Ggra6253.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6253.t1
Unique NameGgra6253.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length476
Homology
BLAST of Ggra6253.t1 vs. uniprot
Match: A0A2V3J0V9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0V9_9FLOR)

HSP 1 Score: 276 bits (707), Expect = 3.310e-84
Identity = 180/480 (37.50%), Postives = 263/480 (54.79%), Query Frame = 0
Query:    7 GIDVTPKSTLSTIQFENEALNTVVTSLLTTLVIANLGSIINRLVMLSRSDVFSYRAFARSYVFLNSDDPLRLWYWFRGCYDF----RPANQSPTRY-----RIFRRHLIAPLFARLCILVVSIGSIALALPSEKRLDGCSGGDYTVVQSPLRRRPDVSPAEVL-QVCTEIPLETHLGTVRSSASYCSYPVTPGDIPVLASLSSANEDVQASFVGVSYTNSSGLLLSLIFSGDRIEAIVSFVRWETE-NGNRYNSLLPLWNDELHLNVIGEALGFSTNQDCNVTSLSSSSDKNDGTTLNVGVVGC--AFDASDAIRFVSAAMRESLSFRKEEGVALRAQLRN-ESTFEVDRMCAVDVAVTLPLINIIPLVIVLASAFCLNVGIMLIVSRHGNAMDSAFHIVREVLGHDTGANPLQVSTTDEGVEAVALKKYVCADDVSCHVGFVQGQGDFPVEEFYGGRNVSRCLQVACRGPRFVSELSDK 472
            G+D TP  T+STIQFENE +NTV TSL+   ++ NLGSIINRLV +S    F+YR+F R+++F++SDD  RL YW++G   +     P      R      R+ RR L+ P+ AR+ ++V SI SIAL +P +K    C   DY      +       P  VL ++C +IP+ T  G V S  SYCS  V P D   L       E+  A   G  Y    GLL+S      R   ++SFV W+   NGN Y S +  W+ E HL V  E +    N+ C + S  + S +  G TL  G++ C  A D       V+ A+R+SL + K      R++L   E      R C V ++V  P++NI+PL++ L   + LN  +   VS  G+ MD+ F +V+E LGHD  +NPL+ S  ++ V+ + L+++ CAD  S H+GF++G+GD  VEEF  G+ V +C Q   +GPR V E++++
Sbjct:    6 GVDYTPLLTISTIQFENEVVNTVATSLIVVFLLTNLGSIINRLVFISDKTQFNYRSFLRAFIFMHSDDITRLAYWWKGKNPYLSLLNPGGSGGGRAQRMLNRVQRRRLLLPVCARILLVVSSIASIALTIPGKKTFSSCGRADYEPQMGSVSPNFSEEPGGVLTRLCRDIPINTKRGDVSSKVSYCS-TVLPLDTNALF------EESTAVIAG--YWEQGGLLISGYTVNGRSNLVLSFVEWQRGVNGNIYRSHIRQWSPERHLGVCAEGISRDRNRACTIQSTRNDSIQGVGVTL--GLLSCDDAPDLQSGSSLVAGAVRDSLGWVKFRSTIQRSKLTGGEFRIPQQRECPVVISVERPVVNIVPLLVALVMMYTLNYAVNETVSHKGDIMDALFLLVKETLGHDCTSNPLEDSGGEKEVDVLQLQRFECADGRSAHIGFLRGRGDRVVEEFSDGKLVHQCYQTRAQGPR-VPEVAER 473          
BLAST of Ggra6253.t1 vs. uniprot
Match: R7QQN3 (Uncharacterized protein n=3 Tax=Chondrus crispus TaxID=2769 RepID=R7QQN3_CHOCR)

HSP 1 Score: 236 bits (602), Expect = 5.280e-68
Identity = 160/462 (34.63%), Postives = 241/462 (52.16%), Query Frame = 0
Query:    8 IDVTPKSTLSTIQFENEALNTVVTSLLTTLVIANLGSIINRLVMLSRSDVFSYRAFARSYVFLNSDDPLRLWYWFRGCYDFRPANQSPTRYRIFRRHLIAPLFARLCILVVSIGSIALALPSEKRLDGCSGGDYTVVQSPLRRRPDVSPAEVLQVCTEIPLETHLGTVRSSASYCSYPVTPGDIPVLASLSSANEDVQASFVG-VSYTNSSGLLLSLIFSGDRIEAIVSFVRWETENGNRYNSLLPLWND------ELHLNVIGEALGFSTNQDCNVTSLSSSSDKNDGTTL-NVGVVGCAFDASDAIRFVSAAMRESLSFRKEEGVALRAQLR-NESTFEVDRM--CAVDVAVTLPLINIIPLVIVLASAFCLNVGIMLIVSRHGNAMDSAFHIVREVLGHDTGANPLQVSTTDEGVEAVALKKYVCADDVSCHVGFVQGQGDFPVEEFYGGRNVSRCLQV 458
            ++ TP  + ST+Q  ++ +N ++ SLLT  VI+N+ S+ ++L+  SR   F Y ++ RS++F+NSDDP+R++ W    Y ++    +  R  I  R L+ PL ARL ILV +I S+A+++PSEKRL GC  GD+ +   P  R+P     ++ +VC +IPL T LG VRS  SYCS  V  G          +N  V     G V+ T  SG L + + S ++  A   +++W      R N    L+ +      + HL VI  AL   T Q C     S      D + +    ++ C FD    I  V A +  SL+  K     +  +L  N  T EV     C +DV V+ P++NI+PL ++L     +NV + +  SR GNA D  FHI++E LGHDT +NPL+ ++       + L+K+ C    + H GF+   GD PV+ F    NV  C QV
Sbjct:    7 LNATPDFSFSTVQTSSDIINALIISLLTVFVISNILSVTSKLIFSSREKSFEYLSWVRSFIFVNSDDPIRIFSWIWHRYSYKEKGCTRYRNEIQLRRLLLPLLARLFILVTAITSVAISIPSEKRLSGCEKGDFRIHMDPNVRKP---APDLNRVCADIPLTTTLGEVRSRVSYCSCLVDFG----------SNVPVSEGEGGIVTITTESGQLWTALVSKNKTAASAFYIQWVKNRRQRDNDKSLLFTNVEKIDSDDHLQVIANALRSETVQQCTAKGTSDKLPSEDNSLIAKAQILDCDFDPLSLIARVQAYVTGSLTLNKLRRGEMDNRLELNPLTDEVRETAACPIDVVVSRPIVNILPLALMLVLWGIINVLVSIYTSRRGNAFDMGFHIIKEALGHDTTSNPLEENSNRGEAMELPLRKWRCGAGAA-HEGFIGRDGDVPVQGFDSFTNVCGCTQV 454          
BLAST of Ggra6253.t1 vs. uniprot
Match: A0A2V3II47 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II47_9FLOR)

HSP 1 Score: 199 bits (505), Expect = 3.310e-55
Identity = 145/464 (31.25%), Postives = 228/464 (49.14%), Query Frame = 0
Query:    4 VTDGIDVTPKSTLSTIQFENEALNTVVTSLLTTLVIANLGSIINRLVMLSRSDVFSYRAFARSYVFLNSDDPLRLWYWFRGCYDFRPANQSPTRYRIFRRHLIAPLFARLCILVVSIGSIALALPSEKRLDGCSGGDYTVVQSPLRRRPDVSPAEVLQVCTEIPLETHLGTVRSSASYCSYPVTPGDIPVLASLSSANEDVQASFVGVSYTNSSGLLLSLIFSGDRIEAIVSFVRWETENGNRYNSLLPLWNDELHLNVIGEALGFSTNQDCNVTSLSSSSDKNDGTTLNVGVVGCAFDASDAIRFVSAAMRESLSFRKEEGVALR-AQLRNESTFEVDRMCAVDVAVTLPLINIIPLVIVLASAFCLNVGIMLIVSRHGNAMDSAFHIVREVLGHDTGANPLQVSTTDEGVEAVALKKYVCADDVSCHVGFVQGQGDFPVEEFYGGRNVSRCLQVACRGPRFV 466
            + +G+   P  TLSTIQF ++ LN++V +L+TT++IAN  SI+N+LV +S+ DVFS+ ++ R++VF NSDDP   +   RG Y F   N S T+ ++ ++ LI PLFAR                           D+  V         VS  E L+V                         PG       L  A +D++            G L S++ S  ++  +   V+W   NG+ ++S +  +   +HL V+ +A+   T   C +  +   SD  +G  +    + CAF        +  AM +SL F+++E VALR  +  N S+    R CA ++ +  PL+N+I LVI   +AF +N     ++S   +     FH+VRE+LGHDT ANPLQ     E  + V ++++VC ++ S HV F++G GD  V+     R+V+ C Q+AC G R V
Sbjct:   24 IEEGLKFNPNLTLSTIQFSSDNLNSIVAALITTIIIANPQSIVNKLVAVSKQDVFSFNSYRRAFVFANSDDPSLGFSCLRGRYGFGFGNGSHTQLKLRKKLLIVPLFARY-------------------------SDFAKV---------VSKTEELRV-------------------------PG-------LLMAGQDLKI-----------GALFSVLVSCKKVVVLGFGVKWAMPNGDVFHSKVSNYESYVHLGVLADAVRQPTKSTCEIRRVEPISDSANGVFM--ASLDCAFPPEKEFSTLLVAMTKSLHFQEQEEVALRHRRFANGSSVMDSRTCAAEITINRPLMNLILLVIGAVAAFAVNKTTAALLSCRADVTHLGFHMVRELLGHDTRANPLQHGKEQEQDQRVTIRRFVCINEESAHVCFMEGDGDRVVQHLEDSRHVACCSQIACVGRRLV 408          
BLAST of Ggra6253.t1 vs. uniprot
Match: R7QI75 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QI75_CHOCR)

HSP 1 Score: 150 bits (378), Expect = 3.600e-38
Identity = 99/281 (35.23%), Postives = 149/281 (53.02%), Query Frame = 0
Query:    8 IDVTPKSTLSTIQFENEALNTVVTSLLTTLVIANLGSIINRLVMLSRSDVFSYRAFARSYVFLNSDDPLRLWYWFRGCYDFRPANQSPTRYRIFRRHLIAPLFARLCILVVSIGSIALALPSEKRLDGCSGGDYTVVQSPLRRRPDVSPAEVLQVCTEIPLETHLGTVRSSASYCSYPVTPGDIPVLASLSSANEDVQASFVG-VSYTNSSGLLLSLIFSGDRIEAIVSFVRWETENGNRYNSLLPLWND------ELHLNVIGEALGFSTNQDCNVTSLS 281
            ++ TP  + ST+Q  ++ +N ++ SLLT  VI+N+ S+ ++L+  SR   F Y ++ RS++F+NSDDP+R++ W    Y ++    +  R  I  R L+ PL ARL ILV +I S+A+++PSEKRL GC  GD+ +   P  R+P     ++ +VC +IPL T LG VRS  SYCS  V  G          +N  V     G V+ T  SG L + + S +   A   +++W      R N    L+ +      + HL VI  AL   T Q C     S
Sbjct:    7 LNATPDFSFSTVQTSSDIINALIISLLTVFVISNILSVTSKLIFSSREKSFEYLSWVRSFIFVNSDDPIRIFSWIWHRYSYKEKGCTRYRNEIQLRRLLLPLLARLFILVTAITSVAISIPSEKRLSGCEKGDFRIHMDPNVRKP---APDLNRVCADIPLTTTLGEVRSRVSYCSCLVDFG----------SNVPVSEGEGGIVTITTESGQLWTALVSKNNTAASAFYIQWVKNRRQRDNDKSLLFTNVEKIDSDDHLQVIANALRSETVQQCTAKGTS 274          
BLAST of Ggra6253.t1 vs. uniprot
Match: A0A2V3II31 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II31_9FLOR)

HSP 1 Score: 139 bits (350), Expect = 4.150e-34
Identity = 82/250 (32.80%), Postives = 134/250 (53.60%), Query Frame = 0
Query:  218 GLLLSLIFSGDRIEAIVSFVRWETENGNRYNSLLPLWNDELHLNVIGEALGFSTNQDCNVTSLSSSSDKNDGTTLNVGVVGCAFDASDAIRFVSAAMRESLSFRKEEGVALRAQ-LRNESTFEVDRMCAVDVAVTLPLINIIPLVIVLASAFCLNVGIMLIVSRHGNAMDSAFHIVREVLGHDTGANPLQVSTTDEGVEAVALKKYVCADDVSCHVGFVQGQGDFPVEEFYGGRNVSRCLQVACRGPRFV 466
            G L S++ S  ++  +   V+W   NG+ ++S +  +   +HL V+ +A+    N  C +  +   SD  +G  +    + CAF     +  V  A+ +SL  +++E VALR +   N S+    R  A ++ +  PL+N+I LVI   +AF +N     ++S   +     FH+VRE+LGHDT ANPLQ     E  + V ++++VC +  S HVGF++G GD  V+     R+V+ C Q+AC G R V
Sbjct:   38 GALFSVLVSSKKVVVLGFGVKWAMPNGDVFHSKVSNYESYVHLGVLADAVRQPNNSTCEIRRVEPISDSANGVVM--ASLDCAFPPEKVLNTVLVAVTKSLHLQEQEEVALRHRTFANGSSVMDSRTWAAEITIKRPLMNLILLVIGAVAAFAVNKTTAALLSSRADVTHLGFHMVRELLGHDTRANPLQHGKEQEQDQRVTMQRFVCINGESAHVGFMEGDGDRVVQHLENIRHVACCSQIACEGRRLV 285          
The following BLAST results are available for this feature:
BLAST of Ggra6253.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J0V93.310e-8437.50Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QQN35.280e-6834.63Uncharacterized protein n=3 Tax=Chondrus crispus T... [more]
A0A2V3II473.310e-5531.25Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QI753.600e-3835.23Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3II314.150e-3432.80Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..24
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 47..104
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 379..475
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 105..127
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 128..356
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 25..46
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 357..378
NoneNo IPR availableTMHMMTMhelixcoord: 29..51
NoneNo IPR availableTMHMMTMhelixcoord: 357..379
NoneNo IPR availableTMHMMTMhelixcoord: 105..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:253240..254667 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6253.t1Ggra6253.t1Gracilaria gracilis GNS1m malemRNAtig00000879_pilon 253240..254667 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6253.t1 ID=Ggra6253.t1|Name=Ggra6253.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=476bp
MAQVTDGIDVTPKSTLSTIQFENEALNTVVTSLLTTLVIANLGSIINRLV
MLSRSDVFSYRAFARSYVFLNSDDPLRLWYWFRGCYDFRPANQSPTRYRI
FRRHLIAPLFARLCILVVSIGSIALALPSEKRLDGCSGGDYTVVQSPLRR
RPDVSPAEVLQVCTEIPLETHLGTVRSSASYCSYPVTPGDIPVLASLSSA
NEDVQASFVGVSYTNSSGLLLSLIFSGDRIEAIVSFVRWETENGNRYNSL
LPLWNDELHLNVIGEALGFSTNQDCNVTSLSSSSDKNDGTTLNVGVVGCA
FDASDAIRFVSAAMRESLSFRKEEGVALRAQLRNESTFEVDRMCAVDVAV
TLPLINIIPLVIVLASAFCLNVGIMLIVSRHGNAMDSAFHIVREVLGHDT
GANPLQVSTTDEGVEAVALKKYVCADDVSCHVGFVQGQGDFPVEEFYGGR
NVSRCLQVACRGPRFVSELSDKDGE*
back to top