Ggra5847.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5847.t1
Unique NameGgra5847.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length257
Homology
BLAST of Ggra5847.t1 vs. uniprot
Match: A0A2V3J307 (Splicing factor 3A subunit 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J307_9FLOR)

HSP 1 Score: 411 bits (1057), Expect = 9.740e-144
Identity = 206/252 (81.75%), Postives = 219/252 (86.90%), Query Frame = 0
Query:    1 MAYRDWGSKTGGGGVASKEHEALARKERLRQLAMDTVDLKNDPYFMRNHLGTYECKLCLTLHPNEGNYLAHTQGRRHQSNLKRRAAMESQKEAAKPRAPMAVSIRRIMHKRLKIGTPGYQITKQKHPQTGQLSLLFQLRYPQIADGLQPRHRFMSAFEQKKERPDRRYQYLLFAAEPYETVAFKIPNMPIDKGEGTFYTNWDQEGKTFTLQLFFEQQKHQGKANGAMDEPVKGQTMHIEKELSRPKDPFAGI 252
            MAYRDWGSKTGGGGVASKEHE LARKERLRQLAMDTVDLKNDPYFMRNHLGTYECKLCLTLH NEGNYLAHTQGRRHQSNLKRRAAMESQKEAAKPRAP+A  IR IM KR KIGTPGYQITKQ+ P TGQLSLLFQ+RYPQIA+GLQPRHRFMSAFEQKKERPDRRYQYLLFAAEPYETVAFKIPN+ IDK EG FYTNWD++G  FTLQLFFE  K  G+     +      T+  EK+  +P+DPFAGI
Sbjct:    1 MAYRDWGSKTGGGGVASKEHEELARKERLRQLAMDTVDLKNDPYFMRNHLGTYECKLCLTLHANEGNYLAHTQGRRHQSNLKRRAAMESQKEAAKPRAPLAAEIRTIMRKRHKIGTPGYQITKQRDPSTGQLSLLFQIRYPQIAEGLQPRHRFMSAFEQKKERPDRRYQYLLFAAEPYETVAFKIPNLSIDKSEGRFYTNWDRDGNIFTLQLFFE--KLGGRIGEQSEVRKPADTLQPEKQ-PKPRDPFAGI 249          
BLAST of Ggra5847.t1 vs. uniprot
Match: R7QFS3 (Matrin-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFS3_CHOCR)

HSP 1 Score: 374 bits (960), Expect = 7.100e-129
Identity = 183/257 (71.21%), Postives = 209/257 (81.32%), Query Frame = 0
Query:    1 MAYRDWGSKTGGGGVASKEHEALARKERLRQLAMDTVDLKNDPYFMRNHLGTYECKLCLTLHPNEGNYLAHTQGRRHQSNLKRRAAMESQKEAAKPRAPMAVSIRRIMHKRLKIGTPGYQITKQKHPQTGQLSLLFQLRYPQIADGLQPRHRFMSAFEQKKERPDRRYQYLLFAAEPYETVAFKIPNMPIDKGEGTFYTNWDQEGKTFTLQLFFEQQKHQGKANG--AMDEPVKGQTMHIEKELSRPKDPFAGIGHP 255
            MAYRDWG+KTGGGGVASKEHE LARKERLR+LAM+TVDLKNDPYFMRNHLGTYECKLCLTLH NEGNYLAH QGRRHQ NL+RRAA+ES+K+AAKPRAP+A + R  M +R+KIG PGYQITKQ+ P T Q SLLFQ+RYP+I +GLQPRHRFMSAFEQK+E+P+ +YQYLLFAAEPYETVAF+IPN PIDKGEG FYTNWD+    FTLQL+FE +K      G  A +  + G T   +       DPFAGI  P
Sbjct:    1 MAYRDWGAKTGGGGVASKEHENLARKERLRELAMETVDLKNDPYFMRNHLGTYECKLCLTLHGNEGNYLAHAQGRRHQGNLRRRAALESKKQAAKPRAPIAATARATMRRRMKIGRPGYQITKQRDPNTKQFSLLFQIRYPEITEGLQPRHRFMSAFEQKREKPNGKYQYLLFAAEPYETVAFRIPNQPIDKGEGKFYTNWDKNFLNFTLQLYFENRKAGKDTAGTAAKNVDIAGGTEGPKNGSKNEADPFAGISQP 257          
BLAST of Ggra5847.t1 vs. uniprot
Match: M2XFA4 (Splicing factor 3A subunit 2 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XFA4_GALSU)

HSP 1 Score: 305 bits (780), Expect = 1.200e-101
Identity = 147/249 (59.04%), Postives = 187/249 (75.10%), Query Frame = 0
Query:    4 RDWGSKTGGGGVASKEHEALARKERLRQLAMDTVDLKNDPYFMRNHLGTYECKLCLTLHPNEGNYLAHTQGRRHQSNLKRRAAMESQKEAAKPRAPMAVSIRRIMHKRLKIGTPGYQITKQKHPQTGQLSLLFQLRYPQIADGLQPRHRFMSAFEQKKERPDRRYQYLLFAAEPYETVAFKIPNMPIDKGEGTFYTNWDQEGKTFTLQLFFEQQKHQGKANGAMDEPVKGQTMHIEKELSRPKDPFAGI 252
            RDWG KTGGGGVAS E   ++R+ERLRQLA++T+DLK DPYFMRNHLG YECKLCLTLH NEGNYLAHTQGRRHQ NL RRAA E++++      P  +    +  K +KIG PGY+I KQ+ P+T QLSLLFQ++YP+IA+ +QPRHRFMS+FEQK ERPD +YQ+LLFAAEPYET+AFKIPN  I+K EG +Y +WD++ KTFTLQ++F+ +      N    + +  Q   +   + + +DPFA I
Sbjct:    3 RDWGGKTGGGGVASSEQTEVSRRERLRQLALETIDLKKDPYFMRNHLGGYECKLCLTLHTNEGNYLAHTQGRRHQMNLARRAAREAKEKPQTVAPPPKI----VPKKTIKIGRPGYRIIKQRDPETDQLSLLFQIQYPEIAEDVQPRHRFMSSFEQKVERPDPKYQFLLFAAEPYETIAFKIPNWEIEKSEGNYYLHWDKDNKTFTLQIYFKPRSQPPVKN---QQEIPSQQASVGNLMKQQRDPFAPI 244          
BLAST of Ggra5847.t1 vs. uniprot
Match: A0A7S0BSL8 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BSL8_9RHOD)

HSP 1 Score: 291 bits (745), Expect = 4.260e-96
Identity = 146/227 (64.32%), Postives = 179/227 (78.85%), Query Frame = 0
Query:    4 RDWGSKTGGGGVASKEHEALARKERLRQLAMDTVDLKNDPYFMRNHLGTYECKLCLTLHPNEGNYLAHTQGRRHQSNLKRRAAMESQKEAAKPRAPM-AVSIRRIM-HKRLKIGTPGYQITKQKHPQTGQLSLLFQLRYPQIADGLQPRHRFMSAFEQKKERPDRRYQYLLFAAEPYETVAFKIPNMPIDKGEGTFYTNWDQEGKTFTLQLFFE--QQKHQGKANGA 226
            RDWG+KTGGGGVAS +   +AR+ERLRQLA+DT+DL+ DPY MRNHLG+YECKLCLTLH NEGNYLAHTQGRRHQSNL RRAA E++       AP+ A ++++I   K +KIG PGY+I KQK P T QLSLLF + YP+I +GLQPR+RFMSA+EQ+KE PD+ +QYLLFAAEPYET+AFKIPN  +DK +G F+  WD+    FTLQLFF+  QQ+ + KA  A
Sbjct:    3 RDWGAKTGGGGVASGDQTNIARRERLRQLALDTIDLEKDPYLMRNHLGSYECKLCLTLHNNEGNYLAHTQGRRHQSNLARRAAREARN------APVTAPTVKKIQPRKTIKIGRPGYRIVKQKDPSTKQLSLLFNVEYPEIVEGLQPRYRFMSAYEQRKEAPDKDWQYLLFAAEPYETIAFKIPNWEVDKDQGKFFNQWDKGKFVFTLQLFFKSKQQREEAKAKAA 223          
BLAST of Ggra5847.t1 vs. uniprot
Match: A0A7S3XZJ6 (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZJ6_HETAK)

HSP 1 Score: 281 bits (718), Expect = 2.750e-91
Identity = 135/210 (64.29%), Postives = 163/210 (77.62%), Query Frame = 0
Query:    7 GSKTGGGGVASKEHEALARKERLRQLAMDTVDLKNDPYFMRNHLGTYECKLCLTLHPNEGNYLAHTQGRRHQSNLKRRAAMESQKEAAKPRAPMAVSIRRIMHKRLKIGTPGYQITKQKHPQTGQLSLLFQLRYPQIADGLQPRHRFMSAFEQKKERPDRRYQYLLFAAEPYETVAFKIPNMPIDKGEGTFYTNWDQEGKTFTLQLFFEQ 216
            G K GGGG  S ++EA+ R+ERLR+LAM+T+DL  DPYFMRNHLGTYECKLCLTLH NEGNYLAHTQG+RHQ NL RRAA+E++    KP+A   V  RR     +KIG PGY++TK +  +T Q SLLF++  P++ +G QPRHRFMSA+EQK E PD+ YQYLL A EPYETVAFKIPN P+DKGEG F+TNWD   K FTLQL+F +
Sbjct:  104 GIKFGGGGAMSSQNEAIERRERLRKLAMETLDLAKDPYFMRNHLGTYECKLCLTLHNNEGNYLAHTQGKRHQQNLARRAALEARDAPIKPQAARVVPTRRT----IKIGRPGYKVTKSRDVETKQRSLLFEVDCPEVEEGAQPRHRFMSAYEQKVEAPDKAYQYLLVACEPYETVAFKIPNQPLDKGEGRFFTNWDANNKKFTLQLYFRE 309          
BLAST of Ggra5847.t1 vs. uniprot
Match: A0A7S0HE94 (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HE94_9EUKA)

HSP 1 Score: 277 bits (708), Expect = 8.710e-91
Identity = 134/212 (63.21%), Postives = 163/212 (76.89%), Query Frame = 0
Query:    4 RDWGSKTGGGGVASKEHEALARKERLRQLAMDTVDLKNDPYFMRNHLGTYECKLCLTLHPNEGNYLAHTQGRRHQSNLKRRAAMESQKEAAKPRAPMAVSIRRIMHKRLKIGTPGYQITKQKHPQTGQLSLLFQLRYPQIADGLQPRHRFMSAFEQKKERPDRRYQYLLFAAEPYETVAFKIPNMPIDKGEGTFYTNWDQEGKTFTLQLFFE 215
            RDWG+K+GGGGVAS     + R+ERLRQLA+ TVDL  DPYFM+NHLG+YECKLCLTLH NEGNYLAHTQG+RHQ NL RRA  E +     P  P A   +    K +KIG PGY+ITKQ  P++ Q SLLF++ YP+I +GLQPRHRFMSA+EQ+ E P++ +QYLLFAAEPYET+ FKIPN+ IDK  G FY+NWD+E K F LQL+F+
Sbjct:    6 RDWGAKSGGGGVASDIQAKVDRRERLRQLALQTVDLMKDPYFMKNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQQNLARRALKEQRDN---PMLPQANKDKVKPRKTIKIGRPGYRITKQMDPESEQRSLLFEVDYPEIEEGLQPRHRFMSAYEQRVEAPEKDWQYLLFAAEPYETIGFKIPNIEIDKESGKFYSNWDEENKVFVLQLYFK 214          
BLAST of Ggra5847.t1 vs. uniprot
Match: A0A7S0INR4 (Hypothetical protein n=4 Tax=Prymnesiophyceae TaxID=2608131 RepID=A0A7S0INR4_9EUKA)

HSP 1 Score: 277 bits (708), Expect = 9.010e-91
Identity = 137/217 (63.13%), Postives = 168/217 (77.42%), Query Frame = 0
Query:    1 MAY--RDWGSKTGGGGVASKEHEALARKERLRQLAMDTVDLKNDPYFMRNHLGTYECKLCLTLHPNEGNYLAHTQGRRHQSNLKRRAAMESQKEAAKPRAPMAVSIRRIMHKRLKIGTPGYQITKQKHPQTGQLSLLFQLRYPQIADGLQPRHRFMSAFEQKKERPDRRYQYLLFAAEPYETVAFKIPNMPIDKGEGTFYTNWDQEGKTFTLQLFFE 215
            M+Y  RDWG+K GGGGVAS   + + R+ERLRQLA+ TVDL+ DPYFM+NHLG+YECKLCLTLH NEGNYLAHTQG+RHQ NL RRAA E++     P+A    SI+    K +KIG PGY++TKQ  P+T Q SLLF++ YP+I D LQPRHRFMSA+EQ+ E P++ +QYLLFAAEPYET+ FKIPN  IDK    F+T+WD E K FTLQL+F+
Sbjct:    6 MSYMDRDWGAKAGGGGVASDIQQKVDRRERLRQLALQTVDLQKDPYFMKNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQQNLARRAAKEARDNPTLPQANKR-SIK--PRKTVKIGKPGYRVTKQMDPETSQRSLLFEIDYPEIEDTLQPRHRFMSAYEQRVEAPEKEWQYLLFAAEPYETIGFKIPNQEIDKNPTKFFTSWDGENKVFTLQLYFK 219          
BLAST of Ggra5847.t1 vs. uniprot
Match: A0A2I4C9J7 (splicing factor 3A subunit 2 n=6 Tax=Percomorphaceae TaxID=1489872 RepID=A0A2I4C9J7_9TELE)

HSP 1 Score: 278 bits (712), Expect = 1.240e-90
Identity = 139/258 (53.88%), Postives = 185/258 (71.71%), Query Frame = 0
Query:    7 GSKTGGGGVASKEHEALARKERLRQLAMDTVDLKNDPYFMRNHLGTYECKLCLTLHPNEGNYLAHTQGRRHQSNLKRRAAMESQKEAAKPRAPMAVSIRRIMHKRLKIGTPGYQITKQKHPQTGQLSLLFQLRYPQIADGLQPRHRFMSAFEQKKERPDRRYQYLLFAAEPYETVAFKIPNMPIDKGEGTFYTNWDQEGKTFTLQLFFEQQKHQGKANGAMDEP--------VKGQTMHIEKELSRPKDPFAGIGHPM 256
            G KTG GGVAS       R+ERLRQLA++T+D+  DPYFM+NHLG+YECKLCLTLH NEG+YLAHTQG++HQ+NL RRAA E+++  A+P AP  V +   + K +KIG PGY++TKQ+ P+TGQ SLLFQ+ YP+IA+G+ PRHRFMSA+EQ+ E PDRR+QYLLFAAEPYET+AFK+P+  IDK E  F+T+W++E K F LQ  F+ +K   ++ G +  P        + G  +H + +   P  P     HP+
Sbjct:    8 GGKTGSGGVASASESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKESPAQP-APAKVKVE--VKKFVKIGRPGYKVTKQRDPETGQQSLLFQIDYPEIAEGIGPRHRFMSAYEQRIEPPDRRWQYLLFAAEPYETIAFKVPSREIDKAENRFWTHWNKETKQFFLQFHFKMEKAISQSTGPVPPPNVKHPLPHLGGPGLHPQNDSLPPPPPGGMPVHPL 262          
BLAST of Ggra5847.t1 vs. uniprot
Match: D8LTA0 (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA0_ECTSI)

HSP 1 Score: 276 bits (706), Expect = 1.190e-89
Identity = 132/209 (63.16%), Postives = 161/209 (77.03%), Query Frame = 0
Query:    7 GSKTGGGGVASKEHEALARKERLRQLAMDTVDLKNDPYFMRNHLGTYECKLCLTLHPNEGNYLAHTQGRRHQSNLKRRAAMESQKEAAKPRAPMAVSIRRIMHKRLKIGTPGYQITKQKHPQTGQLSLLFQLRYPQIADGLQPRHRFMSAFEQKKERPDRRYQYLLFAAEPYETVAFKIPNMPIDKGEGTFYTNWDQEGKTFTLQLFFE 215
            GSK GGGGV S+   A+ R+ERLR+LA +TVDL  DPYFMRNHLG YECKLCLTLH NEGNYLAHTQG+RHQ NL RRAAME++    KP+  + V  R +    +KIG PGY++TK +   + Q SLLF++ YP+  DG QPRHRFMSA+EQK E PD+ YQYLLFA +PYET+ FK+PN+ IDK EG F+TNW++E K FTLQL+FE
Sbjct:   87 GSKFGGGGVMSEGQAAVDRRERLRKLAQETVDLNKDPYFMRNHLGKYECKLCLTLHNNEGNYLAHTQGKRHQQNLARRAAMEAKNALVKPQPAITVQTRNV----IKIGRPGYKVTKARDLSSNQRSLLFEVDYPEAEDGAQPRHRFMSAYEQKVEAPDKGYQYLLFACDPYETIGFKVPNLKIDKQEGRFFTNWEKEAKKFTLQLYFE 291          
BLAST of Ggra5847.t1 vs. uniprot
Match: A0A7K6QLZ6 (SF3A2 factor (Fragment) n=2 Tax=Amniota TaxID=32524 RepID=A0A7K6QLZ6_9PASS)

HSP 1 Score: 273 bits (697), Expect = 2.460e-89
Identity = 131/212 (61.79%), Postives = 169/212 (79.72%), Query Frame = 0
Query:    7 GSKTGGGGVASKEHEALARKERLRQLAMDTVDLKNDPYFMRNHLGTYECKLCLTLHPNEGNYLAHTQGRRHQSNLKRRAAMESQKEAAKPRAPMAVSIRRIMHKRLKIGTPGYQITKQKHPQTGQLSLLFQLRYPQIADGLQPRHRFMSAFEQKKERPDRRYQYLLFAAEPYETVAFKIPNMPIDKGEGTFYTNWDQEGKTFTLQLFFEQQK 218
            G KTG GGVAS      AR+ERLRQLA++T+D+  DPYFM+NHLG+YECKLCLTLH NEG+YLAHTQG++HQ+NL RRAA E+++  A+P AP  V +   + K +KIG PGY++TKQ+ P+TGQ SLLFQ+ YP+IA+ + PRHRFMSA+EQ+ E PDRR+QYLL AAEPYET+AFK+P+  IDK EG F+T+W++E K F LQ  F+ +K
Sbjct:    8 GGKTGSGGVASASESNRARRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQP-APEKVKVE--VKKFVKIGRPGYKVTKQRDPETGQQSLLFQIDYPEIAESIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKMEK 216          
The following BLAST results are available for this feature:
BLAST of Ggra5847.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3079.740e-14481.75Splicing factor 3A subunit 2 n=1 Tax=Gracilariopsi... [more]
R7QFS37.100e-12971.21Matrin-type domain-containing protein n=1 Tax=Chon... [more]
M2XFA41.200e-10159.04Splicing factor 3A subunit 2 n=1 Tax=Galdieria sul... [more]
A0A7S0BSL84.260e-9664.32Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3XZJ62.750e-9164.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0HE948.710e-9163.21Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S0INR49.010e-9163.13Hypothetical protein n=4 Tax=Prymnesiophyceae TaxI... [more]
A0A2I4C9J71.240e-9053.88splicing factor 3A subunit 2 n=6 Tax=Percomorphace... [more]
D8LTA01.190e-8963.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7K6QLZ62.460e-8961.79SF3A2 factor (Fragment) n=2 Tax=Amniota TaxID=3252... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM01050CactinC_cactus_3coord: 88..221
e-value: 1.4E-15
score: 67.7
NoneNo IPR availablePFAMPF12874zf-metcoord: 53..77
e-value: 7.2E-6
score: 26.2
NoneNo IPR availableGENE3D2.60.40.2690coord: 97..223
e-value: 5.1E-38
score: 131.9
NoneNo IPR availablePANTHERPTHR23205SPLICING FACTOR 3A SUBUNIT 2coord: 4..233
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 50..84
e-value: 1.3E-5
score: 34.7
IPR031781SF3A2 domainPFAMPF16835SF3A2coord: 114..208
e-value: 4.5E-35
score: 119.9
IPR000690Matrin/U1-C, C2H2-type zinc fingerPROSITEPS50171ZF_MATRINcoord: 53..83
score: 9.196815
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 46..86

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:125100..125870 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5847.t1Ggra5847.t1Gracilaria gracilis GNS1m malemRNAtig00000068_pilon 125100..125870 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5847.t1 ID=Ggra5847.t1|Name=Ggra5847.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=257bp
MAYRDWGSKTGGGGVASKEHEALARKERLRQLAMDTVDLKNDPYFMRNHL
GTYECKLCLTLHPNEGNYLAHTQGRRHQSNLKRRAAMESQKEAAKPRAPM
AVSIRRIMHKRLKIGTPGYQITKQKHPQTGQLSLLFQLRYPQIADGLQPR
HRFMSAFEQKKERPDRRYQYLLFAAEPYETVAFKIPNMPIDKGEGTFYTN
WDQEGKTFTLQLFFEQQKHQGKANGAMDEPVKGQTMHIEKELSRPKDPFA
GIGHPM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR031781SF3A2_dom
IPR000690Matrin/U1-C_Znf_C2H2
IPR036236Znf_C2H2_sf