Ggra6260.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6260.t1
Unique NameGgra6260.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length474
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:353788..355575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6260Ggra6260Gracilaria gracilis GNS1m malegenetig00000879_pilon 353788..355575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6260.t1Ggra6260.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 353788..355575 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6260.t1.stop1Ggra6260.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 353788..353790 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6260.t1.CDS1Ggra6260.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 353788..354623 -
Ggra6260.t1.CDS2Ggra6260.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000879_pilon 354990..355575 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6260.t1.exon1Ggra6260.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 353788..354623 -
Ggra6260.t1.exon2Ggra6260.t1.exon2Gracilaria gracilis GNS1m maleexontig00000879_pilon 354990..355575 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6260.t1.intron1Ggra6260.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000879_pilon 354624..354989 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6260.t1.start1Ggra6260.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 355573..355575 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6260.t1 ID=Ggra6260.t1|Name=Ggra6260.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=474bp
MSNPVNDTSRPSPPNANAQSFHPMPDMHFPQITWEDLTAAIDLAKAAPPS
NVPDLPLSSLFAPPQPPSMGTQPQPPTHKSATRPPQQPPQLRRDARHAAG
GQPPCSPAVDANLKPQTATVRPPPHAEQPVRSIAAAQIAKQGARPKRKLK
KQRRNPEPIHASKHRNTIPIALDSLGDALLQQQQQQQHQAPVQQRAYQNY
QASAQNARAQHGAPYWSSAPMALNVPELSAALQAAQQQAAQQHVLEANRA
GMVPDMAADMRAVDAGDVACEARSQLLGMQGYTAYDSAAHVAAHNNLKVN
GGIQKDQVRARDGADWRGRLARNNTNDVSWLQGTPRAWGPGVRPQPHGSF
QQMNHGAPERYAPGNMVMDRGMGAVGDGAHNRATVYNRGRGGHRNMGQRR
GWQTWRGGRGRSTRRRRGGPPGRRQPTRRAERPNAHDVRLSMTHGVFNLQ
NAVKQEGLVKAGVGVNGSGDVKS*
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spliced messenger RNA

>Ggra6260.t1 ID=Ggra6260.t1|Name=Ggra6260.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000879_pilon:353788..355575- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAACCCCGTCAATGACACCAGTCGACCATCGCCGCCGAACGCGAA
CGCACAGTCATTTCACCCGATGCCCGACATGCACTTCCCGCAGATCACGT
GGGAAGATCTCACCGCCGCCATCGATCTCGCCAAGGCAGCGCCGCCTTCA
AACGTCCCCGACCTCCCTCTCTCCTCGCTCTTCGCCCCGCCGCAACCCCC
GTCAATGGGCACGCAACCGCAGCCGCCCACGCACAAGTCCGCGACGCGCC
CGCCGCAACAACCGCCGCAGCTACGCCGCGATGCTCGACACGCTGCGGGC
GGACAGCCGCCGTGCTCACCGGCTGTTGACGCCAACCTCAAACCGCAGAC
GGCTACCGTTCGGCCGCCGCCGCACGCGGAACAGCCGGTGCGTTCCATTG
CGGCCGCGCAGATCGCGAAGCAGGGCGCACGGCCGAAGCGCAAGCTGAAG
AAGCAGAGGCGCAACCCGGAGCCCATTCATGCTTCGAAGCACCGCAATAC
GATACCGATTGCTTTGGACTCGCTTGGAGACGCGCTGCTGCAGCAGCAGC
AACAACAACAACACCAAGCGCCCGTTCAACAACGTGCGTACCAGAACTAC
CAAGCAAGCGCGCAGAACGCCCGCGCTCAGCATGGCGCGCCGTACTGGTC
CTCTGCACCGATGGCTTTGAATGTTCCAGAGCTTTCTGCGGCTTTGCAGG
CCGCTCAGCAACAGGCGGCGCAGCAACACGTGCTCGAGGCGAACAGAGCG
GGTATGGTACCAGACATGGCGGCTGATATGCGCGCTGTGGACGCGGGCGA
TGTAGCGTGTGAGGCGCGGTCGCAGTTGTTGGGGATGCAGGGGTATACCG
CGTATGACAGCGCGGCGCATGTTGCTGCTCACAACAACTTGAAGGTGAAC
GGTGGGATTCAGAAGGATCAAGTTCGAGCAAGGGACGGCGCTGACTGGCG
GGGGCGACTGGCGCGCAATAATACAAACGACGTGTCGTGGTTGCAAGGCA
CTCCACGAGCGTGGGGACCGGGTGTGCGTCCGCAACCACATGGCAGCTTT
CAGCAGATGAACCATGGGGCTCCGGAGCGATATGCGCCTGGCAACATGGT
CATGGACAGAGGTATGGGAGCGGTGGGAGATGGGGCGCACAACCGAGCAA
CGGTGTACAATAGAGGGAGGGGCGGTCACAGAAATATGGGCCAGAGGAGA
GGGTGGCAGACGTGGAGGGGAGGTCGAGGCAGAAGCACTCGTAGAAGGAG
GGGTGGTCCCCCTGGCCGACGACAGCCCACACGCAGAGCTGAGCGTCCAA
ACGCGCACGACGTGCGACTGAGCATGACACACGGCGTGTTCAATCTGCAG
AACGCCGTGAAGCAAGAAGGCCTGGTCAAGGCGGGAGTCGGCGTGAATGG
CAGCGGAGATGTCAAGAGTTAG
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protein sequence of Ggra6260.t1

>Ggra6260.t1 ID=Ggra6260.t1|Name=Ggra6260.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=474bp
MSNPVNDTSRPSPPNANAQSFHPMPDMHFPQITWEDLTAAIDLAKAAPPS
NVPDLPLSSLFAPPQPPSMGTQPQPPTHKSATRPPQQPPQLRRDARHAAG
GQPPCSPAVDANLKPQTATVRPPPHAEQPVRSIAAAQIAKQGARPKRKLK
KQRRNPEPIHASKHRNTIPIALDSLGDALLQQQQQQQHQAPVQQRAYQNY
QASAQNARAQHGAPYWSSAPMALNVPELSAALQAAQQQAAQQHVLEANRA
GMVPDMAADMRAVDAGDVACEARSQLLGMQGYTAYDSAAHVAAHNNLKVN
GGIQKDQVRARDGADWRGRLARNNTNDVSWLQGTPRAWGPGVRPQPHGSF
QQMNHGAPERYAPGNMVMDRGMGAVGDGAHNRATVYNRGRGGHRNMGQRR
GWQTWRGGRGRSTRRRRGGPPGRRQPTRRAERPNAHDVRLSMTHGVFNLQ
NAVKQEGLVKAGVGVNGSGDVKS*
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mRNA from alignment at tig00000879_pilon:353788..355575-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6260.t1 ID=Ggra6260.t1|Name=Ggra6260.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1788bp|location=Sequence derived from alignment at tig00000879_pilon:353788..355575- (Gracilaria gracilis GNS1m male)
ATGTCCAACCCCGTCAATGACACCAGTCGACCATCGCCGCCGAACGCGAA
CGCACAGTCATTTCACCCGATGCCCGACATGCACTTCCCGCAGATCACGT
GGGAAGATCTCACCGCCGCCATCGATCTCGCCAAGGCAGCGCCGCCTTCA
AACGTCCCCGACCTCCCTCTCTCCTCGCTCTTCGCCCCGCCGCAACCCCC
GTCAATGGGCACGCAACCGCAGCCGCCCACGCACAAGTCCGCGACGCGCC
CGCCGCAACAACCGCCGCAGCTACGCCGCGATGCTCGACACGCTGCGGGC
GGACAGCCGCCGTGCTCACCGGCTGTTGACGCCAACCTCAAACCGCAGAC
GGCTACCGTTCGGCCGCCGCCGCACGCGGAACAGCCGGTGCGTTCCATTG
CGGCCGCGCAGATCGCGAAGCAGGGCGCACGGCCGAAGCGCAAGCTGAAG
AAGCAGAGGCGCAACCCGGAGCCCATTCATGCTTCGAAGCACCGCAATAC
GATACCGATTGCTTTGGACTCGCTTGGAGACGCGCTGCTGCAGCAGCAGC
AACAACAACAACACCAAGCGCCCGTTCAACAACGTGGTAACGATTCACAG
TGGCGAAAAGCACAGCCGCAGTCGCAGCAACAACCGCAGTCGCAACAGCA
GCCGCATCAGCCGCAGTTGCAGATGCATCCGCAGCAACCACCGCAGCCGC
AGTTGCAGGTGCATCCGCAGCAACCACCGCAGCCGCATTTGCAGGTGCAT
CCGCAGCAAAGCGTGCAGCATGCAGCAAAGGAGGACGTGTCATCGCAGCA
AGCACCGCCAGCAACAACGAACGCGACGGCGGCAAATGCTGAATACGCGC
CACCGCCACCGCCGCCGCCACCATCGTGTGAACCGACGCCGATCGCGCCA
ACAGCCGCTGCAGGCTTGCCGCCCGCACACCTTTTGCCCTTTCTCAACGC
AGCGTACCAGAACTACCAAGCAAGCGCGCAGAACGCCCGCGCTCAGCATG
GCGCGCCGTACTGGTCCTCTGCACCGATGGCTTTGAATGTTCCAGAGCTT
TCTGCGGCTTTGCAGGCCGCTCAGCAACAGGCGGCGCAGCAACACGTGCT
CGAGGCGAACAGAGCGGGTATGGTACCAGACATGGCGGCTGATATGCGCG
CTGTGGACGCGGGCGATGTAGCGTGTGAGGCGCGGTCGCAGTTGTTGGGG
ATGCAGGGGTATACCGCGTATGACAGCGCGGCGCATGTTGCTGCTCACAA
CAACTTGAAGGTGAACGGTGGGATTCAGAAGGATCAAGTTCGAGCAAGGG
ACGGCGCTGACTGGCGGGGGCGACTGGCGCGCAATAATACAAACGACGTG
TCGTGGTTGCAAGGCACTCCACGAGCGTGGGGACCGGGTGTGCGTCCGCA
ACCACATGGCAGCTTTCAGCAGATGAACCATGGGGCTCCGGAGCGATATG
CGCCTGGCAACATGGTCATGGACAGAGGTATGGGAGCGGTGGGAGATGGG
GCGCACAACCGAGCAACGGTGTACAATAGAGGGAGGGGCGGTCACAGAAA
TATGGGCCAGAGGAGAGGGTGGCAGACGTGGAGGGGAGGTCGAGGCAGAA
GCACTCGTAGAAGGAGGGGTGGTCCCCCTGGCCGACGACAGCCCACACGC
AGAGCTGAGCGTCCAAACGCGCACGACGTGCGACTGAGCATGACACACGG
CGTGTTCAATCTGCAGAACGCCGTGAAGCAAGAAGGCCTGGTCAAGGCGG
GAGTCGGCGTGAATGGCAGCGGAGATGTCAAGAGTTAG
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Coding sequence (CDS) from alignment at tig00000879_pilon:353788..355575-

>Ggra6260.t1 ID=Ggra6260.t1|Name=Ggra6260.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1422bp|location=Sequence derived from alignment at tig00000879_pilon:353788..355575- (Gracilaria gracilis GNS1m male)
ATGTCCAACCCCGTCAATGACACCAGTCGACCATCGCCGCCGAACGCGAA
CGCACAGTCATTTCACCCGATGCCCGACATGCACTTCCCGCAGATCACGT
GGGAAGATCTCACCGCCGCCATCGATCTCGCCAAGGCAGCGCCGCCTTCA
AACGTCCCCGACCTCCCTCTCTCCTCGCTCTTCGCCCCGCCGCAACCCCC
GTCAATGGGCACGCAACCGCAGCCGCCCACGCACAAGTCCGCGACGCGCC
CGCCGCAACAACCGCCGCAGCTACGCCGCGATGCTCGACACGCTGCGGGC
GGACAGCCGCCGTGCTCACCGGCTGTTGACGCCAACCTCAAACCGCAGAC
GGCTACCGTTCGGCCGCCGCCGCACGCGGAACAGCCGGTGCGTTCCATTG
CGGCCGCGCAGATCGCGAAGCAGGGCGCACGGCCGAAGCGCAAGCTGAAG
AAGCAGAGGCGCAACCCGGAGCCCATTCATGCTTCGAAGCACCGCAATAC
GATACCGATTGCTTTGGACTCGCTTGGAGACGCGCTGCTGCAGCAGCAGC
AACAACAACAACACCAAGCGCCCGTTCAACAACGTGCGTACCAGAACTAC
CAAGCAAGCGCGCAGAACGCCCGCGCTCAGCATGGCGCGCCGTACTGGTC
CTCTGCACCGATGGCTTTGAATGTTCCAGAGCTTTCTGCGGCTTTGCAGG
CCGCTCAGCAACAGGCGGCGCAGCAACACGTGCTCGAGGCGAACAGAGCG
GGTATGGTACCAGACATGGCGGCTGATATGCGCGCTGTGGACGCGGGCGA
TGTAGCGTGTGAGGCGCGGTCGCAGTTGTTGGGGATGCAGGGGTATACCG
CGTATGACAGCGCGGCGCATGTTGCTGCTCACAACAACTTGAAGGTGAAC
GGTGGGATTCAGAAGGATCAAGTTCGAGCAAGGGACGGCGCTGACTGGCG
GGGGCGACTGGCGCGCAATAATACAAACGACGTGTCGTGGTTGCAAGGCA
CTCCACGAGCGTGGGGACCGGGTGTGCGTCCGCAACCACATGGCAGCTTT
CAGCAGATGAACCATGGGGCTCCGGAGCGATATGCGCCTGGCAACATGGT
CATGGACAGAGGTATGGGAGCGGTGGGAGATGGGGCGCACAACCGAGCAA
CGGTGTACAATAGAGGGAGGGGCGGTCACAGAAATATGGGCCAGAGGAGA
GGGTGGCAGACGTGGAGGGGAGGTCGAGGCAGAAGCACTCGTAGAAGGAG
GGGTGGTCCCCCTGGCCGACGACAGCCCACACGCAGAGCTGAGCGTCCAA
ACGCGCACGACGTGCGACTGAGCATGACACACGGCGTGTTCAATCTGCAG
AACGCCGTGAAGCAAGAAGGCCTGGTCAAGGCGGGAGTCGGCGTGAATGG
CAGCGGAGATGTCAAGAGTTAG
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