Ggra6246.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6246.t1
Unique NameGgra6246.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length613
Homology
BLAST of Ggra6246.t1 vs. uniprot
Match: A0A2V3IFR3 (DUF659 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFR3_9FLOR)

HSP 1 Score: 123 bits (309), Expect = 9.910e-26
Identity = 71/206 (34.47%), Postives = 118/206 (57.28%), Query Frame = 0
Query:   68 LARLVVEEHPPFSILNKERGRDKPFAEYMQFIRRRISVPS-GYQM-------RKLVEKYYSILMDRVKNELTNILHEGYGTLMFDSFEDVNSAPKTNMLVRVMDSSGAIIRTIFLTAIYSGSSRCDVSHYAEMAVQTMRKWAKVDNYAAIVTDNTGDVKNACENLMRRLPRLLASQNQAHVADRLMADIGEISWIREVLGTVSDLV 265
            L + +V+   PFS+L+++ G D    ++ Q I   I++PS G Q+        K V++YY  +  RV   +  +L E Y TL+FD + D   A   N+L+ +  +   + RT FL +IY+GS  CD + YA +  + + ++  +    A+V+DNT     A E L ++   L++ Q+Q H+A+ LM DIG+ISW++EVL TVS ++
Sbjct:  180 LTKFMVKHMLPFSLLSRQPGSD----DFFQLIT--IAIPSLGQQIPTPRRMGNKNVKRYYEAMRSRVLESIAGLLSERYATLVFDGWTDTCGASVVNVLLSLTGTQ-KVRRTFFLRSIYTGSKSCDAALYAGICEEAIAEYGDIQRVCAVVSDNTSSCIKAKELLFQKYTHLVSVQDQPHMANLLMQDIGDISWVKEVLSTVSTVI 378          
BLAST of Ggra6246.t1 vs. uniprot
Match: A0A2V3ITC0 (DUF659 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITC0_9FLOR)

HSP 1 Score: 106 bits (264), Expect = 6.430e-21
Identity = 57/167 (34.13%), Postives = 93/167 (55.69%), Query Frame = 0
Query:  122 LMDRVKNELTNILHEGYGTLMFDSFEDVNSAPKTNMLVRVMDSSGAIIRTIFLTAIYSGSSRCDVSHYAEMAVQTMRKWAKVDNYAAIVTDNTGDVKNACENLMRRLPRLLASQNQAHVADRLMADIGEISWIREVLGTVSDLVVFNRKYRRLRERLLMMMKLYNSK 288
            +  RV   +  +L EGY TL+FD + D   A   N+L+ +  +   + RT FL +IY+GS  CD + YA +  + + ++  +    A+V DNT     A E L ++   L++ Q+Q H+A+ LM DIG+ISW++EVL  VS ++   R + +L  R   +   +N K
Sbjct:    1 MRSRVLESIAGLLSEGYATLVFDGWTDTCGASVVNVLLSLTGTQ-KVRRTFFLRSIYTGSKSCDAALYAGLCQEAIAEYGDIQRVCAVVGDNTSSCIKAKELLFQKYTHLVSVQDQPHMANLLMQDIGDISWVKEVLSIVSTVIADLRNHPKLYSRFKDLKTAFNLK 166          
BLAST of Ggra6246.t1 vs. uniprot
Match: A0A2V3INK0 (DUF659 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INK0_9FLOR)

HSP 1 Score: 100 bits (250), Expect = 6.020e-19
Identity = 53/161 (32.92%), Postives = 90/161 (55.90%), Query Frame = 0
Query:  126 VKNELTNILHEGYGTLMFDSFEDVNSAPKTNMLVRVMDSSGAIIRTIFLTAIYSGSSRCDVSHYAEMAVQTMRKWAKVDNYAAIVTDNTGDVKNACENLMRRLPRLLASQNQAHVADRLMADIGEISWIREVLGTVSDLVVFNRKYRRLRERLLMMMKLYN 286
            V   +  +L EGY TL+FD + D   A   N+L+ +  +   + RT FL +IY+GS  CD + YA +  + + ++  +    A+V+DNT     A E L ++   L++ Q+Q H+A+ L+ DIG+I W++EVL  VS ++   R + +L  R   +   +N
Sbjct:    5 VLESIAGLLSEGYATLVFDGWTDTCGASVVNVLLSLTGTQ-KVRRTFFLRSIYTGSKSCDAALYAGLCEEAIAEYGDIQRVCAVVSDNTSSCIKAKELLFQKYTHLVSVQDQPHMANLLIQDIGDIPWVKEVLSIVSTVIADLRNHPKLYSRFKDLKTAFN 164          
The following BLAST results are available for this feature:
BLAST of Ggra6246.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IFR39.910e-2634.47DUF659 domain-containing protein n=1 Tax=Gracilari... [more]
A0A2V3ITC06.430e-2134.13DUF659 domain-containing protein n=1 Tax=Gracilari... [more]
A0A2V3INK06.020e-1932.92DUF659 domain-containing protein n=1 Tax=Gracilari... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007021Domain of unknown function DUF659PFAMPF04937DUF659coord: 114..261
e-value: 3.5E-10
score: 39.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 298..348
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 298..339
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 131..279

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:194992..197004 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6246.t1Ggra6246.t1Gracilaria gracilis GNS1m malemRNAtig00000879_pilon 194992..197004 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6246.t1 ID=Ggra6246.t1|Name=Ggra6246.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=613bp
MRPSDARSFVNDATLIMIDIAKRDLINPSAWRSDPVYSQFTARKKEIGDD
CPAHQCAPVEHKISKLSLARLVVEEHPPFSILNKERGRDKPFAEYMQFIR
RRISVPSGYQMRKLVEKYYSILMDRVKNELTNILHEGYGTLMFDSFEDVN
SAPKTNMLVRVMDSSGAIIRTIFLTAIYSGSSRCDVSHYAEMAVQTMRKW
AKVDNYAAIVTDNTGDVKNACENLMRRLPRLLASQNQAHVADRLMADIGE
ISWIREVLGTVSDLVVFNRKYRRLRERLLMMMKLYNSKGRMERSAALRTG
NPGTNVSNDHSRGTSDRVPNSSAIVQSIPNPSFATTHVGTDREHNFRDDD
SEVQLMSLPLEGYPQLQNLVDDCVEDDEIVCGEHDGSIQSGSEGPEYCVS
GFVPEISSISRTMKPVSNLRFASAEKLLLGYRSSVRDKLARRKSLVDPSL
NDELFRRVEQAHGILKVCRTYLRVFDAETPLCSNRKKGPPPGMKRIKITL
LSDLHYAAALLDRFRTPRENIVEHMRHFRTHIKDNSDGGGVYTAGRSNVA
FMNEIVAQYQEECSLRIQQGIIRAEGNSGSGMTELQRQRGALSPVSVWVD
GSILLPNYRFSK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007021DUF659
IPR012337RNaseH-like_sf