Ggra6245.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6245.t1
Unique NameGgra6245.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:135875..136693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6245Ggra6245Gracilaria gracilis GNS1m malegenetig00000879_pilon 135875..136693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6245.t1Ggra6245.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 135875..136693 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6245.t1.start1Ggra6245.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 135875..135877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6245.t1.CDS1Ggra6245.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 135875..136221 +
Ggra6245.t1.CDS2Ggra6245.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000879_pilon 136351..136693 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6245.t1.exon1Ggra6245.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 135875..136221 +
Ggra6245.t1.exon2Ggra6245.t1.exon2Gracilaria gracilis GNS1m maleexontig00000879_pilon 136351..136693 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6245.t1.intron1Ggra6245.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000879_pilon 136222..136350 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6245.t1.stop1Ggra6245.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 136691..136693 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6245.t1 ID=Ggra6245.t1|Name=Ggra6245.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=230bp
MASMRDAMYSSRTPRRQAQKLRRLRSNSPRALSAALFFFLLRYEMVVLRP
PASSKQSLSARSVAPQPPVAPLWPASSAASPSSIAANTSQATAANHNIVA
KAAVSPASIASRLATFNVLLSRAKIKRLAADGDDASSREQPSLSAQKHLL
PNPQHGADPGARENSWRWFDETTENEDSTNVQCPPESERVCPMFYKFLRK
YKIRCVYDIFCANNLDWIPPIVRKAGNEL*
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spliced messenger RNA

>Ggra6245.t1 ID=Ggra6245.t1|Name=Ggra6245.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000879_pilon:135875..136693+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAGCATGCGCGACGCTATGTACTCCTCGCGTACCCCTCGGCGTCA
AGCGCAAAAGCTGCGGCGTCTGCGGTCTAACTCACCGCGCGCTCTGTCTG
CTGCGCTCTTCTTCTTCCTTCTTCGCTACGAGATGGTTGTGTTACGTCCG
CCTGCCTCTTCCAAACAGTCCCTTTCTGCGCGCAGTGTGGCTCCGCAGCC
GCCGGTTGCTCCTTTGTGGCCGGCTTCGAGCGCCGCATCGCCTTCCTCGA
TTGCTGCTAATACGTCGCAGGCTACTGCTGCAAATCATAATATTGTCGCG
AAGGCTGCTGTATCACCGGCTTCTATCGCGTCCAGACTGGCTACATTCAA
CGTTCTTTTATCTCGCGCCAAAATAAAGAGACTCGCTGCTGATGGTGATG
ATGCTTCGTCTAGGGAGCAACCGTCTTTGTCCGCGCAAAAGCATCTGCTG
CCCAACCCACAGCATGGTGCAGATCCCGGTGCTCGTGAGAATTCCTGGCG
GTGGTTCGACGAGACCACGGAGAACGAAGATTCTACAAACGTACAGTGCC
CGCCGGAGTCCGAGCGCGTGTGCCCCATGTTTTATAAGTTCCTCAGAAAG
TACAAGATTCGTTGCGTGTACGATATCTTTTGTGCTAACAATTTGGACTG
GATACCGCCCATTGTGCGAAAGGCTGGTAATGAGTTATGA
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protein sequence of Ggra6245.t1

>Ggra6245.t1 ID=Ggra6245.t1|Name=Ggra6245.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=230bp
MASMRDAMYSSRTPRRQAQKLRRLRSNSPRALSAALFFFLLRYEMVVLRP
PASSKQSLSARSVAPQPPVAPLWPASSAASPSSIAANTSQATAANHNIVA
KAAVSPASIASRLATFNVLLSRAKIKRLAADGDDASSREQPSLSAQKHLL
PNPQHGADPGARENSWRWFDETTENEDSTNVQCPPESERVCPMFYKFLRK
YKIRCVYDIFCANNLDWIPPIVRKAGNEL*
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mRNA from alignment at tig00000879_pilon:135875..136693+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6245.t1 ID=Ggra6245.t1|Name=Ggra6245.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00000879_pilon:135875..136693+ (Gracilaria gracilis GNS1m male)
ATGGCGAGCATGCGCGACGCTATGTACTCCTCGCGTACCCCTCGGCGTCA
AGCGCAAAAGCTGCGGCGTCTGCGGTCTAACTCACCGCGCGCTCTGTCTG
CTGCGCTCTTCTTCTTCCTTCTTCGCTACGAGATGGTTGTGTTACGTCCG
CCTGCCTCTTCCAAACAGTCCCTTTCTGCGCGCAGTGTGGCTCCGCAGCC
GCCGGTTGCTCCTTTGTGGCCGGCTTCGAGCGCCGCATCGCCTTCCTCGA
TTGCTGCTAATACGTCGCAGGCTACTGCTGCAAATCATAATATTGTCGCG
AAGGCTGCTGTATCACCGGCTTCTATCGCGTCCAGACTGGCTACATTGTA
GAACGTTTCATCGTCTACTAGGCCCCCATTGATCTCCCAGTTGAGCGGCG
CCACTGACGGGGAACAGGCACTGCCTTCGCCTTCGTTTCATCCGCTTCAC
AAACGGCACTTCTATGGAAGTCACAGCAACGTTCTTTTATCTCGCGCCAA
AATAAAGAGACTCGCTGCTGATGGTGATGATGCTTCGTCTAGGGAGCAAC
CGTCTTTGTCCGCGCAAAAGCATCTGCTGCCCAACCCACAGCATGGTGCA
GATCCCGGTGCTCGTGAGAATTCCTGGCGGTGGTTCGACGAGACCACGGA
GAACGAAGATTCTACAAACGTACAGTGCCCGCCGGAGTCCGAGCGCGTGT
GCCCCATGTTTTATAAGTTCCTCAGAAAGTACAAGATTCGTTGCGTGTAC
GATATCTTTTGTGCTAACAATTTGGACTGGATACCGCCCATTGTGCGAAA
GGCTGGTAATGAGTTATGA
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Coding sequence (CDS) from alignment at tig00000879_pilon:135875..136693+

>Ggra6245.t1 ID=Ggra6245.t1|Name=Ggra6245.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=690bp|location=Sequence derived from alignment at tig00000879_pilon:135875..136693+ (Gracilaria gracilis GNS1m male)
ATGGCGAGCATGCGCGACGCTATGTACTCCTCGCGTACCCCTCGGCGTCA
AGCGCAAAAGCTGCGGCGTCTGCGGTCTAACTCACCGCGCGCTCTGTCTG
CTGCGCTCTTCTTCTTCCTTCTTCGCTACGAGATGGTTGTGTTACGTCCG
CCTGCCTCTTCCAAACAGTCCCTTTCTGCGCGCAGTGTGGCTCCGCAGCC
GCCGGTTGCTCCTTTGTGGCCGGCTTCGAGCGCCGCATCGCCTTCCTCGA
TTGCTGCTAATACGTCGCAGGCTACTGCTGCAAATCATAATATTGTCGCG
AAGGCTGCTGTATCACCGGCTTCTATCGCGTCCAGACTGGCTACATTCAA
CGTTCTTTTATCTCGCGCCAAAATAAAGAGACTCGCTGCTGATGGTGATG
ATGCTTCGTCTAGGGAGCAACCGTCTTTGTCCGCGCAAAAGCATCTGCTG
CCCAACCCACAGCATGGTGCAGATCCCGGTGCTCGTGAGAATTCCTGGCG
GTGGTTCGACGAGACCACGGAGAACGAAGATTCTACAAACGTACAGTGCC
CGCCGGAGTCCGAGCGCGTGTGCCCCATGTTTTATAAGTTCCTCAGAAAG
TACAAGATTCGTTGCGTGTACGATATCTTTTGTGCTAACAATTTGGACTG
GATACCGCCCATTGTGCGAAAGGCTGGTAATGAGTTATGA
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