Ggra6257.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6257.t1
Unique NameGgra6257.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length459
Homology
BLAST of Ggra6257.t1 vs. uniprot
Match: A0A2V3ILK4 (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILK4_9FLOR)

HSP 1 Score: 156 bits (395), Expect = 1.190e-39
Identity = 104/278 (37.41%), Postives = 140/278 (50.36%), Query Frame = 0
Query:   92 GCGIQRCDLPAGRGYRCGYITYEDGDTINIEQPAVGHVFSFKALVKNPPTLFEDIYFLSDATSSMALDMETAKEKLRDIVSKRLAAGETPFGGQTFLPSVELPSVT-RRFGIGIFRDETELENGFQNVQSMTDDTSSILSAIDSIEATGGSGGAEANLVALYKVATDESIGWREDSRKLVVYFGDFPGHEPSCVEGLTITRDTVIDAIIAKRIHIIAVNFGSDVTADNDDSKGFNSAAESFGCGVSEMSDSRQANEIAFKTAGETVSKTDQSDLVSSI 368
            G G  RC  P              G  I +E+  V   FSF+  +     L  DIY LSDAT SM   +   + +  +IV                       SVT   FGIG FRDE+EL NGF N+Q +T D +++ +AIDS+ A GG    EANLVAL++VATD SIGWR  SRK+++YFGD PGHEP+CV  + + RD VI A+ A  I ++AV+F            G +     FGC  +  +   Q   I+  T G  V  T Q+ L+ ++
Sbjct:   67 GGGNLRCSAPGPA------TNVPPGGDIVLERVRVLDQFSFQVNLNTTYPLQTDIYLLSDATGSMRTAIAEVRTRFSEIVEM-------------------FESVTDAHFGIGFFRDESELGNGFMNLQGITGDRAAVQTAIDSLVARGGGDRPEANLVALHQVATDSSIGWRPASRKILMYFGDNPGHEPTCVGSVPLDRDEVIKALNAMNITVVAVSFNP----------GLDGNPTVFGCSGAIPAGPGQGTAISTATGGVLVPNTQQTQLIEAL 309          
BLAST of Ggra6257.t1 vs. uniprot
Match: A0A2V3IVR2 (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVR2_9FLOR)

HSP 1 Score: 152 bits (383), Expect = 6.130e-38
Identity = 98/254 (38.58%), Postives = 134/254 (52.76%), Query Frame = 0
Query:  116 GDTINIEQPAVGHVFSFKALVKNPPTLFEDIYFLSDATSSMALDMETAKEKLRDIVSKRLAAGETPFGGQTFLPSVELPSVT-RRFGIGIFRDETELENGFQNVQSMTDDTSSILSAIDSIEATGGSGGAEANLVALYKVATDESIGWREDSRKLVVYFGDFPGHEPSCVEGLTITRDTVIDAIIAKRIHIIAVNFGSDVTADNDDSKGFNSAAESFGCGVSEMSDSRQANEIAFKTAGETVSKTDQSDLVSSI 368
            G  I +E+  V   FSF+  +     L  DIY LSDAT SM   +   + +  +IV                       SVT   FGIG FRDE++  NGF N+Q +T D +++ +AID++ A GG    EANLVAL+KVATD SIGWR  SRK+V+YFGD PGHEP+CV  L + RD VI+A+ A +I ++AV+F            G +     F C     +   Q   I+  T G  V  T Q+ L+ ++
Sbjct:   85 GGDIVLERVRVLDQFSFQVNLNTASPLQTDIYLLSDATGSMRTAIAEVRTRFSEIVEM-------------------FESVTDAHFGIGFFRDESDPGNGFINLQGITGDRAAVQTAIDTLVARGGGDRPEANLVALHKVATDSSIGWRPASRKIVMYFGDNPGHEPTCVGSLQLDRDDVIEALNAMKITVVAVSFNP----------GLDGNPTVFSCRRVPPAGRGQGTAISTATGGVLVPNTQQTQLIEAL 309          
BLAST of Ggra6257.t1 vs. uniprot
Match: R7QAK7 (VWFA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAK7_CHOCR)

HSP 1 Score: 124 bits (312), Expect = 9.330e-28
Identity = 100/314 (31.85%), Postives = 151/314 (48.09%), Query Frame = 0
Query:   92 GCGIQRCDLPAGRGYRCGYITYEDGDTINI---EQPA-VGHVFSFKALVKNPPTL---------------FEDIYFLSDATSSMALDMETAKEKLRDIV-SKRLAAGETPFGGQTFLPSVELPSVTRRFGIGIFRDETELENGFQNVQSMTDDTSSILSAIDSIEATGGSGGAEANLVALYKVATDESIGWREDSRKLVVYFGDFPGHEPSC-VEGLTITRDTVIDAIIAKRIHIIAVNFGSDVTADNDDSKGFNSAAES-----FGC-GVSEMSDSRQANEIAFKTAGET--VSKTDQSDLVSSIYLYMSSSP 376
            GC +  C+     G+ CG           I   E P  V  +  F   ++   T+                ED Y LSDAT SMA ++   +E    +V ++R A+G+  FG                  +G +RDE ++   F+N+QS+T +   + +AI S+ A  G    EANL A+ +VAT+ SIGWR+ SRK++VYFGD PGHEP+C  + + +TRD V+D +    I ++A NF +  T      +G N+A  S     FGC G    S S QA+ I   T G    ++ +D   L+  I   +++ P
Sbjct:   60 GCAVIPCERSGRTGFTCGVAPTPTPSPSQIPISEGPIMVPTILQFPPEIEIGGTINVTIEVTVDDLSSSTMEDFYLLSDATGSMAEEITEVQENFDMLVDARRNASGDVAFG------------------VGFYRDEEDIPP-FENLQSLTTNLGLVDTAIASLNAVDGGDIPEANLFAISEVATNPSIGWRDGSRKILVYFGDAPGHEPTCPADSVPLTRDVVVDQLNEIGIAVVATNFAASNT------EGLNAATTSATGTNFGCPGPVVNSPSGQADAITSGTLGSIRRIADSDAGSLIDQILDAVTALP 348          
BLAST of Ggra6257.t1 vs. uniprot
Match: A0A1X6P9A4 (VWFA domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P9A4_PORUM)

HSP 1 Score: 122 bits (307), Expect = 2.290e-27
Identity = 73/182 (40.11%), Postives = 104/182 (57.14%), Query Frame = 0
Query:  144 EDIYFLSDATSSMALDMETAKEKLRDIVS-KRLAAGETPFGGQTFLPSVELPSVTRRFGIGIFRDETELENGFQNVQSMTDDTSSILSAIDSIEATGGSGGAEANLVALYKVATDESIGWREDSRKLVVYFGDFPGHEPSC-VEGLTITRDTVIDAIIAKRIHIIAVNFGSDVTADNDDSKG 323
            ED+  +SD T SM   +ET + +L D++S +R  AG+T                  RFG+  +RDE E    FQ  Q +TD+ +++  AID +   GG    EANL AL+ VATD+ +GW   SR+LV++FGD PGHEPSC V G+  TR +V+ A+ A RI +IA+   + +    D  KG
Sbjct:   83 EDVMLMSDTTGSMGEALETVQTQLSDLISARRKVAGDT------------------RFGVASYRDEKEYS--FQLHQPLTDEDAAVQRAIDRLSHGGGGDAPEANLPALHAVATDKRVGWSPGSRRLVIWFGDVPGHEPSCAVRGVRHTRQSVLAALRAARISVIAIGVNNGLNKGMDIRKG 244          
BLAST of Ggra6257.t1 vs. uniprot
Match: A0A1X6NSC1 (VWFA domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NSC1_PORUM)

HSP 1 Score: 108 bits (270), Expect = 2.670e-22
Identity = 64/169 (37.87%), Postives = 99/169 (58.58%), Query Frame = 0
Query:  144 EDIYFLSDATSSMALDMETAKEKLRDIVSKRLAAGETPFGGQTFLPSVELPSVTRRFGIGIFRDETELENGFQNVQSMTDDTSSILSAIDS--IEATGGSGGAEANLVALYKVATDESIGWREDSRKLVVYFGDFPGHEPSC-VEGLTITRDTVIDAIIAKRIHIIAVN 309
            +D+  L+D T SM   + T ++++  +++ R A                  S T RFG+  +RDE+E   GF+  Q +T +  ++ +A+DS  + A+GG    EANLVAL+ +ATD  +GW  D+R+LV +FGD PGHEPSC   G+  TR +V+ A+ A RI +I V+
Sbjct:   95 DDLMLLTDVTGSMRSAIATVRKEMTALMNARGAV-----------------STTVRFGVASYRDESEF--GFRLNQPLTANRRAVQTAVDSADLNASGGGDALEANLVALHALATDARVGWSSDARRLVAWFGDVPGHEPSCPAPGVRHTRSSVLAALRAARISVIGVS 244          
BLAST of Ggra6257.t1 vs. uniprot
Match: A0A1X6NRI8 (VWFA domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NRI8_PORUM)

HSP 1 Score: 104 bits (259), Expect = 7.580e-21
Identity = 62/169 (36.69%), Postives = 95/169 (56.21%), Query Frame = 0
Query:  144 EDIYFLSDATSSMALDMETAKEKLRDIVSKRLAAGETPFGGQTFLPSVELPSVTRRFGIGIFRDETELENGFQNVQSMTDDTSSILSAIDS--IEATGGSGGAEANLVALYKVATDESIGWREDSRKLVVYFGDFPGHEPSC-VEGLTITRDTVIDAIIAKRIHIIAVN 309
            +D+  L+D T SM   + T + ++  ++  R    +T                  RFG+  +RDE+E   GF+  Q +T +  ++ +A+DS  + A GG    EANLVAL+ +ATD S+GW   +R+LV +FGD PGHEPSC   G+  TR +V+ A+ A RI +I V+
Sbjct:   93 DDLMLLTDVTGSMGSAIATVRAEMAALMDARGTVSDT------------------RFGVASYRDESEF--GFRLNQPLTANRVAVQAAVDSPDLNAAGGGDALEANLVALHALATDASVGWSPGARRLVAWFGDVPGHEPSCPAPGVRHTRSSVLAALRAARISVIGVS 241          
BLAST of Ggra6257.t1 vs. uniprot
Match: A0A1X6NTH1 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTH1_PORUM)

HSP 1 Score: 97.1 bits (240), Expect = 1.290e-19
Identity = 60/164 (36.59%), Postives = 92/164 (56.10%), Query Frame = 0
Query:  149 LSDATSSMALDMETAKEKLRDIVSKRLAAGETPFGGQTFLPSVELPSVTRRFGIGIFRDETELENGFQNVQSMTDDTSSILSAIDS--IEATGGSGGAEANLVALYKVATDESIGWREDSRKLVVYFGDFPGHEPSC-VEGLTITRDTVIDAIIAKRIHIIAVN 309
            L+D T SM   + T + ++  ++  R A                  S T RFG+  +RDE+E   GF+  Q +T + +++ +A+DS  + A+GG    EANLVAL+ +ATD  + W  D+ +LV +FGD PGHEPSC   G+   R +V+ A+ A RI +I V+
Sbjct:    3 LTDVTGSMGSAIATVRAEMTALMDARGAV-----------------STTARFGVASYRDESEF--GFRLNQPLTANCTAVQTAVDSADLHASGGEDALEANLVALHALATDARVRWSPDAWRLVAWFGDVPGHEPSCPAPGVRHMRSSVLAALRAARISVIGVS 147          
BLAST of Ggra6257.t1 vs. uniprot
Match: A0A1X6PIV9 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PIV9_PORUM)

HSP 1 Score: 98.6 bits (244), Expect = 1.920e-19
Identity = 50/114 (43.86%), Postives = 77/114 (67.54%), Query Frame = 0
Query:  200 FGIGIFRDETELENGFQNVQSMTDDTSSILSAIDSIEATGGSGGAEANLVALYKVAT--DESIGWREDSRKLVVYFGDFPGHEPSCVEG--LTITRDTVIDAIIAKRIHIIAVN 309
            FG+G +RDE +   G+   Q +T D +++ +A+   EATGG+   EANLVALY++AT  D +IGWR+ +R++V +FGD PGHEPSC++G    +TR+ V   +    I ++AV+
Sbjct:   28 FGVGSYRDEADPNTGWILDQRVTGDLAAVRAAVGGFEATGGADAPEANLVALYRLATLPDAAIGWRDGARRVVAWFGDQPGHEPSCIDGGRTRLTRELVAARLRDAFITVVAVS 141          
BLAST of Ggra6257.t1 vs. uniprot
Match: A0A518D266 (Integrin, beta chain n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518D266_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 8.380e-15
Identity = 70/223 (31.39%), Postives = 115/223 (51.57%), Query Frame = 0
Query:  127 GHVFSFKALVKNP--PTLFE-DIYFLSDATSSMALDMETAKEKLRDIVSKRLAAGETPFGGQTFLPSVELPSVTRRFGIGIFRD---ETELENGFQNVQSMTDDTSSILSAIDSIEATGGSGGAEANLVALYKVATDE--SIGWREDSRKLVVYFGDFPGHEPSCVE--GLT--ITRDTVIDAIIAKRI---HIIAVNFGSDVTAD-NDDSKGFNSAAESFGC 333
            G   SF+A+VK P  P   + DIYFL+D T SM   ++  K+ +  + +   +                +P    R G+G +RD   + + +  F++ QSMT+D   I SA+DS  A  G   AEA   AL  +AT    + GWR+++++++V+FGD P H+P C +  GL+  IT  +VI A+    +    +IA++  +++    ND+  G N+   S  C
Sbjct:   62 GEATSFQAVVKVPGIPVAPKADIYFLADTTGSMTPVLDALKQNVGALATSLFS----------------IPGADLRIGVGAYRDFPLQPQNQYAFEHRQSMTNDLGLIQSAVDSWVAQFGGDQAEAGFYALEMLATQPPANFGWRDNTQRIIVWFGDAPSHDPVCKQLTGLSEDITEASVIAALAGAGVGGTRVIAISAPTNLPMGLNDNPTGANATGYSSLC 268          
BLAST of Ggra6257.t1 vs. uniprot
Match: A0A2U2YXJ0 (VWFA domain-containing protein n=1 Tax=Streptomyces sp. NWU339 TaxID=2185284 RepID=A0A2U2YXJ0_9ACTN)

HSP 1 Score: 84.7 bits (208), Expect = 6.210e-14
Identity = 56/172 (32.56%), Postives = 92/172 (53.49%), Query Frame = 0
Query:  145 DIYFLSDATSSMALDMETAKEKLRDIVSKRLAAGETPFGGQTFLPSVELPSVTRRFGIGIFRDETELENG-FQNVQSMTDDTSSILSAIDSIEATGGSGGAEANLVALYKVAT--DESIGWREDSRKLVVYFGDFPGHEPSC--VEGLT--ITRDTVIDAIIAKRIHIIAVN 309
            D+YFL+D+T SM   +   K    DI+ K LA      G               ++G+G +RD    E+  F +  SMT+DT+++ +AI S    GG    E    AL ++A    +S+GWR D+++++++FGD PGH+P C  V GL+  +T D+V   +    I ++A++
Sbjct:   40 DVYFLADSTGSMTPVINAVKAGADDILGK-LAQEAAAVGADI------------KYGVGNYRDFVPDESYCFAHQLSMTNDTNAVKTAITSWSTGGGGDTPEGQFYALDQIAQAPGQSVGWRADAKRIIIWFGDAPGHDPICTAVSGLSYAVTEDSVTQKLKGYGIFVLAIS 198          
The following BLAST results are available for this feature:
BLAST of Ggra6257.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ILK41.190e-3937.41VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IVR26.130e-3838.58VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
R7QAK79.330e-2831.85VWFA domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A1X6P9A42.290e-2740.11VWFA domain-containing protein n=1 Tax=Porphyra um... [more]
A0A1X6NSC12.670e-2237.87VWFA domain-containing protein n=1 Tax=Porphyra um... [more]
A0A1X6NRI87.580e-2136.69VWFA domain-containing protein n=1 Tax=Porphyra um... [more]
A0A1X6NTH11.290e-1936.59Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1X6PIV91.920e-1943.86Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A518D2668.380e-1531.39Integrin, beta chain n=1 Tax=Planctomycetes bacter... [more]
A0A2U2YXJ06.210e-1432.56VWFA domain-containing protein n=1 Tax=Streptomyce... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 145..343
e-value: 0.0014
score: 27.9
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 145..372
score: 10.728349
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 144..294
e-value: 5.7E-21
score: 77.4
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 145..279
IPR002369Integrin beta subunit, VWA domainPFAMPF00362Integrin_betacoord: 145..276
e-value: 2.0E-7
score: 31.0
NoneNo IPR availableCDDcd00198vWFAcoord: 145..320
e-value: 6.63939E-5
score: 41.3974

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:339648..345280 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6257.t1Ggra6257.t1Gracilaria gracilis GNS1m malemRNAtig00000879_pilon 339648..345280 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6257.t1 ID=Ggra6257.t1|Name=Ggra6257.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=459bp
MVKKGTRKACKGLTSLGCNFEKCETSEGEKGWTCVGGNPDDSGDSDDPGD
LEECPATCRSNREEVENERGACHFDENDALKDCNYDTSGFYGCGIQRCDL
PAGRGYRCGYITYEDGDTINIEQPAVGHVFSFKALVKNPPTLFEDIYFLS
DATSSMALDMETAKEKLRDIVSKRLAAGETPFGGQTFLPSVELPSVTRRF
GIGIFRDETELENGFQNVQSMTDDTSSILSAIDSIEATGGSGGAEANLVA
LYKVATDESIGWREDSRKLVVYFGDFPGHEPSCVEGLTITRDTVIDAIIA
KRIHIIAVNFGSDVTADNDDSKGFNSAAESFGCGVSEMSDSRQANEIAFK
TAGETVSKTDQSDLVSSIYLYMSSSPNGIRPTKSCEPYLQGPELSSSSWS
FGNIETLRFEQFTVTSQMCDLPTTSLECKYEYTIDYSPTARSKVVAVINV
KVDNVQGC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf
IPR002369Integrin_bsu_VWA