Ggra5797.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5797.t1
Unique NameGgra5797.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length381
Homology
[Close]
BLAST of Ggra5797.t1 vs. uniprot
Match: A0A2V3IUW8 (UBA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUW8_9FLOR)

HSP 1 Score: 439 bits (1128), Expect = 2.170e-150
Identity = 256/387 (66.15%), Postives = 303/387 (78.29%), Query Frame = 0 
Query:    1 MAASDSLLPRHVLFNAALYAGAALVYSVVIFSLETASPGEYVFFDSDQSKWRSIFNNIAIISWPLLLFGALILLAVRVGANVRRXXXXXXXXXXXXXXXXS------LSERNTSDNSIEVPRLIPSTTPPPVPLRLESAHR-EHSPHLLHHLTGKVDEERPPITRAKSSRKAKRAKSSTFHVPNGYVSVNRPQRLYAAMGFVWVAVGLAMTAVAAAIVFVGQRERFSQVANSLGNQQEDWKTWIIPICTGGILVIVFGTLSITTLIKFFSTFSARPSLPLRTSAASEGSIREVDDLDLLYKTGKELPDDDLEDPQLPSVPPPVAIGRNKGMIDATILPNAPEQSTINRLMRQLRDMGFRNPDQNMAALQASSFDLEKASEKLANTAT 380
            MA ++++LPR +LFN ALYA  AL+Y+VVIFSLE A PGEYVF DSD+SKWR++FNN AI+SWP+LLFGALIL+AVR GANVRR XXXXXXXXXXXXXXX       LS RN SDN+I    L PSTTPPPV LR ESAHR E +P L+H LT   DEE P + R KSSR+ KR++S T HVP GYVSV R QRLYAA GF+WVAVGLA+TA AAAIVFVGQRE F  VA  LG++   WKTW+IP+ T GIL+ VFG L+ITT  KFFST +AR ++ + T AASEGS+REV+D+DLLYK   E+ +DD++D  + +  P   +G    +ID+ ILP  P+QST++RLMRQLRDMGFRNPDQNMAALQASSFDLEKASEKLANTAT
Sbjct:    1 MALTETILPRPILFNGALYACLALIYTVVIFSLEAARPGEYVFSDSDESKWRTVFNNTAIVSWPVLLFGALILIAVRAGANVRRRXXXXXXXXXXXXXXXXXXXXXXLSNRNNSDNTIPNQPLPPSTTPPPVALRAESAHRHESAPDLVHTLTLNDDEENPDLLRVKSSRRVKRSRSETSHVPRGYVSVTRAQRLYAAFGFLWVAVGLAVTAAAAAIVFVGQREHFDDVARILGSENPVWKTWVIPLLTSGILIPVFGVLAITTSFKFFSTLTARYTVAMPTPAASEGSVREVEDIDLLYKMDNEIGEDDVDDDFVAADSPSANLGEYTRIIDSAILPTVPDQSTVDRLMRQLRDMGFRNPDQNMAALQASSFDLEKASEKLANTAT 387
The following BLAST results are available for this feature:
BLAST of Ggra5797.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IUW82.170e-15066.15UBA domain-containing protein n=1 Tax=Gracilariops... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.10coord: 337..378
e-value: 7.0E-9
score: 37.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..170
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 53..80
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 81..187
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..52
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 214..232
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 188..213
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 233..259
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 260..380
NoneNo IPR availableTMHMMTMhelixcoord: 12..34
NoneNo IPR availableTMHMMTMhelixcoord: 194..216
NoneNo IPR availableTMHMMTMhelixcoord: 54..76
NoneNo IPR availableTMHMMTMhelixcoord: 236..258
IPR015940Ubiquitin-associated domainPROSITEPS50030UBAcoord: 332..378
score: 10.354057
IPR009060UBA-like superfamilySUPERFAMILY46934UBA-likecoord: 333..377

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:331982..333124 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5797.t1Ggra5797.t1Gracilaria gracilis GNS1m malemRNAtig00000935_pilon 331982..333124 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5797.t1 ID=Ggra5797.t1|Name=Ggra5797.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=381bp
MAASDSLLPRHVLFNAALYAGAALVYSVVIFSLETASPGEYVFFDSDQSK
WRSIFNNIAIISWPLLLFGALILLAVRVGANVRRRRRKRSKKKKRSSSNN
SLSERNTSDNSIEVPRLIPSTTPPPVPLRLESAHREHSPHLLHHLTGKVD
EERPPITRAKSSRKAKRAKSSTFHVPNGYVSVNRPQRLYAAMGFVWVAVG
LAMTAVAAAIVFVGQRERFSQVANSLGNQQEDWKTWIIPICTGGILVIVF
GTLSITTLIKFFSTFSARPSLPLRTSAASEGSIREVDDLDLLYKTGKELP
DDDLEDPQLPSVPPPVAIGRNKGMIDATILPNAPEQSTINRLMRQLRDMG
FRNPDQNMAALQASSFDLEKASEKLANTAT*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015940UBA
IPR009060UBA-like_sf