Ggra6245.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6245.t1
Unique NameGgra6245.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length230
Homology
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BLAST of Ggra6245.t1 vs. uniprot
Match: R7QHX1 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHX1_CHOCR)

HSP 1 Score: 104 bits (260), Expect = 1.690e-22
Identity = 58/129 (44.96%), Postives = 78/129 (60.47%), Query Frame = 0 
Query:  104 VSPASIASRLATFNVLLSRAKIKRLAADGDDASSREQPSLSAQKHLLPNPQHGADPGARENSWRWFDETTENED---STNVQCPPESERVCPMFYKFLRKYKIRCVYDIFCANNLDWIPPIVRKAGNEL 229
            VSP   +SR  T +   SR        D D+      P+  A+KH     + GA+PGA EN W+WF ET  +E    S ++ CP E+ER+C M YK+LRKYKIR ++D  CANN DW+P ++RK+GNEL
Sbjct:  229 VSPKKASSR-GTESSRPSRRDNNARKRDSDEDVDLNPPT--ARKHSKLG-EGGAEPGAGENFWQWFQETKGSEKGPVSGSISCPEETERLCQMTYKYLRKYKIRTIFDASCANNGDWMPEVLRKSGNEL 353
The following BLAST results are available for this feature:
BLAST of Ggra6245.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7QHX11.690e-2244.96Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..173
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 42..59
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 31..41
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..59
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 60..229
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..30

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:135875..136693 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6245.t1Ggra6245.t1Gracilaria gracilis GNS1m malemRNAtig00000879_pilon 135875..136693 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6245.t1 ID=Ggra6245.t1|Name=Ggra6245.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=230bp
MASMRDAMYSSRTPRRQAQKLRRLRSNSPRALSAALFFFLLRYEMVVLRP
PASSKQSLSARSVAPQPPVAPLWPASSAASPSSIAANTSQATAANHNIVA
KAAVSPASIASRLATFNVLLSRAKIKRLAADGDDASSREQPSLSAQKHLL
PNPQHGADPGARENSWRWFDETTENEDSTNVQCPPESERVCPMFYKFLRK
YKIRCVYDIFCANNLDWIPPIVRKAGNEL*
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