Ggra6291.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6291.t1
Unique NameGgra6291.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length207
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:434225..434845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_09958T0
Preferred nameCCND3
PFAMsCyclin_C,Cyclin_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00152
KEGG koko:K04503,ko:K10151,ko:K10152,ko:K14634
KEGG ReactionR02731
KEGG Pathwayko00051,ko01522,ko04068,ko04110,ko04115,ko04151,ko04152,ko04218,ko04310,ko04340,ko04371,ko04390,ko04510,ko04530,ko04630,ko04917,ko04919,ko04921,ko04933,ko04934,ko05161,ko05162,ko05165,ko05166,ko05167,ko05200,ko05202,ko05203,ko05205,ko05206,ko05210,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05222,ko05223,ko05224,ko05225,ko05226,ko05230,ko05416,map00051,map01522,map04068,map04110,map04115,map04151,map04152,map04218,map04310,map04340,map04371,map04390,map04510,map04530,map04630,map04917,map04919,map04921,map04933,map04934,map05161,map05162,map05165,map05166,map05167,map05200,map05202,map05203,map05205,map05206,map05210,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05222,map05223,map05224,map05225,map05226,map05230,map05416
KEGG ModuleM00692
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000079,GO:0000082,GO:0000122,GO:0000278,GO:0000307,GO:0000320,GO:0000785,GO:0001541,GO:0001558,GO:0001654,GO:0001775,GO:0001889,GO:0001932,GO:0001934,GO:0002119,GO:0002164,GO:0002376,GO:0003006,GO:0003008,GO:0003674,GO:0003712,GO:0003714,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006022,GO:0006023,GO:0006024,GO:0006082,GO:0006139,GO:0006275,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006950,GO:0006974,GO:0006986,GO:0006996,GO:0007005,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0007399,GO:0007423,GO:0007530,GO:0007548,GO:0007584,GO:0007589,GO:0007595,GO:0007610,GO:0007611,GO:0007613,GO:0007616,GO:0007626,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0008344,GO:0008356,GO:0008406,GO:0008584,GO:0008585,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009791,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010165,GO:0010212,GO:0010243,GO:0010389,GO:0010453,GO:0010455,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010948,GO:0010971,GO:0012505,GO:0014070,GO:0014074,GO:0016020,GO:0016043,GO:0016053,GO:0016055,GO:0016070,GO:0016301,GO:0016310,GO:0016538,GO:0016740,GO:0016772,GO:0016773,GO:0017053,GO:0018130,GO:0019207,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019752,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022008,GO:0022402,GO:0022414,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030111,GO:0030154,GO:0030178,GO:0030203,GO:0030212,GO:0030213,GO:0030234,GO:0030307,GO:0030534,GO:0030856,GO:0030857,GO:0030879,GO:0030968,GO:0031090,GO:0031099,GO:0031100,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031570,GO:0031571,GO:0031667,GO:0031960,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032006,GO:0032008,GO:0032026,GO:0032268,GO:0032270,GO:0032355,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032868,GO:0032869,GO:0032870,GO:0032875,GO:0032877,GO:0032879,GO:0032880,GO:0032943,GO:0032991,GO:0033197,GO:0033273,GO:0033327,GO:0033554,GO:0033574,GO:0033598,GO:0033599,GO:0033601,GO:0033674,GO:0033993,GO:0034097,GO:0034284,GO:0034620,GO:0034641,GO:0034645,GO:0034654,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0040008,GO:0040035,GO:0042098,GO:0042110,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042592,GO:0042826,GO:0042981,GO:0043010,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043434,GO:0043436,GO:0043549,GO:0043627,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0044321,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0044770,GO:0044772,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0044843,GO:0044877,GO:0045137,GO:0045321,GO:0045444,GO:0045471,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045737,GO:0045740,GO:0045786,GO:0045787,GO:0045859,GO:0045860,GO:0045892,GO:0045927,GO:0045930,GO:0045931,GO:0045934,GO:0045935,GO:0045937,GO:0046394,GO:0046425,GO:0046427,GO:0046483,GO:0046545,GO:0046546,GO:0046626,GO:0046649,GO:0046651,GO:0046660,GO:0046661,GO:0046677,GO:0046683,GO:0046903,GO:0048232,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048584,GO:0048585,GO:0048592,GO:0048593,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048732,GO:0048806,GO:0048856,GO:0048869,GO:0050673,GO:0050678,GO:0050679,GO:0050767,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050877,GO:0050878,GO:0050890,GO:0050896,GO:0051052,GO:0051054,GO:0051093,GO:0051094,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051301,GO:0051302,GO:0051338,GO:0051347,GO:0051384,GO:0051385,GO:0051412,GO:0051591,GO:0051592,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0051782,GO:0051960,GO:0060070,GO:0060249,GO:0060255,GO:0060284,GO:0060378,GO:0060429,GO:0060548,GO:0060749,GO:0061008,GO:0061074,GO:0061180,GO:0061377,GO:0061458,GO:0061695,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070050,GO:0070064,GO:0070141,GO:0070661,GO:0070887,GO:0071156,GO:0071157,GO:0071214,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071478,GO:0071479,GO:0071481,GO:0071495,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0080090,GO:0090068,GO:0090304,GO:0090329,GO:0090596,GO:0090727,GO:0097129,GO:0097305,GO:0097421,GO:0097472,GO:0097659,GO:0098772,GO:0104004,GO:0140096,GO:0140110,GO:0198738,GO:1900076,GO:1900087,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901653,GO:1901654,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901987,GO:1901988,GO:1901989,GO:1901990,GO:1901991,GO:1901992,GO:1902494,GO:1902531,GO:1902533,GO:1902554,GO:1902679,GO:1902749,GO:1902751,GO:1902806,GO:1902807,GO:1902808,GO:1902866,GO:1902911,GO:1903047,GO:1903432,GO:1903506,GO:1903507,GO:1903510,GO:1904029,GO:1904031,GO:1904263,GO:1904785,GO:1904787,GO:1904892,GO:1904894,GO:1905114,GO:1905933,GO:1905935,GO:1990234,GO:2000026,GO:2000045,GO:2000105,GO:2000112,GO:2000113,GO:2000134,GO:2001141
Evalue2.2e-07
EggNOG OGsKOG0656@1|root,KOG0656@2759|Eukaryota
EC3.1.3.46
Descriptioncell division
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6291Ggra6291Gracilaria gracilis GNS1m malegenetig00000879_pilon 434225..434845 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6291.t1.start1Ggra6291.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 434225..434227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6291.t1.CDS1Ggra6291.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 434225..434845 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6291.t1.exon1Ggra6291.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 434225..434845 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6291.t1.stop1Ggra6291.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 434843..434845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6291.t1Ggra6291.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 434225..434845 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6291.t1 ID=Ggra6291.t1|Name=Ggra6291.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=207bp
MREQVVAWSREMAEFLQLPAATTAIATNLFDRFLQQRAVKKGVLYALTAA
CVLIACKQLVEVRIPLRLIARRASSTAADVAAMERVVLNALSWRVHVVTP
HEVVLELCKLFPAASKRGALLDTLVLNCLMDEHMACMRATSVGVACFVLS
CLFMSSSRAYGAHAAYRYAASCGVDMKQVDACIQRLEHSIDAMFDAVDDD
HVPTPK*
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spliced messenger RNA

>Ggra6291.t1 ID=Ggra6291.t1|Name=Ggra6291.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=621bp|location=Sequence derived from alignment at tig00000879_pilon:434225..434845+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGAGCAGGTGGTGGCGTGGTCGCGTGAGATGGCGGAGTTTCTGCA
GCTTCCAGCAGCCACAACGGCAATTGCTACCAACCTGTTCGACCGCTTCC
TGCAGCAGCGCGCCGTGAAGAAGGGCGTGCTGTACGCGCTGACGGCGGCG
TGCGTGCTGATTGCGTGCAAGCAGCTGGTGGAGGTGCGCATCCCGCTGCG
ACTGATTGCAAGACGCGCCAGTAGCACGGCGGCCGACGTGGCGGCCATGG
AGCGCGTGGTGCTCAACGCGCTGTCGTGGCGCGTGCATGTGGTGACGCCG
CACGAAGTTGTGCTGGAGCTGTGCAAACTGTTCCCGGCCGCTAGCAAGCG
CGGCGCGCTGCTGGACACGCTGGTGCTCAATTGTCTGATGGACGAGCACA
TGGCGTGCATGCGCGCCACGTCGGTGGGCGTGGCGTGCTTCGTGCTGAGC
TGCCTGTTCATGAGCTCGTCGCGCGCGTACGGCGCGCACGCCGCGTACCG
CTACGCCGCGTCGTGCGGCGTGGACATGAAGCAGGTGGACGCGTGCATCC
AACGGCTGGAGCACAGCATCGACGCCATGTTCGACGCCGTCGACGACGAT
CATGTGCCGACGCCAAAGTAG
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protein sequence of Ggra6291.t1

>Ggra6291.t1 ID=Ggra6291.t1|Name=Ggra6291.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=207bp
MREQVVAWSREMAEFLQLPAATTAIATNLFDRFLQQRAVKKGVLYALTAA
CVLIACKQLVEVRIPLRLIARRASSTAADVAAMERVVLNALSWRVHVVTP
HEVVLELCKLFPAASKRGALLDTLVLNCLMDEHMACMRATSVGVACFVLS
CLFMSSSRAYGAHAAYRYAASCGVDMKQVDACIQRLEHSIDAMFDAVDDD
HVPTPK*
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mRNA from alignment at tig00000879_pilon:434225..434845+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6291.t1 ID=Ggra6291.t1|Name=Ggra6291.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=621bp|location=Sequence derived from alignment at tig00000879_pilon:434225..434845+ (Gracilaria gracilis GNS1m male)
ATGCGCGAGCAGGTGGTGGCGTGGTCGCGTGAGATGGCGGAGTTTCTGCA
GCTTCCAGCAGCCACAACGGCAATTGCTACCAACCTGTTCGACCGCTTCC
TGCAGCAGCGCGCCGTGAAGAAGGGCGTGCTGTACGCGCTGACGGCGGCG
TGCGTGCTGATTGCGTGCAAGCAGCTGGTGGAGGTGCGCATCCCGCTGCG
ACTGATTGCAAGACGCGCCAGTAGCACGGCGGCCGACGTGGCGGCCATGG
AGCGCGTGGTGCTCAACGCGCTGTCGTGGCGCGTGCATGTGGTGACGCCG
CACGAAGTTGTGCTGGAGCTGTGCAAACTGTTCCCGGCCGCTAGCAAGCG
CGGCGCGCTGCTGGACACGCTGGTGCTCAATTGTCTGATGGACGAGCACA
TGGCGTGCATGCGCGCCACGTCGGTGGGCGTGGCGTGCTTCGTGCTGAGC
TGCCTGTTCATGAGCTCGTCGCGCGCGTACGGCGCGCACGCCGCGTACCG
CTACGCCGCGTCGTGCGGCGTGGACATGAAGCAGGTGGACGCGTGCATCC
AACGGCTGGAGCACAGCATCGACGCCATGTTCGACGCCGTCGACGACGAT
CATGTGCCGACGCCAAAGTAG
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Coding sequence (CDS) from alignment at tig00000879_pilon:434225..434845+

>Ggra6291.t1 ID=Ggra6291.t1|Name=Ggra6291.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=621bp|location=Sequence derived from alignment at tig00000879_pilon:434225..434845+ (Gracilaria gracilis GNS1m male)
ATGCGCGAGCAGGTGGTGGCGTGGTCGCGTGAGATGGCGGAGTTTCTGCA
GCTTCCAGCAGCCACAACGGCAATTGCTACCAACCTGTTCGACCGCTTCC
TGCAGCAGCGCGCCGTGAAGAAGGGCGTGCTGTACGCGCTGACGGCGGCG
TGCGTGCTGATTGCGTGCAAGCAGCTGGTGGAGGTGCGCATCCCGCTGCG
ACTGATTGCAAGACGCGCCAGTAGCACGGCGGCCGACGTGGCGGCCATGG
AGCGCGTGGTGCTCAACGCGCTGTCGTGGCGCGTGCATGTGGTGACGCCG
CACGAAGTTGTGCTGGAGCTGTGCAAACTGTTCCCGGCCGCTAGCAAGCG
CGGCGCGCTGCTGGACACGCTGGTGCTCAATTGTCTGATGGACGAGCACA
TGGCGTGCATGCGCGCCACGTCGGTGGGCGTGGCGTGCTTCGTGCTGAGC
TGCCTGTTCATGAGCTCGTCGCGCGCGTACGGCGCGCACGCCGCGTACCG
CTACGCCGCGTCGTGCGGCGTGGACATGAAGCAGGTGGACGCGTGCATCC
AACGGCTGGAGCACAGCATCGACGCCATGTTCGACGCCGTCGACGACGAT
CATGTGCCGACGCCAAAGTAG
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