Ggra6260.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra6260.t1
Unique Name	Ggra6260.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	474

Homology

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BLAST of Ggra6260.t1 vs. uniprot
Match: A0A2V3IMA5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMA5_9FLOR)

HSP 1 Score: 74.7 bits (182), Expect = 1.250e-10
Identity = 147/586 (25.09%), Postives = 199/586 (33.96%), Query Frame = 0

Query:   11 PSPPNANAQSFHPMPDMHFPQITWEDLTAAIDLAKAAPPSNVPDLPLSSLFAP--PQPPSMGTQXXXXXXXXXXXXXQQPPQLRRDARHAAGGQPPCSPAVDANLKPQTATVRPPPHAEQPVRSIAAAQIAKQGARPKRKLKKQRRNPEPIHASKHRNTIPIAL-------------------------------------------------------------------DSLGDALLQQQQQQQ----HQAPVQQR---------------------------------------------AYQNYQASAQ-NARAQHGAPYWSSAPMALNVPELSAALQAAQQQAAQQHVLEANRAGMVPDMAADMRAVDAGDVACEARSQLLGMQGYTAYDSAAHVAAHNNLKVNGGIQKDQVRARDGADWRGRLA------------RNNTNDVSWLQGTPRAWGPGVRPQPHGSFQQMNHGAPERYAPGNMVMDRGMGAVGDGAHNRATVYNRGRGGHRNMGQRRGWQTWRGGRGRSTRR------RRGGPPGRRQPTRRAERPNAHDVRLSMTHGVFNLQNAVKQEGLV 459
            PSPP       HP   M  PQ+TW+D+TAAIDL+K APP  + DLPLSSLF    P PPS                 Q PP        ++  QP            Q    RP P +E P   I     AK     KRK KK RR+ EP  + ++  T P  +                                                                   D+ G  + QQQ  QQ     Q P Q R                                             A+ +YQ+  Q ++  Q    +W        + E+SAA+QAAQQQA+Q  +++ N A   P       A  A DV C + S+LLG    +  D +A    +  L     I+K   R+   +DWR                ++N + V WL+     WG  +  +  GSF      AP      ++V D+                      +R +  +R WQ  RG RG           R+G   GRR    R    N + + L MTHG     + VKQE  V
Sbjct:   10 PSPPE------HPHAGMPIPQLTWDDITAAIDLSKVAPPQAIHDLPLSSLFTSVQPLPPSQSNPIQ-----------QNPPA-------SSPAQPXXXXXXXXXXXXQQVAARPLPPSETPAYPIHNDAHAKPLPCQKRKPKKPRRHSEPP-SKQNPATPPTPILQSEPFDKPAQPSNASDPANLNNRNPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQPLQQHDAQGKHIHQQQPAQQLLRPQQHPFQHRFNDGQSNAPAVHLPPPVPAPTXXXXXXXXXXXXXXXXNLLPLLNAAFHDYQSGGQQSSHMQQNMTHWPYQLAGYGLSEISAAIQAAQQQASQ--LVKPNLAQQSPAQRPASPA--AKDVPCHSTSKLLG----STRDDSAKCRNNKRLPPAPHIRKRGARSSASSDWRKHSVPTTAXXXXXXTPQHNIDPVEWLRRAHAIWGAALHQRADGSFAPQ---APPPPVVRHIVADKNTQP------------------YRGLPPKRPWQPRRGNRGXXXXXXXXXXXRQGPGGGRRNHQWRPNDSNPYGLPLGMTHGPHRFHSFVKQESSV 541

The following BLAST results are available for this feature:

BLAST of Ggra6260.t1 vs. uniprot

BLAST of Ggra6260.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IMA5	1.250e-10	25.09	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 387..436
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 409..423
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000879_pilon	contig	tig00000879_pilon:353788..355575 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6260.t1	Ggra6260.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000879_pilon 353788..355575 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra6260.t1 ID=Ggra6260.t1|Name=Ggra6260.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=474bp
MSNPVNDTSRPSPPNANAQSFHPMPDMHFPQITWEDLTAAIDLAKAAPPS
NVPDLPLSSLFAPPQPPSMGTQPQPPTHKSATRPPQQPPQLRRDARHAAG
GQPPCSPAVDANLKPQTATVRPPPHAEQPVRSIAAAQIAKQGARPKRKLK
KQRRNPEPIHASKHRNTIPIALDSLGDALLQQQQQQQHQAPVQQRAYQNY
QASAQNARAQHGAPYWSSAPMALNVPELSAALQAAQQQAAQQHVLEANRA
GMVPDMAADMRAVDAGDVACEARSQLLGMQGYTAYDSAAHVAAHNNLKVN
GGIQKDQVRARDGADWRGRLARNNTNDVSWLQGTPRAWGPGVRPQPHGSF
QQMNHGAPERYAPGNMVMDRGMGAVGDGAHNRATVYNRGRGGHRNMGQRR
GWQTWRGGRGRSTRRRRGGPPGRRQPTRRAERPNAHDVRLSMTHGVFNLQ
NAVKQEGLVKAGVGVNGSGDVKS*