Ggra6287.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6287.t1
Unique NameGgra6287.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length287
Homology
BLAST of Ggra6287.t1 vs. uniprot
Match: A0A2V3IWZ8 (Ribosomal RNA-processing protein 8 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWZ8_9FLOR)

HSP 1 Score: 296 bits (759), Expect = 4.790e-98
Identity = 157/244 (64.34%), Postives = 177/244 (72.54%), Query Frame = 0
Query:   45 MLNESMYTDTGAASKAMMDANPDLFDVYHAGYAEQTKQWPKNPLDDIIQYLLSRKEAMKILDLGCGEARLAKEVSHHQVCSFDLVSVNETVCACDIGNLPLEEEYADVAVFCLSLMGTNYGDFLKEAHRVLKPKGLLLIAEVASRFDGHDPSRFAAGVESLGYCLLRDHQLTRLSQKQEXXXXXXXXXXXXXXXXXAGQALR--ASAFFYLFAFRKVEGKRKGGPKQADDSKLPSLAACRYKRR 286
            MLNESMYT TGA SKAMMDANP LF+VYH+GYAEQ + WP+NPLDDII+YL ++  ++KI+DLGCGEARLAKEV    V SFDLV+VNETV ACDI  LPLE+EYADVAVFCLSLMGTNY DFL EA R LK KGLLLIAEVASRF GH+PS F AGVESLG+ LL  H L++ S K E                    A    +SAFFYLFAFRK E K     + +  S LP+LAAC YKRR
Sbjct:    1 MLNESMYTHTGATSKAMMDANPQLFEVYHSGYAEQVRMWPRNPLDDIIKYLSTQSSSLKIIDLGCGEARLAKEVPQRTVKSFDLVAVNETVTACDISKLPLEDEYADVAVFCLSLMGTNYSDFLIEARRALKWKGLLLIAEVASRFSGHNPSNFVAGVESLGFRLLPGHTLSQFSGKPEKHMGRNKKRKRGAQASNGIDASEKGSSAFFYLFAFRKAE-KEISNEEPSGSSHLPNLAACLYKRR 243          
BLAST of Ggra6287.t1 vs. uniprot
Match: R7QG02 (Ribosomal RNA-processing protein 8 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG02_CHOCR)

HSP 1 Score: 237 bits (605), Expect = 1.050e-74
Identity = 131/243 (53.91%), Postives = 165/243 (67.90%), Query Frame = 0
Query:   50 MYTDTGAASKAMMDANPDLFDVYHAGYAEQTKQWPKNPLDDIIQYLLSRKEAMKILDLGCGEARLAKEVSHHQVCSFDLVSVNETVCACDIGNLPLEEEYADVAVFCLSLMGTNYGDFLKEAHRVLKPKGLLLIAEVASRFDGHDPSRFAAGVESLGYCLLRDHQLTRLSQK------QEXXXXXXXXXXXXXXXXXAGQALRASAFFYLFAFRKVEGKRKGGPKQADDSKLPSLAACRYKRR 286
            MYT TG  S+ +M  NP LF+VYH GY+EQ K+WP NPLDDII++L ++  +++I DLGCGEARLAK V   QV SFDLV+ NE V ACDI N+PL +   DV VFCLSLMGTNY DF+ EA R+L P GL+L+AEVASRF+ HDP  F  GVESLG+ +   H LT+   +      ++ XXXXXXXXXXX       ++L ++ FFY FAF  ++   KG   +     LP LAAC YK+R
Sbjct:    1 MYTTTGNESRQLMQENPHLFNVYHMGYSEQVKRWPSNPLDDIIKFLATQDPSLRIADLGCGEARLAKNVPQRQVMSFDLVANNERVTACDIANVPLPDSSVDVVVFCLSLMGTNYADFITEARRILVPDGLMLVAEVASRFEDHDPKDFVRGVESLGFNVDSSHPLTKTHLQSTPVKGKQRXXXXXXXXXXXHKTAQLEESLSSAVFFYKFAFISIKDTSKGDSTRKAGKALPKLAACVYKKR 243          
BLAST of Ggra6287.t1 vs. uniprot
Match: D8S322 (Ribosomal RNA-processing protein 8 n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S322_SELML)

HSP 1 Score: 196 bits (497), Expect = 1.030e-58
Identity = 114/257 (44.36%), Postives = 146/257 (56.81%), Query Frame = 0
Query:   34 MRKKLSSAQFRMLNESMYTDTGAASKAMMDANPDLFDVYHAGYAEQTKQWPKNPLDDIIQYLLSRKEAMKILDLGCGEARLAKEVSHHQVCSFDLVSVNETVCACDIGNLPLEEEYADVAVFCLSLMGTNYGDFLKEAHRVLKPKGLLLIAEVASRFD----GHDPSRFAAGVESLGYCLLRDHQLTRLSQKQEXXXXXXXXXXXXXXXXXAGQALRASAFFYLFAFRKVEGKRKGGPKQADDSKLPSLAACRYKRR 286
            MR++LS  QFRMLNE +YT +G  +K   D +PD F +YHAGY EQ  +WPK P+D II++L SR   + + D GCG+ARLAK V + +V SFDLVS +  V AC++ + P+     DVAVFCLSLMGT+Y  +LKEAHRVLK KG LLIAEV SRFD    G DP  F  G++SLG+ L++     R+                                F LF  RK +  R    K +     P L  C YK+R
Sbjct:    1 MRQRLSGGQFRMLNEVLYTRSGEGAKDYFDKDPDAFKLYHAGYQEQMSRWPKLPVDVIIEWLNSRNSNLVVADFGCGDARLAKSVKN-KVFSFDLVSNDPVVTACNMASTPIPSSSVDVAVFCLSLMGTDYPSYLKEAHRVLKAKGWLLIAEVKSRFDPANHGADPQVFLRGLKSLGFSLVKQDDSNRM--------------------------------FLLFYLRKDKDDRSSSKKLS----WPELKPCLYKKR 220          
BLAST of Ggra6287.t1 vs. uniprot
Match: A0A2C9UFX8 (Ribosomal RNA-processing protein 8 n=5 Tax=Crotonoideae TaxID=235631 RepID=A0A2C9UFX8_MANES)

HSP 1 Score: 194 bits (494), Expect = 1.640e-57
Identity = 120/293 (40.96%), Postives = 158/293 (53.92%), Query Frame = 0
Query:    3 KDLPSSS-----ERSSNVPQRGIVKKQRKLSSLQQRMRKKLSSAQFRMLNESMYTDTGAASKAMMDANPDLFDVYHAGYAEQTKQWPKNPLDDIIQYLLSRKEAMKILDLGCGEARLAKEVSHHQVCSFDLVSVNETVCACDIGNLPLEEEYADVAVFCLSLMGTNYGDFLKEAHRVLKPKGLLLIAEVASRFD----GHDPSRFAAGVESLGYCLLRDHQLTRLSQKQEXXXXXXXXXXXXXXXXXAGQALRASAFFYLFAFRKVEGKRKGGPKQADDSKLPSLAACRYKRR 286
            K LPS++      +    P+     K+ K SS   +MR +LS   FRMLNE +YT TG  +      +P LFD+YHAGY EQ   WP+ P++ I+ +L  R  ++ + D GCG+ARLAK V + +V SFDLVS N +V ACD+ N PL+    DVAVFCLSLMGTN+  +L+EAHRVLKP G LLIAEV SRFD    G DP++F+  +  LG+      +L   S K                             F L  F+K E +      Q  + + P L  C YKRR
Sbjct:   22 KPLPSNNAGQFHRQEEPEPKNPSSSKKPKSSSFLDKMRARLSGGHFRMLNEKLYTCTGEEALKCFKEDPSLFDMYHAGYQEQMSHWPEQPVNIIMNWLKDRSSSLVVADFGCGDARLAKNVKN-KVFSFDLVSNNPSVIACDMANTPLDSSSVDVAVFCLSLMGTNFPSYLEEAHRVLKPNGWLLIAEVKSRFDPNTGGADPNKFSKAITDLGF----SSKLKDFSNKM----------------------------FILLYFQKKEKQSS----QTKEIEWPELKPCLYKRR 277          
BLAST of Ggra6287.t1 vs. uniprot
Match: R0F5S0 (Ribosomal RNA-processing protein 8 n=8 Tax=Camelineae TaxID=980083 RepID=R0F5S0_9BRAS)

HSP 1 Score: 192 bits (489), Expect = 1.310e-56
Identity = 114/269 (42.38%), Postives = 151/269 (56.13%), Query Frame = 0
Query:   23 KQRKLSSLQQRMRKKLSSAQFRMLNESMYTDTGAASKAMMDANPDLFDVYHAGYAEQTKQWPKNPLDDIIQYLLSRKEAMKILDLGCGEARLAKEVSHHQVCSFDLVSVNETVCACDIGNLPLEEEYADVAVFCLSLMGTNYGDFLKEAHRVLKPKGLLLIAEVASRFD----GHDPSRFAAGVESLGYC-LLRDHQLTRLSQKQEXXXXXXXXXXXXXXXXXAGQALRASAFFYLFAFRKVEGKRKGGPKQADDSKLPSLAACRYKRR 286
            K+ K S+    +R++LS  QFRMLNE +YT +G  +      +P++FD+YH GY +Q   WP+ P++ II++LLSR  ++ + D GCG+AR+AK V + +V SFDLVS N +V ACD+ N  LE    DVAVFCLSLMGTNY  ++KEAHRVL+P G+LLIAEV SRFD    G DP  F   V  LG+  +L+D                                  ++  F L  F+K E       K     K P L AC YKRR
Sbjct:   59 KRPKPSNFLDTLRERLSGGQFRMLNEKLYTCSGQEALDYFKEDPEMFDMYHTGYQQQMTNWPELPVNSIIEWLLSRSSSLVVADFGCGDARIAKSVKN-KVFSFDLVSKNPSVIACDMSNTSLESSSVDVAVFCLSLMGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGADPKDFVKAVCDLGFTSVLKDF---------------------------------SNKMFILLHFKKKEQLNSNEKK----IKWPELKACLYKRR 289          
BLAST of Ggra6287.t1 vs. uniprot
Match: A0A2P2KFV3 (Ribosomal RNA-processing protein 8 n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2KFV3_RHIMU)

HSP 1 Score: 192 bits (489), Expect = 1.470e-56
Identity = 99/191 (51.83%), Postives = 128/191 (67.02%), Query Frame = 0
Query:   23 KQRKLSSLQQRMRKKLSSAQFRMLNESMYTDTGAASKAMMDANPDLFDVYHAGYAEQTKQWPKNPLDDIIQYLLSRKEAMKILDLGCGEARLAKEVSHHQVCSFDLVSVNETVCACDIGNLPLEEEYADVAVFCLSLMGTNYGDFLKEAHRVLKPKGLLLIAEVASRFD----GHDPSRFAAGVESLGYCL 209
            K+ K +S  ++MR KLS   FRM+NE +YT TG  +      +P LFD+YHAGY EQ   WP+ P++ I+ +L     A+ + D GCG+A LAK V++ +V SFDLVS N +V ACD+ N PL     DVAVFCLSLMGTNY  +++EAHRVLKP G LLIAEV SRFD    G DP RF+  + +LG+ L
Sbjct:   63 KRSKSASFLEKMRAKLSGGHFRMINEKLYTCTGEEAHNYFKEDPSLFDMYHAGYQEQMSHWPEQPINVIVNWLKGHSPALIVADFGCGDACLAKNVNN-KVFSFDLVSNNPSVVACDMSNTPLGASSVDVAVFCLSLMGTNYPSYIQEAHRVLKPSGWLLIAEVKSRFDPNNGGADPKRFSKAISNLGFAL 252          
BLAST of Ggra6287.t1 vs. uniprot
Match: A0A087GT98 (Ribosomal RNA-processing protein 8 n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087GT98_ARAAL)

HSP 1 Score: 192 bits (487), Expect = 2.770e-56
Identity = 114/271 (42.07%), Postives = 149/271 (54.98%), Query Frame = 0
Query:   20 IVKKQRKLSSLQQRMRKKLSSAQFRMLNESMYTDTGAASKAMMDANPDLFDVYHAGYAEQTKQWPKNPLDDIIQYLLSRKEAMKILDLGCGEARLAKEVSHHQVCSFDLVSVNETVCACDIGNLPLEEEYADVAVFCLSLMGTNYGDFLKEAHRVLKPKGLLLIAEVASRFD----GHDPSRFAAGVESLGYCLLRDHQLTRLSQKQEXXXXXXXXXXXXXXXXXAGQALRASAFFYLFAFRKVEGKRKGGPKQADDSKLPSLAACRYKRR 286
            +  KQ K S+    +R+KLS  QFRMLNE +YT +G  +      +PD+FD+YH GY +Q   WP+ P++ +I +L SR  ++ + D GCG+AR+AK V + +V SFDLVS N +V  CD+ N+PLE    DVAVFCLSLMGTNY  ++ EA+RVL+P G LLIAEV SRFD    G DP  F   V +LG+      +L  +S K                             F L  F+K E       K     K P L AC YKRR
Sbjct:   58 VSSKQPKPSNFLDALREKLSGGQFRMLNEKLYTCSGKEALDYFKEDPDMFDMYHTGYQQQMSNWPELPVNSVINWLQSRNSSLVVADFGCGDARIAKSVKN-KVFSFDLVSKNPSVVTCDMSNVPLESSSVDVAVFCLSLMGTNYSSYINEAYRVLRPSGWLLIAEVKSRFDPNNGGADPKDFVKAVCNLGFT----SELKDVSNKM----------------------------FILLHFQKKEQTNSNEKK----IKWPELKACLYKRR 291          
BLAST of Ggra6287.t1 vs. uniprot
Match: A0A7G2FJG5 (Ribosomal RNA-processing protein 8 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A7G2FJG5_ARATH)

HSP 1 Score: 189 bits (481), Expect = 3.830e-56
Identity = 110/258 (42.64%), Postives = 143/258 (55.43%), Query Frame = 0
Query:   34 MRKKLSSAQFRMLNESMYTDTGAASKAMMDANPDLFDVYHAGYAEQTKQWPKNPLDDIIQYLLSRKEAMKILDLGCGEARLAKEVSHHQVCSFDLVSVNETVCACDIGNLPLEEEYADVAVFCLSLMGTNYGDFLKEAHRVLKPKGLLLIAEVASRFD----GHDPSRFAAGVESLGYC-LLRDHQLTRLSQKQEXXXXXXXXXXXXXXXXXAGQALRASAFFYLFAFRKVEGKRKGGPKQADDSKLPSLAACRYKRR 286
            +R++LS  QFRMLNE +YT +G  +      +P +FD+YH GY +Q   WP+ P++ II +LLS   ++ + D GCG+AR+AK V + +V SFDLVS N +V ACD+ N  LE    DVAVFCLSLMGTNY  ++KEAHRVL+P G+LLIAEV SRFD    G DP  F   V  LG+  +L+D                                  ++  F LF F+K E             K P L AC YKRR
Sbjct:   13 LRERLSGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNWPELPVNSIINWLLSNSSSLVVADFGCGDARIAKSVKN-KVFSFDLVSKNPSVIACDMSNTSLESSSVDVAVFCLSLMGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGADPKDFVKAVCDLGFTSVLKDF---------------------------------SNKMFILFHFKKKEQMNSN----QKIIKWPELKACLYKRR 232          
BLAST of Ggra6287.t1 vs. uniprot
Match: A0A438EFQ4 (Ribosomal RNA-processing protein 8 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EFQ4_VITVI)

HSP 1 Score: 191 bits (484), Expect = 8.280e-56
Identity = 97/191 (50.79%), Postives = 132/191 (69.11%), Query Frame = 0
Query:   23 KQRKLSSLQQRMRKKLSSAQFRMLNESMYTDTGAASKAMMDANPDLFDVYHAGYAEQTKQWPKNPLDDIIQYLLSRKEAMKILDLGCGEARLAKEVSHHQVCSFDLVSVNETVCACDIGNLPLEEEYADVAVFCLSLMGTNYGDFLKEAHRVLKPKGLLLIAEVASRFD----GHDPSRFAAGVESLGYCL 209
            K +  SS   +MR +LS   FRM+NE +YT TG+ + +  + +P LF+VYHAGY EQ   WP+ P++ II++L     ++ + D GCG+ARLA+ V + +V SFDLVS + +V  CD+ N+PLE    DVAVFCLSLMGTN+ ++L+EAHRVLKP G LLIAEV SRFD    G DP+RF+  +  LG+ L
Sbjct:   33 KSKSSSSFLDKMRARLSGGHFRMINEKLYTCTGSEALSYFEEDPALFNVYHAGYQEQMSHWPQQPVNIIIKWLKDHSPSLIVADFGCGDARLARNVKN-KVFSFDLVSSDPSVIVCDMSNMPLESSSIDVAVFCLSLMGTNFSNYLQEAHRVLKPCGWLLIAEVKSRFDPTNGGADPNRFSKAICKLGFTL 222          
BLAST of Ggra6287.t1 vs. uniprot
Match: RRP8 (Ribosomal RNA-processing protein 8 n=7 Tax=Arabidopsis TaxID=3701 RepID=RRP8_ARATH)

HSP 1 Score: 190 bits (482), Expect = 1.390e-55
Identity = 113/269 (42.01%), Postives = 148/269 (55.02%), Query Frame = 0
Query:   23 KQRKLSSLQQRMRKKLSSAQFRMLNESMYTDTGAASKAMMDANPDLFDVYHAGYAEQTKQWPKNPLDDIIQYLLSRKEAMKILDLGCGEARLAKEVSHHQVCSFDLVSVNETVCACDIGNLPLEEEYADVAVFCLSLMGTNYGDFLKEAHRVLKPKGLLLIAEVASRFD----GHDPSRFAAGVESLGYC-LLRDHQLTRLSQKQEXXXXXXXXXXXXXXXXXAGQALRASAFFYLFAFRKVEGKRKGGPKQADDSKLPSLAACRYKRR 286
            K+ K S+    +R++LS  QFRMLNE +YT +G  +      +P +FD+YH GY +Q   WP+ P++ II +LLS   ++ + D GCG+AR+AK V + +V SFDLVS N +V ACD+ N  LE    DVAVFCLSLMGTNY  ++KEAHRVL+P G+LLIAEV SRFD    G DP  F   V  LG+  +L+D                                  ++  F LF F+K E             K P L AC YKRR
Sbjct:   57 KRPKPSNFLDALRERLSGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNWPELPVNSIINWLLSNSSSLVVADFGCGDARIAKSVKN-KVFSFDLVSKNPSVIACDMSNTSLESSSVDVAVFCLSLMGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGADPKDFVKAVCDLGFTSVLKDF---------------------------------SNKMFILFHFKKKEQMNSN----QKIIKWPELKACLYKRR 287          
The following BLAST results are available for this feature:
BLAST of Ggra6287.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IWZ84.790e-9864.34Ribosomal RNA-processing protein 8 n=1 Tax=Gracila... [more]
R7QG021.050e-7453.91Ribosomal RNA-processing protein 8 n=1 Tax=Chondru... [more]
D8S3221.030e-5844.36Ribosomal RNA-processing protein 8 n=4 Tax=Selagin... [more]
A0A2C9UFX81.640e-5740.96Ribosomal RNA-processing protein 8 n=5 Tax=Crotono... [more]
R0F5S01.310e-5642.38Ribosomal RNA-processing protein 8 n=8 Tax=Camelin... [more]
A0A2P2KFV31.470e-5651.83Ribosomal RNA-processing protein 8 n=2 Tax=Rhizoph... [more]
A0A087GT982.770e-5642.07Ribosomal RNA-processing protein 8 n=1 Tax=Arabis ... [more]
A0A7G2FJG53.830e-5642.64Ribosomal RNA-processing protein 8 n=1 Tax=Arabido... [more]
A0A438EFQ48.280e-5650.79Ribosomal RNA-processing protein 8 n=2 Tax=Vitis v... [more]
RRP81.390e-5542.01Ribosomal RNA-processing protein 8 n=7 Tax=Arabido... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007823Ribosomal RNA processing protein 8PFAMPF05148Methyltransf_8coord: 29..209
e-value: 1.3E-67
score: 227.9
IPR007823Ribosomal RNA processing protein 8PANTHERPTHR12787UNCHARACTERIZEDcoord: 14..286
NoneNo IPR availableGENE3D3.40.50.150Vaccinia Virus protein VP39coord: 86..286
e-value: 2.6E-43
score: 149.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 265..286
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 219..242
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableCDDcd02440AdoMet_MTasescoord: 103..183
e-value: 4.58553E-8
score: 48.1951
IPR042036Ribosomal RNA-processing protein 8, N-terminal domainGENE3D1.10.10.2150coord: 34..84
e-value: 1.8E-20
score: 74.8
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 67..206

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:425590..426450 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6287.t1Ggra6287.t1Gracilaria gracilis GNS1m malemRNAtig00000879_pilon 425590..426450 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6287.t1 ID=Ggra6287.t1|Name=Ggra6287.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=287bp
MRKDLPSSSERSSNVPQRGIVKKQRKLSSLQQRMRKKLSSAQFRMLNESM
YTDTGAASKAMMDANPDLFDVYHAGYAEQTKQWPKNPLDDIIQYLLSRKE
AMKILDLGCGEARLAKEVSHHQVCSFDLVSVNETVCACDIGNLPLEEEYA
DVAVFCLSLMGTNYGDFLKEAHRVLKPKGLLLIAEVASRFDGHDPSRFAA
GVESLGYCLLRDHQLTRLSQKQEKPPKRKKRRKRPAEAPEAGQALRASAF
FYLFAFRKVEGKRKGGPKQADDSKLPSLAACRYKRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007823RRP8
IPR042036RRP8_N
IPR029063SAM-dependent_MTases