Ggra6216.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6216.t1
Unique NameGgra6216.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length383
Homology
BLAST of Ggra6216.t1 vs. uniprot
Match: A0A2V3IRD3 (DNA mismatch repair protein MSH5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRD3_9FLOR)

HSP 1 Score: 273 bits (697), Expect = 3.280e-80
Identity = 191/547 (34.92%), Postives = 262/547 (47.90%), Query Frame = 0
Query:    1 MAKVLRGGKWGSAPSTSNSRSEVPSR----SQSERDADENSNEKGVLISFVEQKKPIDVAV------------VSCAEDYHDASRIVSVHDQCFIILPKLYQDDDKLINAIRPNVVPQTA-----------REQYQMSRGSHDRPP---------------KTRALLPLLSLIIPPPSSQVLNSALTKPRSSARCENAIIRAVGGLLSCILQQGVLGTLGGDSDEVRINAIFPKNYSNTMRMSPI---------------------------------------------------------------------------------------------------------------------------ALKTAAQQDERLLQSSLITRALRINESKLREPARWIESAVDFEECEATGRMVAAAGFSAEIDDLKRPPSGLDDFLTKVGINELERMTESSHALQIRSFHFKYEAQFGSLIVFPDRECEEIGIESFEEHCISFRFKSDDDGYHFKNKKCYDLDEEIGDIRGTILELKEHASRYLEATMLD 382
            MAKVLRGGKWG APS SNS S+  S     S++ RD+  ++  + +L SFVE +K + VA+            V C E+Y D SRIV+++++CF++LP  YQ +D+L+ A+R + V QT            R     S  S D  P               K+R L PLLS I+  P++    + +         +N IIRA+GGLL+ ILQQGVLG L   SD++ INAI PKN+ N MR+SP                                                                                                                            AL+ A +Q+  LL+SSL++R L ++ES++R+ ARWIES VDFEE + TGR++ +AGFS+ IDDLKR  SGLD+ L  +GI EL +MTE   +++ +S +FKY    G LI     ECEEIG++  EEH + F F+ DD  YHFKNK+C +LDEEIGDI G I+EL+  A  YL   +L+
Sbjct:    1 MAKVLRGGKWGPAPSRSNSYSQARSNQRTISETARDSYPDNKIESIL-SFVEGRKELGVALYESSTNMMFISKVPCFENYSDVSRIVALYERCFVVLPNSYQTNDRLLAALRSSAVLQTPSIPQDSSGVDPRPSTGTSASSTDFRPENSISFLPNSDFSLKKSRELCPLLS-ILDMPTNLSSEARMQYLSHIVEGDNLIIRAIGGLLAFILQQGVLGILQHKSDDICINAISPKNFCNLMRISPATQRSLNIFSYEAHPLGRGGLSAKEGLSLFGILKSHVKTGAARHLLRSWLLHPLTDVPKIRERQFLVRTLKDNGKRTFLITIRDALRGVKNVSGLLARLRRCTTDINDWKALHSSATAFIVIIEALRAAVRQNSNLLESSLVSRVLGVSESQIRDTARWIESVVDFEESKETGRLIVSAGFSSHIDDLKRTYSGLDELLRTIGIEELSKMTEGDGSIRFKSCNFKYIPNIGFLIAISTMECEEIGLDRLEEHGLEFVFRPDDTSYHFKNKRCLELDEEIGDIYGNIVELESQAFSYLGGKILE 545          
BLAST of Ggra6216.t1 vs. uniprot
Match: R7QMJ8 (MUTSd domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMJ8_CHOCR)

HSP 1 Score: 152 bits (383), Expect = 5.100e-38
Identity = 75/178 (42.13%), Postives = 111/178 (62.36%), Query Frame = 0
Query:  205 LKTAAQQDERLLQSSLITRALRINESKLREPARWIESAVDFEECEATGRMVAAAGFSAEIDDLKRPPSGLDDFLTKVGINELERMTESSHALQIRSFHFKYEAQFGSLIVFPDRECEEIGIESFEEHCISFRFKSDDDGYHFKNKKCYDLDEEIGDIRGTILELKEHASRYLEATMLD 382
            +K A QQ+E +  S L   A  ++E+ LR+   WI++ VDFEE  A+G++V A GFS EID++KR  SGLDDFLT V + E E   E  +   + S  F Y+ Q G L++    + + +G E+ ++  +SF F S + GYHFKN +C  LD+E+GDI G I++L+  A RYLE  + +
Sbjct:  221 MKVAMQQNEDVKSSPLFAHATSVSETHLRQCVDWIDAVVDFEESTASGKLVVAQGFSEEIDEMKRCHSGLDDFLTSVAVQEHENFLEMDNPPSLSSLCFTYQPQIGYLVMLSKADVDRVGFENLKQCGMSFIFSSPEQGYHFKNDRCTQLDDELGDIYGAIMDLESKAYRYLETKVFE 398          
BLAST of Ggra6216.t1 vs. uniprot
Match: A0A1X6NMY5 (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NMY5_PORUM)

HSP 1 Score: 65.5 bits (158), Expect = 8.150e-8
Identity = 49/185 (26.49%), Postives = 82/185 (44.32%), Query Frame = 0
Query:  227 INESKLREPARWIESAVDFEECEATGRMVAAA---GFSAEIDDLKRPPSGLDDFLTKVGINELERMTESSHALQIRSFHFKYEAQFGSLIVFPDRECEEIGIE---------------------------SFEEHCISFRFKSDDDGYHFKNKKCYDLDEEIGDIRGTILELKEHASRYLEATML 381
            + E  LR+   WIE+ +DF     TG         G S ++D+L+R    LDDFL+ +G+ E+  +T  S  LQ+   H  +  + G L+V       +   +                           +  E  + F F +D+  Y FKN++C++LD E+GDI   I  +++ A  YL   ++
Sbjct:  384 VPEEGLRQVCTWIENTIDFP-ASLTGNSTRPRIRDGLSEDLDELRRCFDSLDDFLSDIGVQEMNALT--SRGLQLDRLHIIFLPRVGYLLVLSHATAIDAAQQVVDGAGEDDVNSRLSASSRASTVSEQSALAEVGLEFVFTTDEHVY-FKNERCHELDNELGDISSAIEAVEQKAVCYLRTKVV 564          
BLAST of Ggra6216.t1 vs. uniprot
Match: M2XAS8 (DNA mismatch repair protein MutS n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XAS8_GALSU)

HSP 1 Score: 59.7 bits (143), Expect = 5.600e-6
Identity = 44/159 (27.67%), Postives = 77/159 (48.43%), Query Frame = 0
Query:  232 LREPARWIESAVDFEECEATGRMVAAAGFSAEIDDLKRPPSGLDDFLTKVGINELERMTESSHALQIRSFHFKYEAQFGSLIVFPDRECEEIG---------IESFEEHCISFRFKSDDDGYHFKNKKCYDLDEEIGDIRGTILELKEHASRYLEATML 381
            LR    WIE  ++F+E +  GR+    G+  ++D+ +     L++ LT+VG NE+ER+   +  + I      Y  + G L+     + E  G         ++S+ +  +   F + D  Y +K     +LDE++GDI  TILEL+      LE  ++
Sbjct:  377 LRNILSWIERVLNFKESKLQGRIYVNDGYCEDLDNARCFYYSLEEHLTEVGSNEIERL--DALGVHIPWIKVTYIPRLGYLLATGKEDNESRGDTIGSLDLTVQSYAKD-LELAFSTSDTVY-YKTSTMRELDEKLGDIFDTILELENECLHVLEQQVI 531          
The following BLAST results are available for this feature:
BLAST of Ggra6216.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IRD33.280e-8034.92DNA mismatch repair protein MSH5 n=1 Tax=Gracilari... [more]
R7QMJ85.100e-3842.13MUTSd domain-containing protein n=1 Tax=Chondrus c... [more]
A0A1X6NMY58.150e-826.49DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
M2XAS85.600e-627.67DNA mismatch repair protein MutS n=1 Tax=Galdieria... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
IPR036187DNA mismatch repair protein MutS, core domain superfamilySUPERFAMILY48334DNA repair protein MutS, domain IIIcoord: 229..371

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000167_piloncontigtig00000167_pilon:134823..136600 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6216.t1Ggra6216.t1Gracilaria gracilis GNS1m malemRNAtig00000167_pilon 134823..136600 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6216.t1 ID=Ggra6216.t1|Name=Ggra6216.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=383bp
MAKVLRGGKWGSAPSTSNSRSEVPSRSQSERDADENSNEKGVLISFVEQK
KPIDVAVVSCAEDYHDASRIVSVHDQCFIILPKLYQDDDKLINAIRPNVV
PQTAREQYQMSRGSHDRPPKTRALLPLLSLIIPPPSSQVLNSALTKPRSS
ARCENAIIRAVGGLLSCILQQGVLGTLGGDSDEVRINAIFPKNYSNTMRM
SPIALKTAAQQDERLLQSSLITRALRINESKLREPARWIESAVDFEECEA
TGRMVAAAGFSAEIDDLKRPPSGLDDFLTKVGINELERMTESSHALQIRS
FHFKYEAQFGSLIVFPDRECEEIGIESFEEHCISFRFKSDDDGYHFKNKK
CYDLDEEIGDIRGTILELKEHASRYLEATMLD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036187DNA_mismatch_repair_MutS_sf