Ggra5797.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5797.t2
Unique NameGgra5797.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:331982..332551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5797Ggra5797Gracilaria gracilis GNS1m malegenetig00000935_pilon 331982..333124 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5797.t2.stop1Ggra5797.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000935_pilon 331982..331984 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5797.t2.CDS1Ggra5797.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000935_pilon 331982..332551 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5797.t2.exon1Ggra5797.t2.exon1Gracilaria gracilis GNS1m maleexontig00000935_pilon 331982..332551 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5797.t2.start1Ggra5797.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000935_pilon 332549..332551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5797.t2Ggra5797.t2Gracilaria gracilis GNS1m malepolypeptidetig00000935_pilon 331982..332551 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5797.t2 ID=Ggra5797.t2|Name=Ggra5797.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=190bp
MGFVWVAVGLAMTAVAAAIVFVGQRERFSQVANSLGNQQEDWKTWIIPIC
TGGILVIVFGTLSITTLIKFFSTFSARPSLPLRTSAASEGSIREVDDLDL
LYKTGKELPDDDLEDPQLPSVPPPVAIGRNKGMIDATILPNAPEQSTINR
LMRQLRDMGFRNPDQNMAALQASSFDLEKASEKLANTAT*
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spliced messenger RNA

>Ggra5797.t2 ID=Ggra5797.t2|Name=Ggra5797.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000935_pilon:331982..332551- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTTTGTTTGGGTGGCGGTGGGGCTTGCCATGACCGCCGTTGCGGC
CGCCATCGTCTTCGTCGGACAGAGGGAGCGCTTCAGCCAAGTTGCCAACA
GTCTCGGCAACCAACAAGAAGATTGGAAGACTTGGATCATTCCCATATGC
ACTGGCGGCATTCTCGTCATTGTGTTCGGCACTCTGTCCATCACCACTCT
CATCAAGTTCTTTTCCACTTTCAGTGCTCGCCCTTCGCTTCCCTTGCGAA
CTTCCGCCGCATCGGAGGGGTCCATCAGAGAGGTGGATGATCTTGATCTT
CTGTACAAAACCGGAAAGGAGTTACCGGACGACGACCTGGAAGATCCTCA
ACTTCCAAGTGTGCCTCCCCCCGTTGCTATCGGTCGCAACAAGGGGATGA
TCGACGCTACCATTCTGCCCAATGCCCCTGAGCAGAGCACCATTAATCGA
CTGATGCGACAGTTGCGAGATATGGGCTTCAGAAACCCTGATCAGAACAT
GGCTGCATTGCAGGCATCTTCTTTCGACCTTGAAAAGGCGAGTGAAAAGC
TTGCCAACACTGCAACATAG
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protein sequence of Ggra5797.t2

>Ggra5797.t2 ID=Ggra5797.t2|Name=Ggra5797.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=190bp
MGFVWVAVGLAMTAVAAAIVFVGQRERFSQVANSLGNQQEDWKTWIIPIC
TGGILVIVFGTLSITTLIKFFSTFSARPSLPLRTSAASEGSIREVDDLDL
LYKTGKELPDDDLEDPQLPSVPPPVAIGRNKGMIDATILPNAPEQSTINR
LMRQLRDMGFRNPDQNMAALQASSFDLEKASEKLANTAT*
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mRNA from alignment at tig00000935_pilon:331982..332551-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5797.t2 ID=Ggra5797.t2|Name=Ggra5797.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000935_pilon:331982..332551- (Gracilaria gracilis GNS1m male)
ATGGGCTTTGTTTGGGTGGCGGTGGGGCTTGCCATGACCGCCGTTGCGGC
CGCCATCGTCTTCGTCGGACAGAGGGAGCGCTTCAGCCAAGTTGCCAACA
GTCTCGGCAACCAACAAGAAGATTGGAAGACTTGGATCATTCCCATATGC
ACTGGCGGCATTCTCGTCATTGTGTTCGGCACTCTGTCCATCACCACTCT
CATCAAGTTCTTTTCCACTTTCAGTGCTCGCCCTTCGCTTCCCTTGCGAA
CTTCCGCCGCATCGGAGGGGTCCATCAGAGAGGTGGATGATCTTGATCTT
CTGTACAAAACCGGAAAGGAGTTACCGGACGACGACCTGGAAGATCCTCA
ACTTCCAAGTGTGCCTCCCCCCGTTGCTATCGGTCGCAACAAGGGGATGA
TCGACGCTACCATTCTGCCCAATGCCCCTGAGCAGAGCACCATTAATCGA
CTGATGCGACAGTTGCGAGATATGGGCTTCAGAAACCCTGATCAGAACAT
GGCTGCATTGCAGGCATCTTCTTTCGACCTTGAAAAGGCGAGTGAAAAGC
TTGCCAACACTGCAACATAG
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Coding sequence (CDS) from alignment at tig00000935_pilon:331982..332551-

>Ggra5797.t2 ID=Ggra5797.t2|Name=Ggra5797.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00000935_pilon:331982..332551- (Gracilaria gracilis GNS1m male)
ATGGGCTTTGTTTGGGTGGCGGTGGGGCTTGCCATGACCGCCGTTGCGGC
CGCCATCGTCTTCGTCGGACAGAGGGAGCGCTTCAGCCAAGTTGCCAACA
GTCTCGGCAACCAACAAGAAGATTGGAAGACTTGGATCATTCCCATATGC
ACTGGCGGCATTCTCGTCATTGTGTTCGGCACTCTGTCCATCACCACTCT
CATCAAGTTCTTTTCCACTTTCAGTGCTCGCCCTTCGCTTCCCTTGCGAA
CTTCCGCCGCATCGGAGGGGTCCATCAGAGAGGTGGATGATCTTGATCTT
CTGTACAAAACCGGAAAGGAGTTACCGGACGACGACCTGGAAGATCCTCA
ACTTCCAAGTGTGCCTCCCCCCGTTGCTATCGGTCGCAACAAGGGGATGA
TCGACGCTACCATTCTGCCCAATGCCCCTGAGCAGAGCACCATTAATCGA
CTGATGCGACAGTTGCGAGATATGGGCTTCAGAAACCCTGATCAGAACAT
GGCTGCATTGCAGGCATCTTCTTTCGACCTTGAAAAGGCGAGTGAAAAGC
TTGCCAACACTGCAACATAG
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