEVPVDVIARRASTNRADIALLEPLVLNALQWRVNVVTAYEVCVELGKKFAHVTKRGTLLDTLVLNCLMDVDMAWVRATSVGVACFIVTSLFLAKHSSHRQHAVYAYARWCGVDMAQVDYCVERLQASIACMFDGVEDD 200
The following BLAST results are available for this feature:
BLAST of Ggra6291.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IJN38.540e-7763.50G2/mitotic-specific cyclin-2 n=1 Tax=Gracilariopsi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013763Cyclin-likeSMARTSM00385cyclin_7coord: 7..89
e-value: 2.9E-6
score: 36.8
IPR013763Cyclin-likeCDDcd00043CYCLINcoord: 1..88
e-value: 4.12588E-8
score: 47.2333
IPR006671Cyclin, N-terminalPFAMPF00134Cyclin_Ncoord: 1..95
e-value: 5.0E-14
score: 52.1
NoneNo IPR availableGENE3D1.10.472.10coord: 1..90
e-value: 8.9E-18
score: 66.2
NoneNo IPR availableGENE3D1.10.472.10coord: 91..198
e-value: 2.7E-5
score: 26.1
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 42..60
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 31..41
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 61..206
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..30
IPR039361CyclinPANTHERPTHR10177CYCLINScoord: 1..157
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 1..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:434225..434845 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6291.t1Ggra6291.t1Gracilaria gracilis GNS1m malemRNAtig00000879_pilon 434225..434845 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6291.t1 ID=Ggra6291.t1|Name=Ggra6291.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=207bp
MREQVVAWSREMAEFLQLPAATTAIATNLFDRFLQQRAVKKGVLYALTAA
CVLIACKQLVEVRIPLRLIARRASSTAADVAAMERVVLNALSWRVHVVTP
HEVVLELCKLFPAASKRGALLDTLVLNCLMDEHMACMRATSVGVACFVLS
CLFMSSSRAYGAHAAYRYAASCGVDMKQVDACIQRLEHSIDAMFDAVDDD
HVPTPK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013763Cyclin-like
IPR006671Cyclin_N
IPR039361Cyclin
IPR036915Cyclin-like_sf