Ggra6246.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6246.t1
Unique NameGgra6246.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length613
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:194992..197004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6246Ggra6246Gracilaria gracilis GNS1m malegenetig00000879_pilon 194992..197004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6246.t1Ggra6246.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 194992..197004 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6246.t1.stop1Ggra6246.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 194992..194994 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6246.t1.CDS1Ggra6246.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 194992..195382 -
Ggra6246.t1.CDS2Ggra6246.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000879_pilon 195494..195642 -
Ggra6246.t1.CDS3Ggra6246.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000879_pilon 195706..197004 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6246.t1.exon1Ggra6246.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 194992..195382 -
Ggra6246.t1.exon2Ggra6246.t1.exon2Gracilaria gracilis GNS1m maleexontig00000879_pilon 195494..195642 -
Ggra6246.t1.exon3Ggra6246.t1.exon3Gracilaria gracilis GNS1m maleexontig00000879_pilon 195706..197004 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6246.t1.intron1Ggra6246.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000879_pilon 195383..195493 -
Ggra6246.t1.intron2Ggra6246.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000879_pilon 195643..195705 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6246.t1.start1Ggra6246.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 197002..197004 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6246.t1 ID=Ggra6246.t1|Name=Ggra6246.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=613bp
MRPSDARSFVNDATLIMIDIAKRDLINPSAWRSDPVYSQFTARKKEIGDD
CPAHQCAPVEHKISKLSLARLVVEEHPPFSILNKERGRDKPFAEYMQFIR
RRISVPSGYQMRKLVEKYYSILMDRVKNELTNILHEGYGTLMFDSFEDVN
SAPKTNMLVRVMDSSGAIIRTIFLTAIYSGSSRCDVSHYAEMAVQTMRKW
AKVDNYAAIVTDNTGDVKNACENLMRRLPRLLASQNQAHVADRLMADIGE
ISWIREVLGTVSDLVVFNRKYRRLRERLLMMMKLYNSKGRMERSAALRTG
NPGTNVSNDHSRGTSDRVPNSSAIVQSIPNPSFATTHVGTDREHNFRDDD
SEVQLMSLPLEGYPQLQNLVDDCVEDDEIVCGEHDGSIQSGSEGPEYCVS
GFVPEISSISRTMKPVSNLRFASAEKLLLGYRSSVRDKLARRKSLVDPSL
NDELFRRVEQAHGILKVCRTYLRVFDAETPLCSNRKKGPPPGMKRIKITL
LSDLHYAAALLDRFRTPRENIVEHMRHFRTHIKDNSDGGGVYTAGRSNVA
FMNEIVAQYQEECSLRIQQGIIRAEGNSGSGMTELQRQRGALSPVSVWVD
GSILLPNYRFSK*
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spliced messenger RNA

>Ggra6246.t1 ID=Ggra6246.t1|Name=Ggra6246.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1839bp|location=Sequence derived from alignment at tig00000879_pilon:194992..197004- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACCGTCTGACGCTCGTAGTTTCGTCAACGATGCCACTTTGATAAT
GATCGATATCGCGAAACGGGATCTCATCAATCCAAGTGCATGGAGATCAG
ATCCAGTGTATTCGCAGTTTACTGCGAGGAAAAAGGAAATTGGAGACGAT
TGCCCTGCCCATCAATGTGCTCCTGTAGAGCACAAGATTTCGAAGCTTTC
GTTGGCACGATTGGTTGTGGAAGAACATCCTCCGTTCTCTATCCTCAATA
AAGAGAGAGGGCGAGATAAGCCATTCGCGGAATATATGCAGTTCATTCGT
AGAAGAATCTCAGTGCCCTCGGGGTATCAAATGAGGAAGTTGGTTGAGAA
GTACTACTCTATTCTGATGGATAGGGTGAAGAATGAGCTTACTAACATTC
TACACGAAGGGTATGGTACTCTCATGTTTGATTCGTTCGAAGACGTGAAT
AGCGCTCCGAAGACGAATATGTTGGTTCGCGTTATGGATTCATCCGGGGC
TATTATACGGACCATTTTTCTTACTGCGATCTACAGCGGGTCCTCGAGAT
GTGATGTCAGCCACTATGCCGAAATGGCTGTGCAAACGATGCGCAAATGG
GCCAAGGTAGACAACTACGCCGCAATCGTGACAGACAACACTGGAGATGT
GAAGAACGCGTGTGAGAATCTAATGAGACGATTACCTAGGTTGTTGGCCT
CGCAGAATCAAGCACATGTTGCTGACCGCCTAATGGCCGATATAGGTGAG
ATCTCTTGGATTCGAGAGGTGCTAGGGACTGTTTCGGATTTGGTTGTCTT
TAACAGAAAGTATAGACGTCTGAGAGAACGTTTATTGATGATGATGAAAC
TGTATAATTCAAAGGGGCGCATGGAGCGTAGCGCCGCTCTCAGAACAGGT
AATCCAGGCACTAATGTCTCCAACGACCATTCGCGTGGCACATCAGATCG
AGTGCCCAACAGCTCCGCTATTGTACAATCGATTCCAAACCCGAGCTTTG
CAACGACTCATGTAGGTACTGACCGTGAGCACAATTTTCGGGACGACGAT
TCGGAAGTACAGCTGATGAGCTTACCACTGGAGGGCTACCCACAGTTACA
AAACCTCGTCGACGACTGCGTCGAGGACGATGAAATCGTGTGTGGAGAAC
ATGATGGTTCCATTCAATCTGGATCCGAAGGGCCCGAGTACTGTGTGTCA
GGTTTTGTTCCTGAAATAAGTTCAATATCTAGAACAATGAAACCAGTTTC
TAATTTAAGGTTCGCGTCAGCCGAGAAGCTGCTTTTGGGGTACAGAAGTA
GTGTTCGCGATAAGCTGGCAAGAAGAAAGAGCCTCGTTGATCCTAGCCTC
AACGATGAGCTCTTTCGTAGAGTGGAACAGGCTCATGGAATCCTCAAAGT
TTGTAGAACGTACTTACGCGTCTTCGACGCCGAAACTCCTCTATGTTCAA
ATCGGAAGAAAGGTCCTCCACCCGGCATGAAACGAATTAAAATAACACTC
TTGTCTGACCTGCATTATGCTGCCGCTCTCCTTGACCGCTTCCGGACACC
TCGGGAGAACATCGTAGAGCACATGCGGCATTTTAGAACCCATATAAAGG
ACAACTCAGATGGTGGAGGTGTTTACACCGCTGGAAGGTCGAACGTAGCT
TTCATGAACGAGATTGTCGCCCAATATCAAGAAGAGTGTTCCCTACGGAT
ACAACAAGGAATTATTAGAGCTGAAGGGAATAGTGGCTCTGGAATGACAG
AGCTTCAAAGGCAGCGCGGCGCTCTTAGCCCGGTCAGCGTCTGGGTTGAC
GGAAGTATTTTACTGCCAAACTATCGTTTCTCGAAATGA
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protein sequence of Ggra6246.t1

>Ggra6246.t1 ID=Ggra6246.t1|Name=Ggra6246.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=613bp
MRPSDARSFVNDATLIMIDIAKRDLINPSAWRSDPVYSQFTARKKEIGDD
CPAHQCAPVEHKISKLSLARLVVEEHPPFSILNKERGRDKPFAEYMQFIR
RRISVPSGYQMRKLVEKYYSILMDRVKNELTNILHEGYGTLMFDSFEDVN
SAPKTNMLVRVMDSSGAIIRTIFLTAIYSGSSRCDVSHYAEMAVQTMRKW
AKVDNYAAIVTDNTGDVKNACENLMRRLPRLLASQNQAHVADRLMADIGE
ISWIREVLGTVSDLVVFNRKYRRLRERLLMMMKLYNSKGRMERSAALRTG
NPGTNVSNDHSRGTSDRVPNSSAIVQSIPNPSFATTHVGTDREHNFRDDD
SEVQLMSLPLEGYPQLQNLVDDCVEDDEIVCGEHDGSIQSGSEGPEYCVS
GFVPEISSISRTMKPVSNLRFASAEKLLLGYRSSVRDKLARRKSLVDPSL
NDELFRRVEQAHGILKVCRTYLRVFDAETPLCSNRKKGPPPGMKRIKITL
LSDLHYAAALLDRFRTPRENIVEHMRHFRTHIKDNSDGGGVYTAGRSNVA
FMNEIVAQYQEECSLRIQQGIIRAEGNSGSGMTELQRQRGALSPVSVWVD
GSILLPNYRFSK*
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mRNA from alignment at tig00000879_pilon:194992..197004-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6246.t1 ID=Ggra6246.t1|Name=Ggra6246.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2013bp|location=Sequence derived from alignment at tig00000879_pilon:194992..197004- (Gracilaria gracilis GNS1m male)
ATGAGACCGTCTGACGCTCGTAGTTTCGTCAACGATGCCACTTTGATAAT
GATCGATATCGCGAAACGGGATCTCATCAATCCAAGTGCATGGAGATCAG
ATCCAGTGTATTCGCAGTTTACTGCGAGGAAAAAGGAAATTGGAGACGAT
TGCCCTGCCCATCAATGTGCTCCTGTAGAGCACAAGATTTCGAAGCTTTC
GTTGGCACGATTGGTTGTGGAAGAACATCCTCCGTTCTCTATCCTCAATA
AAGAGAGAGGGCGAGATAAGCCATTCGCGGAATATATGCAGTTCATTCGT
AGAAGAATCTCAGTGCCCTCGGGGTATCAAATGAGGAAGTTGGTTGAGAA
GTACTACTCTATTCTGATGGATAGGGTGAAGAATGAGCTTACTAACATTC
TACACGAAGGGTATGGTACTCTCATGTTTGATTCGTTCGAAGACGTGAAT
AGCGCTCCGAAGACGAATATGTTGGTTCGCGTTATGGATTCATCCGGGGC
TATTATACGGACCATTTTTCTTACTGCGATCTACAGCGGGTCCTCGAGAT
GTGATGTCAGCCACTATGCCGAAATGGCTGTGCAAACGATGCGCAAATGG
GCCAAGGTAGACAACTACGCCGCAATCGTGACAGACAACACTGGAGATGT
GAAGAACGCGTGTGAGAATCTAATGAGACGATTACCTAGGTTGTTGGCCT
CGCAGAATCAAGCACATGTTGCTGACCGCCTAATGGCCGATATAGGTGAG
ATCTCTTGGATTCGAGAGGTGCTAGGGACTGTTTCGGATTTGGTTGTCTT
TAACAGAAAGTATAGACGTCTGAGAGAACGTTTATTGATGATGATGAAAC
TGTATAATTCAAAGGGGCGCATGGAGCGTAGCGCCGCTCTCAGAACAGGT
AATCCAGGCACTAATGTCTCCAACGACCATTCGCGTGGCACATCAGATCG
AGTGCCCAACAGCTCCGCTATTGTACAATCGATTCCAAACCCGAGCTTTG
CAACGACTCATGTAGGTACTGACCGTGAGCACAATTTTCGGGACGACGAT
TCGGAAGTACAGCTGATGAGCTTACCACTGGAGGGCTACCCACAGTTACA
AAACCTCGTCGACGACTGCGTCGAGGACGATGAAATCGTGTGTGGAGAAC
ATGATGGTTCCATTCAATCTGGATCCGAAGGGCCCGAGTACTGTGTGTCA
GGTTTTGTTCCTGAAATAAGTTCAATATCTAGAACAATGAAACCAGTTTC
TAATTTAAGGTTCGCGTCAGCCGAGAAGCTGCTTTTGGGGTACAGAAGTG
TCCGACATTTTGCTCAAAGAGCTTGTGACAGCAGATGACTTTGATGATTT
ATTTCCGCCCAGAGTGTTCGCGATAAGCTGGCAAGAAGAAAGAGCCTCGT
TGATCCTAGCCTCAACGATGAGCTCTTTCGTAGAGTGGAACAGGCTCATG
GAATCCTCAAAGTTTGTAGAACGTACTTACGCGTCTTCGACGCCGAAACT
CCTCTATGTTCGTAAGTTTTTGAAGCCACTCGCATCTCGGAGGACGCATT
ACGAAAACTACCGCTTGACAACTACCCATCTCCCCGACAATCGAACTGCG
AGCATCTGCTAAAAGTTTTCAGAAATCGGAAGAAAGGTCCTCCACCCGGC
ATGAAACGAATTAAAATAACACTCTTGTCTGACCTGCATTATGCTGCCGC
TCTCCTTGACCGCTTCCGGACACCTCGGGAGAACATCGTAGAGCACATGC
GGCATTTTAGAACCCATATAAAGGACAACTCAGATGGTGGAGGTGTTTAC
ACCGCTGGAAGGTCGAACGTAGCTTTCATGAACGAGATTGTCGCCCAATA
TCAAGAAGAGTGTTCCCTACGGATACAACAAGGAATTATTAGAGCTGAAG
GGAATAGTGGCTCTGGAATGACAGAGCTTCAAAGGCAGCGCGGCGCTCTT
AGCCCGGTCAGCGTCTGGGTTGACGGAAGTATTTTACTGCCAAACTATCG
TTTCTCGAAATGA
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Coding sequence (CDS) from alignment at tig00000879_pilon:194992..197004-

>Ggra6246.t1 ID=Ggra6246.t1|Name=Ggra6246.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1839bp|location=Sequence derived from alignment at tig00000879_pilon:194992..197004- (Gracilaria gracilis GNS1m male)
ATGAGACCGTCTGACGCTCGTAGTTTCGTCAACGATGCCACTTTGATAAT
GATCGATATCGCGAAACGGGATCTCATCAATCCAAGTGCATGGAGATCAG
ATCCAGTGTATTCGCAGTTTACTGCGAGGAAAAAGGAAATTGGAGACGAT
TGCCCTGCCCATCAATGTGCTCCTGTAGAGCACAAGATTTCGAAGCTTTC
GTTGGCACGATTGGTTGTGGAAGAACATCCTCCGTTCTCTATCCTCAATA
AAGAGAGAGGGCGAGATAAGCCATTCGCGGAATATATGCAGTTCATTCGT
AGAAGAATCTCAGTGCCCTCGGGGTATCAAATGAGGAAGTTGGTTGAGAA
GTACTACTCTATTCTGATGGATAGGGTGAAGAATGAGCTTACTAACATTC
TACACGAAGGGTATGGTACTCTCATGTTTGATTCGTTCGAAGACGTGAAT
AGCGCTCCGAAGACGAATATGTTGGTTCGCGTTATGGATTCATCCGGGGC
TATTATACGGACCATTTTTCTTACTGCGATCTACAGCGGGTCCTCGAGAT
GTGATGTCAGCCACTATGCCGAAATGGCTGTGCAAACGATGCGCAAATGG
GCCAAGGTAGACAACTACGCCGCAATCGTGACAGACAACACTGGAGATGT
GAAGAACGCGTGTGAGAATCTAATGAGACGATTACCTAGGTTGTTGGCCT
CGCAGAATCAAGCACATGTTGCTGACCGCCTAATGGCCGATATAGGTGAG
ATCTCTTGGATTCGAGAGGTGCTAGGGACTGTTTCGGATTTGGTTGTCTT
TAACAGAAAGTATAGACGTCTGAGAGAACGTTTATTGATGATGATGAAAC
TGTATAATTCAAAGGGGCGCATGGAGCGTAGCGCCGCTCTCAGAACAGGT
AATCCAGGCACTAATGTCTCCAACGACCATTCGCGTGGCACATCAGATCG
AGTGCCCAACAGCTCCGCTATTGTACAATCGATTCCAAACCCGAGCTTTG
CAACGACTCATGTAGGTACTGACCGTGAGCACAATTTTCGGGACGACGAT
TCGGAAGTACAGCTGATGAGCTTACCACTGGAGGGCTACCCACAGTTACA
AAACCTCGTCGACGACTGCGTCGAGGACGATGAAATCGTGTGTGGAGAAC
ATGATGGTTCCATTCAATCTGGATCCGAAGGGCCCGAGTACTGTGTGTCA
GGTTTTGTTCCTGAAATAAGTTCAATATCTAGAACAATGAAACCAGTTTC
TAATTTAAGGTTCGCGTCAGCCGAGAAGCTGCTTTTGGGGTACAGAAGTA
GTGTTCGCGATAAGCTGGCAAGAAGAAAGAGCCTCGTTGATCCTAGCCTC
AACGATGAGCTCTTTCGTAGAGTGGAACAGGCTCATGGAATCCTCAAAGT
TTGTAGAACGTACTTACGCGTCTTCGACGCCGAAACTCCTCTATGTTCAA
ATCGGAAGAAAGGTCCTCCACCCGGCATGAAACGAATTAAAATAACACTC
TTGTCTGACCTGCATTATGCTGCCGCTCTCCTTGACCGCTTCCGGACACC
TCGGGAGAACATCGTAGAGCACATGCGGCATTTTAGAACCCATATAAAGG
ACAACTCAGATGGTGGAGGTGTTTACACCGCTGGAAGGTCGAACGTAGCT
TTCATGAACGAGATTGTCGCCCAATATCAAGAAGAGTGTTCCCTACGGAT
ACAACAAGGAATTATTAGAGCTGAAGGGAATAGTGGCTCTGGAATGACAG
AGCTTCAAAGGCAGCGCGGCGCTCTTAGCCCGGTCAGCGTCTGGGTTGAC
GGAAGTATTTTACTGCCAAACTATCGTTTCTCGAAATGA
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