Ggra6267.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6267.t1
Unique NameGgra6267.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length441
Homology
BLAST of Ggra6267.t1 vs. uniprot
Match: A0A2V3IME0 (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IME0_9FLOR)

HSP 1 Score: 255 bits (651), Expect = 1.140e-77
Identity = 167/372 (44.89%), Postives = 225/372 (60.48%), Query Frame = 0
Query:   69 SSDENKLIQSLTFQMTELIESHSCLICHEILNAPVRLPCTHLFCSLCIRRHLSRSSTCPHPTCPTDCTTSDLDPLRHYDVTLEKLRIMQRTSVPGLKRVQCSSLPLPGNLSRATLVNKLRSVGLQTIGTLETLQVRYREFVLRVNAASDSAFGAPKHKVLDQVRRYEEALSEPQRGLNGFSGRSAHQLVAQQGDSFEELVRKTKRRKDLQTRASASQDIPQRHEKERVEPAEGDKKPDSGEESKDVKQDKPKLQGTSNPRKRPRSATAQSHSAEKAVDVHIVNLPPTLVSCTEV----ALCSSGVNIQP-GKYLPGQTPSSVQKLTQV--TPPSASNPNLTEEQIERMRRNKMAAMERRRQNSQQYVRRLPF 433
            S++E  LI  L   +  L ESH+C ICH++LNAPVRLPC H+FCSLCIRRHL+RSS CP+PTC   CT+S L  LR+YD  L +LR + RT +    R   + LPLPG+LSR  LV KL   GL  +GT+E L  RYRE+VLR NAA+DSA GA K  + D VRRYE+ALS  Q  ++ F  +   +   ++GD+FE+LVRKT++R  ++ R+ A+Q+  Q   K   +P E D +P   + S   +   P+ +      KRP   + Q+H   K           +  SC++     A+ S+  +IQP   YL   TPSS  K TQ+  TP +     LT EQ ER++RN  AAME+R++NSQ YVRRL F
Sbjct:    9 SANEKDLINFLEKSLHALAESHNCPICHDMLNAPVRLPCHHIFCSLCIRRHLTRSSICPYPTCRRACTSSALVALRNYDAHLAQLRHVSRTQLTP-SRTTLAQLPLPGSLSRPNLVKKLSKAGLSAVGTVEVLSNRYREYVLRYNAAADSASGASKQALADAVRRYEDALSANQATMDTFFEKVKDESTVKRGDNFEDLVRKTRQRNHVERRSQATQEGVQNSRKPNGDP-EPDIQPQKCDTSGGKRIRAPRDEANDIAPKRP--CSGQAHIGRKTTRNGASPTRFSKASCSDKRSQHAVKSASFDIQPYSSYL--DTPSSENKNTQLVATPSTKEAQALTREQEERIQRNMKAAMEKRQKNSQSYVRRLSF 374          
BLAST of Ggra6267.t1 vs. uniprot
Match: R7QTP7 (E3 ubiquitin ligase, putative n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTP7_CHOCR)

HSP 1 Score: 118 bits (296), Expect = 3.060e-25
Identity = 76/199 (38.19%), Postives = 103/199 (51.76%), Query Frame = 0
Query:   82 QMTELIESHSCLICHEILNAPVRLPCTHLFCSLCIRRHLSRSSTCPHPTCPTDCTTSDLDPLRHYDVTLEKLR--IMQRTSVPGLKRVQCSSLPLPGNLSRATLVNKLRSVGLQTIGTLETLQVRYREFVLRVNAASDSAFGAPKHKVLDQVRRYEEALSEPQRGL------NGFSGRSAH--QLVAQQGDSFEELVRK 270
            ++  + E+  C ICH  + APV LPC H+FCS C+RRHLS  S CP P C   CTT  L PLR  DV LE +R      TS    K      L      ++   V++LR  GL T G+L  L  R REFV+R NA  D+A   PK ++ DQ+   E   +  +           F+ + A   QL A+ GD F++L++K
Sbjct:   60 RLAAITEAFGCPICHATVRAPVLLPCEHMFCSECVRRHLSNESACPQPFCRAACTTKHLVPLRALDVALETVRGNCAPATSKRARKEGALVFLSKKDPRAKRRFVDRLRENGLPTTGSLNALAARDREFVIRWNANLDAAVPQPKKRITDQLVADENHAARERENAAYVSIGTFFATKIAGDPQLPAE-GDGFDDLIQK 257          
BLAST of Ggra6267.t1 vs. uniprot
Match: A0A0G4INP6 (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4INP6_PLABS)

HSP 1 Score: 68.6 bits (166), Expect = 3.640e-9
Identity = 62/228 (27.19%), Postives = 99/228 (43.42%), Query Frame = 0
Query:   84 TELIESHSCLICHEILNAPVRLPCTHLFCSLCIRRHLSRSSTCPHPTCPTDCTTSDLDPLRHYDVTLEKLRIM-QRTSVPGLKRVQCSSLPLPGN---------LSRATLVNKLRSVGLQTIGTLETLQVRYREFVLRVNAASDSAFGAPKHKVLDQVRRYEEALSEPQRGLNGFSGRSAHQLVAQQGDSFEELV------RKTKRRKDLQTRASA-----SQDIPQR 290
            T L  +  C IC+  +  PV LPC+H +CS+CIRR LS   +CP   C      S + P R  +  +  L     +T +P  +R  C S+  P           +  +T+  +LR  GL   G    L  RY E+ +   A  D A   P  +V+ +  R + +     + +     +      ++Q D F+ L+      R  KR +D Q  AS+     S ++P+R
Sbjct:    7 TPLSAALQCPICYSAMTTPVILPCSHSYCSMCIRRWLSAKKSCP--VCSEQADPSQIIPNRALEHAIAVLTCEGNQTRLPQNQR--CPSMAQPRERLPRLAVAMVKDSTIRERLRRYGLSDKGARAELVRRYEEYEMAYEANQDKAVPDPVSRVVQRFNREDHSRPTLSQDVPASQTKLRG---SRQADPFQRLIAQAQQQRPAKRYRDRQPPASSEGGQPSTEVPER 227          
BLAST of Ggra6267.t1 vs. uniprot
Match: A0A0P1AK45 (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AK45_PLAHL)

HSP 1 Score: 65.5 bits (158), Expect = 8.440e-8
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 0
Query:   87 IESH-SCLICHEILNAPVRLPCTHLFCSLCIRRHL-SRSSTCPHPTCPTDCTTSDLDPLRHYDVTLEKLRIMQRTSVPGL-KRVQCSSLPLPGNLSRATLVNKLR 188
            +ESH  C IC +  + PV LPC+H FCS C+RR L S+ +    P+C   CT+ DL P R     LE++ ++  TS P L +R+QC+++P     +  T   K++
Sbjct:   25 MESHLRCQICGDYFHGPVLLPCSHTFCSACVRRFLQSKGAHGCCPSCKHPCTSRDLVPNR----ALEQVTLLFETSKPELLRRLQCTTVPSSATCTPTTEKGKIK 125          
BLAST of Ggra6267.t1 vs. uniprot
Match: A0A3M6VMQ4 (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VMQ4_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.450e-6
Identity = 71/248 (28.63%), Postives = 107/248 (43.15%), Query Frame = 0
Query:   92 CLICHEILNAPVRLPCTHLFCSLCIRRHL-SRSSTCPHPTCPTDCTTSDLDPLRHYDVTLEKLRIMQRTSVPGL-KRVQC-SSLPLPGNLSRATLVNKLRSVGLQTIGT------------------LETLQVR------------YREFVLRVNAASDSAFGAPKHKVLDQVRRYE----------EALSEPQRGL-NGFSGRSAHQLVAQQGDSFEELV-----RKTKRRKDLQTRASASQDIPQR 290
            C IC +  + PV LPC+H FCS C+RR L S+ +    P C   C T DL P R     LE++ ++   S P L KR+Q    LP     +  T   K++ +  Q I                    L+++ VR            ++EFVL  NA +DS       +V ++V R            +AL   Q G  NG +   A  + AQ   SF++L      RK+ +R    +  ++S + PQ+
Sbjct:   31 CQICGDFFHGPVLLPCSHTFCSTCVRRFLQSKGANGCCPQCKQPCDTRDLVPNR----ALEQVALLFEKSKPDLLKRLQGRKKLPSSAVSTPNTESGKVKKIKQQDIPERLPLLSYNVMRDKEVRKLLDSINVRVPIKNREEIIQIHKEFVLLSNAQADSVNPKSTAQVREEVVRNHHARMQQKAKTDALKRSQSGNDNGNAASPASGVSAQMRASFDKLRQDIADRKSGKRPPTPSTDTSSSNTPQK 274          
The following BLAST results are available for this feature:
BLAST of Ggra6267.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IME01.140e-7744.89Postreplication repair E3 ubiquitin-protein ligase... [more]
R7QTP73.060e-2538.19E3 ubiquitin ligase, putative n=1 Tax=Chondrus cri... [more]
A0A0G4INP63.640e-927.19Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A0P1AK458.440e-838.10RanBP-type and C3HC4-type zinc finger-containing p... [more]
A0A3M6VMQ42.450e-628.63RanBP-type and C3HC4-type zinc finger-containing p... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 92..134
e-value: 1.3E-4
score: 31.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 92..134
score: 10.807436
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 70..162
e-value: 2.7E-13
score: 51.1
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 92..127
e-value: 3.2E-6
score: 27.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 419..440
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 416..440
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 267..324
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 326..340
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 267..341
NoneNo IPR availablePANTHERPTHR14134:SF2E3 UBIQUITIN-PROTEIN LIGASE RAD18coord: 178..343
NoneNo IPR availablePANTHERPTHR14134:SF2E3 UBIQUITIN-PROTEIN LIGASE RAD18coord: 84..151
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 84..134
IPR039577E3 ubiquitin-protein ligase Rad18PANTHERPTHR14134E3 UBIQUITIN-PROTEIN LIGASE RAD18coord: 178..343
IPR039577E3 ubiquitin-protein ligase Rad18PANTHERPTHR14134E3 UBIQUITIN-PROTEIN LIGASE RAD18coord: 84..151
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 107..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:371952..373274 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6267.t1Ggra6267.t1Gracilaria gracilis GNS1m malemRNAtig00000879_pilon 371952..373274 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6267.t1 ID=Ggra6267.t1|Name=Ggra6267.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=441bp
MSRHRDAIATKHRDNFDVSYDVIVKGTGANFPGFAVSFSQPRVCAPDRSL
WAVPFVIMDSRSRSRSRPSSDENKLIQSLTFQMTELIESHSCLICHEILN
APVRLPCTHLFCSLCIRRHLSRSSTCPHPTCPTDCTTSDLDPLRHYDVTL
EKLRIMQRTSVPGLKRVQCSSLPLPGNLSRATLVNKLRSVGLQTIGTLET
LQVRYREFVLRVNAASDSAFGAPKHKVLDQVRRYEEALSEPQRGLNGFSG
RSAHQLVAQQGDSFEELVRKTKRRKDLQTRASASQDIPQRHEKERVEPAE
GDKKPDSGEESKDVKQDKPKLQGTSNPRKRPRSATAQSHSAEKAVDVHIV
NLPPTLVSCTEVALCSSGVNIQPGKYLPGQTPSSVQKLTQVTPPSASNPN
LTEEQIERMRRNKMAAMERRRQNSQQYVRRLPFNGTQETP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR027370Znf-RING_LisH
IPR039577Rad18
IPR017907Znf_RING_CS