Ggra5797.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra5797.t2
Unique Name	Ggra5797.t2
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	190

Homology

[Close]

BLAST of Ggra5797.t2 vs. uniprot
Match: A0A2V3IUW8 (UBA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUW8_9FLOR)

HSP 1 Score: 234 bits (597), Expect = 3.840e-73
Identity = 122/188 (64.89%), Postives = 149/188 (79.26%), Query Frame = 0

Query:    2 GFVWVAVGLAMTAVAAAIVFVGQRERFSQVANSLGNQQEDWKTWIIPICTGGILVIVFGTLSITTLIKFFSTFSARPSLPLRTSAASEGSIREVDDLDLLYKTGKELPDDDLEDPQLPSVPPPVAIGRNKGMIDATILPNAPEQSTINRLMRQLRDMGFRNPDQNMAALQASSFDLEKASEKLANTAT 189
            GF+WVAVGLA+TA AAAIVFVGQRE F  VA  LG++   WKTW+IP+ T GIL+ VFG L+ITT  KFFST +AR ++ + T AASEGS+REV+D+DLLYK   E+ +DD++D  + +  P   +G    +ID+ ILP  P+QST++RLMRQLRDMGFRNPDQNMAALQASSFDLEKASEKLANTAT
Sbjct:  200 GFLWVAVGLAVTAAAAAIVFVGQREHFDDVARILGSENPVWKTWVIPLLTSGILIPVFGVLAITTSFKFFSTLTARYTVAMPTPAASEGSVREVEDIDLLYKMDNEIGEDDVDDDFVAADSPSANLGEYTRIIDSAILPTVPDQSTVDRLMRQLRDMGFRNPDQNMAALQASSFDLEKASEKLANTAT 387

The following BLAST results are available for this feature:

BLAST of Ggra5797.t2 vs. uniprot

BLAST of Ggra5797.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IUW8	3.840e-73	64.89	UBA domain-containing protein n=1 Tax=Gracilariops...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.8.10		coord: 145..187 e-value: 2.6E-9 score: 38.8
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 19..41
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 42..68
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..13
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 69..189
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 14..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..18
None	No IPR available	TMHMM	TMhelix		coord: 4..23
None	No IPR available	TMHMM	TMhelix		coord: 44..66
IPR015940	Ubiquitin-associated domain	PROSITE	PS50030	UBA	coord: 141..187 score: 10.354057
IPR009060	UBA-like superfamily	SUPERFAMILY	46934	UBA-like	coord: 141..186

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000935_pilon	contig	tig00000935_pilon:331982..332551 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5797.t2	Ggra5797.t2	Gracilaria gracilis GNS1m male	mRNA	tig00000935_pilon 331982..332551 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra5797.t2 ID=Ggra5797.t2|Name=Ggra5797.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=190bp
MGFVWVAVGLAMTAVAAAIVFVGQRERFSQVANSLGNQQEDWKTWIIPIC
TGGILVIVFGTLSITTLIKFFSTFSARPSLPLRTSAASEGSIREVDDLDL
LYKTGKELPDDDLEDPQLPSVPPPVAIGRNKGMIDATILPNAPEQSTINR
LMRQLRDMGFRNPDQNMAALQASSFDLEKASEKLANTAT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015940	UBA
IPR009060	UBA-like_sf