Ggra6287.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6287.t1
Unique NameGgra6287.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:425590..426450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ21029
PFAMsMethyltransf_8
Max annot lvl35493|Streptophyta
KEGG koko:K14850
GOsGO:0000183,GO:0000785,GO:0000792,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005677,GO:0005694,GO:0005730,GO:0006325,GO:0006342,GO:0006355,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016740,GO:0016741,GO:0017053,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0033553,GO:0035064,GO:0040029,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071840,GO:0080090,GO:0090568,GO:0140030,GO:0140034,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue1.01e-58
EggNOG OGsKOG3045@1|root,KOG3045@2759|Eukaryota,37KY0@33090|Viridiplantae,3GB5X@35493|Streptophyta
EC2.1.1.287
Descriptionribosomal RNA-processing protein
COG categoryA
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6287Ggra6287Gracilaria gracilis GNS1m malegenetig00000879_pilon 425590..426450 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6287.t1.stop1Ggra6287.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 425590..425592 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6287.t1.CDS1Ggra6287.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 425590..426450 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6287.t1.exon1Ggra6287.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 425590..426450 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6287.t1.start1Ggra6287.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 426448..426450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6287.t1Ggra6287.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 425590..426450 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6287.t1 ID=Ggra6287.t1|Name=Ggra6287.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=287bp
MRKDLPSSSERSSNVPQRGIVKKQRKLSSLQQRMRKKLSSAQFRMLNESM
YTDTGAASKAMMDANPDLFDVYHAGYAEQTKQWPKNPLDDIIQYLLSRKE
AMKILDLGCGEARLAKEVSHHQVCSFDLVSVNETVCACDIGNLPLEEEYA
DVAVFCLSLMGTNYGDFLKEAHRVLKPKGLLLIAEVASRFDGHDPSRFAA
GVESLGYCLLRDHQLTRLSQKQEKPPKRKKRRKRPAEAPEAGQALRASAF
FYLFAFRKVEGKRKGGPKQADDSKLPSLAACRYKRR*
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spliced messenger RNA

>Ggra6287.t1 ID=Ggra6287.t1|Name=Ggra6287.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000879_pilon:425590..426450- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAAGGATCTACCCTCCTCGTCCGAGAGAAGCTCCAATGTGCCACA
GCGTGGAATAGTAAAGAAGCAGAGAAAGTTATCTTCCCTTCAGCAGCGGA
TGAGGAAAAAGCTTTCATCTGCACAATTCCGCATGCTTAATGAATCTATG
TATACCGACACAGGTGCAGCATCGAAGGCTATGATGGACGCTAATCCCGA
CCTCTTTGACGTGTATCATGCAGGATATGCTGAACAGACCAAGCAATGGC
CTAAGAATCCTTTGGACGACATCATCCAATACCTCCTTTCCCGAAAAGAG
GCGATGAAGATCCTTGATTTGGGTTGTGGAGAAGCGCGGTTAGCAAAGGA
AGTTTCGCACCATCAGGTGTGTTCATTCGACCTAGTTTCGGTGAACGAAA
CTGTGTGTGCATGTGATATTGGCAACTTGCCGTTAGAAGAAGAATATGCT
GATGTTGCCGTTTTTTGCCTTTCCTTGATGGGAACCAACTATGGTGATTT
TCTCAAAGAGGCACATCGCGTCCTTAAACCCAAAGGCTTGCTACTCATTG
CAGAGGTCGCGTCAAGATTTGACGGTCATGATCCATCACGATTTGCAGCA
GGAGTCGAATCGCTTGGCTATTGTCTTCTTCGTGATCATCAGCTGACGCG
ACTTTCCCAGAAGCAAGAAAAGCCACCTAAACGAAAGAAAAGAAGGAAGC
GCCCAGCCGAAGCCCCGGAAGCCGGTCAAGCCCTGAGGGCTAGTGCATTC
TTTTACCTTTTTGCGTTTAGAAAAGTGGAAGGAAAACGGAAAGGTGGACC
GAAACAAGCGGATGATTCAAAACTACCATCTCTTGCTGCGTGCCGGTATA
AACGACGATAA
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protein sequence of Ggra6287.t1

>Ggra6287.t1 ID=Ggra6287.t1|Name=Ggra6287.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=287bp
MRKDLPSSSERSSNVPQRGIVKKQRKLSSLQQRMRKKLSSAQFRMLNESM
YTDTGAASKAMMDANPDLFDVYHAGYAEQTKQWPKNPLDDIIQYLLSRKE
AMKILDLGCGEARLAKEVSHHQVCSFDLVSVNETVCACDIGNLPLEEEYA
DVAVFCLSLMGTNYGDFLKEAHRVLKPKGLLLIAEVASRFDGHDPSRFAA
GVESLGYCLLRDHQLTRLSQKQEKPPKRKKRRKRPAEAPEAGQALRASAF
FYLFAFRKVEGKRKGGPKQADDSKLPSLAACRYKRR*
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mRNA from alignment at tig00000879_pilon:425590..426450-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6287.t1 ID=Ggra6287.t1|Name=Ggra6287.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000879_pilon:425590..426450- (Gracilaria gracilis GNS1m male)
ATGCGCAAGGATCTACCCTCCTCGTCCGAGAGAAGCTCCAATGTGCCACA
GCGTGGAATAGTAAAGAAGCAGAGAAAGTTATCTTCCCTTCAGCAGCGGA
TGAGGAAAAAGCTTTCATCTGCACAATTCCGCATGCTTAATGAATCTATG
TATACCGACACAGGTGCAGCATCGAAGGCTATGATGGACGCTAATCCCGA
CCTCTTTGACGTGTATCATGCAGGATATGCTGAACAGACCAAGCAATGGC
CTAAGAATCCTTTGGACGACATCATCCAATACCTCCTTTCCCGAAAAGAG
GCGATGAAGATCCTTGATTTGGGTTGTGGAGAAGCGCGGTTAGCAAAGGA
AGTTTCGCACCATCAGGTGTGTTCATTCGACCTAGTTTCGGTGAACGAAA
CTGTGTGTGCATGTGATATTGGCAACTTGCCGTTAGAAGAAGAATATGCT
GATGTTGCCGTTTTTTGCCTTTCCTTGATGGGAACCAACTATGGTGATTT
TCTCAAAGAGGCACATCGCGTCCTTAAACCCAAAGGCTTGCTACTCATTG
CAGAGGTCGCGTCAAGATTTGACGGTCATGATCCATCACGATTTGCAGCA
GGAGTCGAATCGCTTGGCTATTGTCTTCTTCGTGATCATCAGCTGACGCG
ACTTTCCCAGAAGCAAGAAAAGCCACCTAAACGAAAGAAAAGAAGGAAGC
GCCCAGCCGAAGCCCCGGAAGCCGGTCAAGCCCTGAGGGCTAGTGCATTC
TTTTACCTTTTTGCGTTTAGAAAAGTGGAAGGAAAACGGAAAGGTGGACC
GAAACAAGCGGATGATTCAAAACTACCATCTCTTGCTGCGTGCCGGTATA
AACGACGATAA
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Coding sequence (CDS) from alignment at tig00000879_pilon:425590..426450-

>Ggra6287.t1 ID=Ggra6287.t1|Name=Ggra6287.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=861bp|location=Sequence derived from alignment at tig00000879_pilon:425590..426450- (Gracilaria gracilis GNS1m male)
ATGCGCAAGGATCTACCCTCCTCGTCCGAGAGAAGCTCCAATGTGCCACA
GCGTGGAATAGTAAAGAAGCAGAGAAAGTTATCTTCCCTTCAGCAGCGGA
TGAGGAAAAAGCTTTCATCTGCACAATTCCGCATGCTTAATGAATCTATG
TATACCGACACAGGTGCAGCATCGAAGGCTATGATGGACGCTAATCCCGA
CCTCTTTGACGTGTATCATGCAGGATATGCTGAACAGACCAAGCAATGGC
CTAAGAATCCTTTGGACGACATCATCCAATACCTCCTTTCCCGAAAAGAG
GCGATGAAGATCCTTGATTTGGGTTGTGGAGAAGCGCGGTTAGCAAAGGA
AGTTTCGCACCATCAGGTGTGTTCATTCGACCTAGTTTCGGTGAACGAAA
CTGTGTGTGCATGTGATATTGGCAACTTGCCGTTAGAAGAAGAATATGCT
GATGTTGCCGTTTTTTGCCTTTCCTTGATGGGAACCAACTATGGTGATTT
TCTCAAAGAGGCACATCGCGTCCTTAAACCCAAAGGCTTGCTACTCATTG
CAGAGGTCGCGTCAAGATTTGACGGTCATGATCCATCACGATTTGCAGCA
GGAGTCGAATCGCTTGGCTATTGTCTTCTTCGTGATCATCAGCTGACGCG
ACTTTCCCAGAAGCAAGAAAAGCCACCTAAACGAAAGAAAAGAAGGAAGC
GCCCAGCCGAAGCCCCGGAAGCCGGTCAAGCCCTGAGGGCTAGTGCATTC
TTTTACCTTTTTGCGTTTAGAAAAGTGGAAGGAAAACGGAAAGGTGGACC
GAAACAAGCGGATGATTCAAAACTACCATCTCTTGCTGCGTGCCGGTATA
AACGACGATAA
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