Ggra5847.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5847.t1
Unique NameGgra5847.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:125100..125870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705202.1
Preferred namesap62
PFAMsSF3A2,zf-met
Max annot lvl2759|Eukaryota
KEGG koko:K12826
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005686,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Evalue1.13e-99
EggNOG OGsCOG5246@1|root,KOG0227@2759|Eukaryota
Descriptionspliceosomal complex assembly
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5847Ggra5847Gracilaria gracilis GNS1m malegenetig00000068_pilon 125100..125870 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5847.t1.stop1Ggra5847.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 125100..125102 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5847.t1.CDS1Ggra5847.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 125100..125870 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5847.t1.exon1Ggra5847.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 125100..125870 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5847.t1.start1Ggra5847.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 125868..125870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5847.t1Ggra5847.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 125100..125870 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5847.t1 ID=Ggra5847.t1|Name=Ggra5847.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=257bp
MAYRDWGSKTGGGGVASKEHEALARKERLRQLAMDTVDLKNDPYFMRNHL
GTYECKLCLTLHPNEGNYLAHTQGRRHQSNLKRRAAMESQKEAAKPRAPM
AVSIRRIMHKRLKIGTPGYQITKQKHPQTGQLSLLFQLRYPQIADGLQPR
HRFMSAFEQKKERPDRRYQYLLFAAEPYETVAFKIPNMPIDKGEGTFYTN
WDQEGKTFTLQLFFEQQKHQGKANGAMDEPVKGQTMHIEKELSRPKDPFA
GIGHPM*
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spliced messenger RNA

>Ggra5847.t1 ID=Ggra5847.t1|Name=Ggra5847.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000068_pilon:125100..125870- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTACCGCGACTGGGGTTCAAAGACGGGCGGTGGTGGCGTTGCATC
CAAGGAACATGAGGCACTGGCAAGAAAGGAGCGCCTGAGGCAGCTCGCCA
TGGACACAGTCGACTTGAAGAATGACCCGTATTTCATGAGAAACCATTTG
GGAACGTATGAATGCAAGCTATGTTTAACGCTACACCCCAACGAAGGAAA
TTACCTCGCACACACACAAGGCCGCCGACATCAGAGCAATCTGAAACGCA
GAGCAGCAATGGAATCTCAGAAGGAAGCAGCCAAACCTCGTGCTCCCATG
GCCGTCTCCATACGAAGAATTATGCACAAGCGGCTCAAGATTGGAACGCC
CGGCTATCAAATTACAAAACAGAAACACCCTCAAACAGGGCAGCTTAGCT
TACTTTTTCAGCTTCGTTACCCACAAATTGCTGATGGCTTACAACCGCGA
CACCGATTCATGAGCGCTTTTGAGCAGAAGAAGGAGCGACCCGATCGAAG
ATATCAATATCTACTTTTTGCAGCGGAGCCGTATGAAACTGTGGCATTTA
AGATCCCCAACATGCCAATAGATAAAGGAGAAGGAACGTTTTATACCAAC
TGGGATCAAGAAGGGAAAACGTTTACTTTGCAGCTATTTTTCGAACAACA
GAAACATCAAGGAAAAGCCAATGGTGCGATGGATGAACCTGTTAAAGGAC
AAACCATGCACATAGAAAAAGAGCTATCACGACCGAAGGATCCATTTGCA
GGTATTGGTCACCCGATGTAA
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protein sequence of Ggra5847.t1

>Ggra5847.t1 ID=Ggra5847.t1|Name=Ggra5847.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=257bp
MAYRDWGSKTGGGGVASKEHEALARKERLRQLAMDTVDLKNDPYFMRNHL
GTYECKLCLTLHPNEGNYLAHTQGRRHQSNLKRRAAMESQKEAAKPRAPM
AVSIRRIMHKRLKIGTPGYQITKQKHPQTGQLSLLFQLRYPQIADGLQPR
HRFMSAFEQKKERPDRRYQYLLFAAEPYETVAFKIPNMPIDKGEGTFYTN
WDQEGKTFTLQLFFEQQKHQGKANGAMDEPVKGQTMHIEKELSRPKDPFA
GIGHPM*
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mRNA from alignment at tig00000068_pilon:125100..125870-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5847.t1 ID=Ggra5847.t1|Name=Ggra5847.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000068_pilon:125100..125870- (Gracilaria gracilis GNS1m male)
ATGGCGTACCGCGACTGGGGTTCAAAGACGGGCGGTGGTGGCGTTGCATC
CAAGGAACATGAGGCACTGGCAAGAAAGGAGCGCCTGAGGCAGCTCGCCA
TGGACACAGTCGACTTGAAGAATGACCCGTATTTCATGAGAAACCATTTG
GGAACGTATGAATGCAAGCTATGTTTAACGCTACACCCCAACGAAGGAAA
TTACCTCGCACACACACAAGGCCGCCGACATCAGAGCAATCTGAAACGCA
GAGCAGCAATGGAATCTCAGAAGGAAGCAGCCAAACCTCGTGCTCCCATG
GCCGTCTCCATACGAAGAATTATGCACAAGCGGCTCAAGATTGGAACGCC
CGGCTATCAAATTACAAAACAGAAACACCCTCAAACAGGGCAGCTTAGCT
TACTTTTTCAGCTTCGTTACCCACAAATTGCTGATGGCTTACAACCGCGA
CACCGATTCATGAGCGCTTTTGAGCAGAAGAAGGAGCGACCCGATCGAAG
ATATCAATATCTACTTTTTGCAGCGGAGCCGTATGAAACTGTGGCATTTA
AGATCCCCAACATGCCAATAGATAAAGGAGAAGGAACGTTTTATACCAAC
TGGGATCAAGAAGGGAAAACGTTTACTTTGCAGCTATTTTTCGAACAACA
GAAACATCAAGGAAAAGCCAATGGTGCGATGGATGAACCTGTTAAAGGAC
AAACCATGCACATAGAAAAAGAGCTATCACGACCGAAGGATCCATTTGCA
GGTATTGGTCACCCGATGTAA
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Coding sequence (CDS) from alignment at tig00000068_pilon:125100..125870-

>Ggra5847.t1 ID=Ggra5847.t1|Name=Ggra5847.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=771bp|location=Sequence derived from alignment at tig00000068_pilon:125100..125870- (Gracilaria gracilis GNS1m male)
ATGGCGTACCGCGACTGGGGTTCAAAGACGGGCGGTGGTGGCGTTGCATC
CAAGGAACATGAGGCACTGGCAAGAAAGGAGCGCCTGAGGCAGCTCGCCA
TGGACACAGTCGACTTGAAGAATGACCCGTATTTCATGAGAAACCATTTG
GGAACGTATGAATGCAAGCTATGTTTAACGCTACACCCCAACGAAGGAAA
TTACCTCGCACACACACAAGGCCGCCGACATCAGAGCAATCTGAAACGCA
GAGCAGCAATGGAATCTCAGAAGGAAGCAGCCAAACCTCGTGCTCCCATG
GCCGTCTCCATACGAAGAATTATGCACAAGCGGCTCAAGATTGGAACGCC
CGGCTATCAAATTACAAAACAGAAACACCCTCAAACAGGGCAGCTTAGCT
TACTTTTTCAGCTTCGTTACCCACAAATTGCTGATGGCTTACAACCGCGA
CACCGATTCATGAGCGCTTTTGAGCAGAAGAAGGAGCGACCCGATCGAAG
ATATCAATATCTACTTTTTGCAGCGGAGCCGTATGAAACTGTGGCATTTA
AGATCCCCAACATGCCAATAGATAAAGGAGAAGGAACGTTTTATACCAAC
TGGGATCAAGAAGGGAAAACGTTTACTTTGCAGCTATTTTTCGAACAACA
GAAACATCAAGGAAAAGCCAATGGTGCGATGGATGAACCTGTTAAAGGAC
AAACCATGCACATAGAAAAAGAGCTATCACGACCGAAGGATCCATTTGCA
GGTATTGGTCACCCGATGTAA
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