Ggra6267.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6267.t1
Unique Name	Ggra6267.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	441

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000879_pilon	contig	tig00000879_pilon:371952..373274 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4792.ETI33885
PFAMs	zf-C3HC4
Max annot lvl	4776\|Peronosporales
KEGG ko	ko:K10627
Evalue	3.03e-06
EggNOG OGs	COG5432@1\|root,KOG0287@2759\|Eukaryota,3QDV4@4776\|Peronosporales
EC	2.3.2.27
Description	RING-type zinc-finger
COG category	O
BRITE	ko00000,ko01000,ko03400,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6267	Ggra6267	Gracilaria gracilis GNS1m male	gene	tig00000879_pilon 371952..373274 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6267.t1.start1	Ggra6267.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000879_pilon 371952..371954 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6267.t1.CDS1	Ggra6267.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000879_pilon 371952..373274 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6267.t1.exon1	Ggra6267.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000879_pilon 371952..373274 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6267.t1.stop1	Ggra6267.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000879_pilon 373272..373274 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6267.t1	Ggra6267.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000879_pilon 371952..373274 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000879_pilon:371952..373274+
coding sequence from alignment at tig00000879_pilon:371952..373274+

mRNA sequence

>Ggra6267.t1 ID=Ggra6267.t1|Name=Ggra6267.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp
MSRHRDAIATKHRDNFDVSYDVIVKGTGANFPGFAVSFSQPRVCAPDRSL
WAVPFVIMDSRSRSRSRPSSDENKLIQSLTFQMTELIESHSCLICHEILN
APVRLPCTHLFCSLCIRRHLSRSSTCPHPTCPTDCTTSDLDPLRHYDVTL
EKLRIMQRTSVPGLKRVQCSSLPLPGNLSRATLVNKLRSVGLQTIGTLET
LQVRYREFVLRVNAASDSAFGAPKHKVLDQVRRYEEALSEPQRGLNGFSG
RSAHQLVAQQGDSFEELVRKTKRRKDLQTRASASQDIPQRHEKERVEPAE
GDKKPDSGEESKDVKQDKPKLQGTSNPRKRPRSATAQSHSAEKAVDVHIV
NLPPTLVSCTEVALCSSGVNIQPGKYLPGQTPSSVQKLTQVTPPSASNPN
LTEEQIERMRRNKMAAMERRRQNSQQYVRRLPFNGTQETP*

spliced messenger RNA

>Ggra6267.t1 ID=Ggra6267.t1|Name=Ggra6267.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000879_pilon:371952..373274+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACGCCACCGTGATGCTATAGCTACGAAGCACCGTGACAATTTTGA
TGTATCTTATGATGTGATTGTCAAAGGCACTGGCGCCAATTTCCCGGGAT
TCGCCGTTTCGTTCTCTCAACCTCGCGTCTGCGCACCGGACCGTTCCCTT
TGGGCAGTTCCATTCGTCATCATGGACAGTCGTTCACGTTCACGCTCGCG
GCCGTCTTCGGATGAAAACAAGCTCATCCAGTCGCTCACGTTTCAGATGA
CCGAGCTCATCGAGTCGCACAGCTGCCTAATTTGTCACGAAATCCTAAAC
GCCCCTGTTCGCCTCCCGTGTACTCACCTTTTCTGCTCGCTGTGCATACG
GCGCCATCTCTCCCGCTCTTCTACCTGTCCTCATCCCACATGTCCCACGG
ACTGCACAACGTCTGACCTTGATCCCTTGCGTCATTATGACGTCACTCTG
GAGAAGCTTCGAATTATGCAACGCACTTCCGTACCCGGTCTTAAACGGGT
TCAATGCTCTTCGTTACCTTTACCGGGAAACCTTTCTCGCGCCACGCTCG
TGAATAAGTTGCGTTCCGTTGGATTGCAGACTATCGGCACTTTGGAAACT
TTACAAGTTCGTTATCGGGAATTCGTGCTTCGCGTCAATGCTGCGTCAGA
CTCTGCGTTCGGCGCTCCCAAACACAAAGTCTTAGATCAAGTGAGGCGAT
ATGAAGAGGCTCTTTCTGAACCGCAGCGAGGTTTGAATGGTTTCTCCGGA
CGCTCAGCACACCAACTTGTTGCTCAGCAGGGAGACAGTTTTGAAGAACT
GGTGCGGAAGACTAAACGACGAAAGGATTTGCAAACACGAGCGAGTGCAT
CGCAAGATATCCCGCAAAGACATGAGAAAGAACGTGTAGAGCCTGCTGAA
GGGGATAAGAAACCGGACAGCGGAGAAGAGAGCAAGGACGTGAAACAAGA
CAAGCCTAAGTTGCAAGGAACGAGTAATCCTCGAAAACGACCGCGCTCTG
CAACCGCTCAAAGCCACTCTGCGGAGAAGGCCGTTGACGTACACATTGTA
AATCTACCGCCTACGCTCGTTTCGTGTACTGAGGTCGCTCTCTGTTCTTC
TGGAGTGAACATTCAGCCAGGGAAGTATTTGCCCGGTCAAACCCCTTCAA
GTGTACAAAAGCTAACTCAGGTTACGCCACCTTCGGCTTCCAACCCCAAT
CTTACTGAGGAACAAATAGAAAGAATGCGTCGAAACAAAATGGCGGCGAT
GGAACGTAGACGACAAAACAGTCAGCAGTATGTGCGACGCTTGCCCTTCA
ACGGCACTCAAGAAACACCTTGA

protein sequence of Ggra6267.t1

>Ggra6267.t1 ID=Ggra6267.t1|Name=Ggra6267.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=441bp
MSRHRDAIATKHRDNFDVSYDVIVKGTGANFPGFAVSFSQPRVCAPDRSL
WAVPFVIMDSRSRSRSRPSSDENKLIQSLTFQMTELIESHSCLICHEILN
APVRLPCTHLFCSLCIRRHLSRSSTCPHPTCPTDCTTSDLDPLRHYDVTL
EKLRIMQRTSVPGLKRVQCSSLPLPGNLSRATLVNKLRSVGLQTIGTLET
LQVRYREFVLRVNAASDSAFGAPKHKVLDQVRRYEEALSEPQRGLNGFSG
RSAHQLVAQQGDSFEELVRKTKRRKDLQTRASASQDIPQRHEKERVEPAE
GDKKPDSGEESKDVKQDKPKLQGTSNPRKRPRSATAQSHSAEKAVDVHIV
NLPPTLVSCTEVALCSSGVNIQPGKYLPGQTPSSVQKLTQVTPPSASNPN
LTEEQIERMRRNKMAAMERRRQNSQQYVRRLPFNGTQETP*

mRNA from alignment at tig00000879_pilon:371952..373274+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6267.t1 ID=Ggra6267.t1|Name=Ggra6267.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000879_pilon:371952..373274+ (Gracilaria gracilis GNS1m male)
ATGTCACGCCACCGTGATGCTATAGCTACGAAGCACCGTGACAATTTTGA
TGTATCTTATGATGTGATTGTCAAAGGCACTGGCGCCAATTTCCCGGGAT
TCGCCGTTTCGTTCTCTCAACCTCGCGTCTGCGCACCGGACCGTTCCCTT
TGGGCAGTTCCATTCGTCATCATGGACAGTCGTTCACGTTCACGCTCGCG
GCCGTCTTCGGATGAAAACAAGCTCATCCAGTCGCTCACGTTTCAGATGA
CCGAGCTCATCGAGTCGCACAGCTGCCTAATTTGTCACGAAATCCTAAAC
GCCCCTGTTCGCCTCCCGTGTACTCACCTTTTCTGCTCGCTGTGCATACG
GCGCCATCTCTCCCGCTCTTCTACCTGTCCTCATCCCACATGTCCCACGG
ACTGCACAACGTCTGACCTTGATCCCTTGCGTCATTATGACGTCACTCTG
GAGAAGCTTCGAATTATGCAACGCACTTCCGTACCCGGTCTTAAACGGGT
TCAATGCTCTTCGTTACCTTTACCGGGAAACCTTTCTCGCGCCACGCTCG
TGAATAAGTTGCGTTCCGTTGGATTGCAGACTATCGGCACTTTGGAAACT
TTACAAGTTCGTTATCGGGAATTCGTGCTTCGCGTCAATGCTGCGTCAGA
CTCTGCGTTCGGCGCTCCCAAACACAAAGTCTTAGATCAAGTGAGGCGAT
ATGAAGAGGCTCTTTCTGAACCGCAGCGAGGTTTGAATGGTTTCTCCGGA
CGCTCAGCACACCAACTTGTTGCTCAGCAGGGAGACAGTTTTGAAGAACT
GGTGCGGAAGACTAAACGACGAAAGGATTTGCAAACACGAGCGAGTGCAT
CGCAAGATATCCCGCAAAGACATGAGAAAGAACGTGTAGAGCCTGCTGAA
GGGGATAAGAAACCGGACAGCGGAGAAGAGAGCAAGGACGTGAAACAAGA
CAAGCCTAAGTTGCAAGGAACGAGTAATCCTCGAAAACGACCGCGCTCTG
CAACCGCTCAAAGCCACTCTGCGGAGAAGGCCGTTGACGTACACATTGTA
AATCTACCGCCTACGCTCGTTTCGTGTACTGAGGTCGCTCTCTGTTCTTC
TGGAGTGAACATTCAGCCAGGGAAGTATTTGCCCGGTCAAACCCCTTCAA
GTGTACAAAAGCTAACTCAGGTTACGCCACCTTCGGCTTCCAACCCCAAT
CTTACTGAGGAACAAATAGAAAGAATGCGTCGAAACAAAATGGCGGCGAT
GGAACGTAGACGACAAAACAGTCAGCAGTATGTGCGACGCTTGCCCTTCA
ACGGCACTCAAGAAACACCTTGA

Coding sequence (CDS) from alignment at tig00000879_pilon:371952..373274+

>Ggra6267.t1 ID=Ggra6267.t1|Name=Ggra6267.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1323bp|location=Sequence derived from alignment at tig00000879_pilon:371952..373274+ (Gracilaria gracilis GNS1m male)
ATGTCACGCCACCGTGATGCTATAGCTACGAAGCACCGTGACAATTTTGA
TGTATCTTATGATGTGATTGTCAAAGGCACTGGCGCCAATTTCCCGGGAT
TCGCCGTTTCGTTCTCTCAACCTCGCGTCTGCGCACCGGACCGTTCCCTT
TGGGCAGTTCCATTCGTCATCATGGACAGTCGTTCACGTTCACGCTCGCG
GCCGTCTTCGGATGAAAACAAGCTCATCCAGTCGCTCACGTTTCAGATGA
CCGAGCTCATCGAGTCGCACAGCTGCCTAATTTGTCACGAAATCCTAAAC
GCCCCTGTTCGCCTCCCGTGTACTCACCTTTTCTGCTCGCTGTGCATACG
GCGCCATCTCTCCCGCTCTTCTACCTGTCCTCATCCCACATGTCCCACGG
ACTGCACAACGTCTGACCTTGATCCCTTGCGTCATTATGACGTCACTCTG
GAGAAGCTTCGAATTATGCAACGCACTTCCGTACCCGGTCTTAAACGGGT
TCAATGCTCTTCGTTACCTTTACCGGGAAACCTTTCTCGCGCCACGCTCG
TGAATAAGTTGCGTTCCGTTGGATTGCAGACTATCGGCACTTTGGAAACT
TTACAAGTTCGTTATCGGGAATTCGTGCTTCGCGTCAATGCTGCGTCAGA
CTCTGCGTTCGGCGCTCCCAAACACAAAGTCTTAGATCAAGTGAGGCGAT
ATGAAGAGGCTCTTTCTGAACCGCAGCGAGGTTTGAATGGTTTCTCCGGA
CGCTCAGCACACCAACTTGTTGCTCAGCAGGGAGACAGTTTTGAAGAACT
GGTGCGGAAGACTAAACGACGAAAGGATTTGCAAACACGAGCGAGTGCAT
CGCAAGATATCCCGCAAAGACATGAGAAAGAACGTGTAGAGCCTGCTGAA
GGGGATAAGAAACCGGACAGCGGAGAAGAGAGCAAGGACGTGAAACAAGA
CAAGCCTAAGTTGCAAGGAACGAGTAATCCTCGAAAACGACCGCGCTCTG
CAACCGCTCAAAGCCACTCTGCGGAGAAGGCCGTTGACGTACACATTGTA
AATCTACCGCCTACGCTCGTTTCGTGTACTGAGGTCGCTCTCTGTTCTTC
TGGAGTGAACATTCAGCCAGGGAAGTATTTGCCCGGTCAAACCCCTTCAA
GTGTACAAAAGCTAACTCAGGTTACGCCACCTTCGGCTTCCAACCCCAAT
CTTACTGAGGAACAAATAGAAAGAATGCGTCGAAACAAAATGGCGGCGAT
GGAACGTAGACGACAAAACAGTCAGCAGTATGTGCGACGCTTGCCCTTCA
ACGGCACTCAAGAAACACCTTGA