Ggra5797.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5797.t1
Unique NameGgra5797.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length381
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:331982..333124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5797Ggra5797Gracilaria gracilis GNS1m malegenetig00000935_pilon 331982..333124 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5797.t1.stop1Ggra5797.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000935_pilon 331982..331984 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5797.t1.CDS1Ggra5797.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000935_pilon 331982..333124 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5797.t1.exon1Ggra5797.t1.exon1Gracilaria gracilis GNS1m maleexontig00000935_pilon 331982..333124 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5797.t1.start1Ggra5797.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000935_pilon 333122..333124 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5797.t1Ggra5797.t1Gracilaria gracilis GNS1m malepolypeptidetig00000935_pilon 331982..333124 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5797.t1 ID=Ggra5797.t1|Name=Ggra5797.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=381bp
MAASDSLLPRHVLFNAALYAGAALVYSVVIFSLETASPGEYVFFDSDQSK
WRSIFNNIAIISWPLLLFGALILLAVRVGANVRRRRRKRSKKKKRSSSNN
SLSERNTSDNSIEVPRLIPSTTPPPVPLRLESAHREHSPHLLHHLTGKVD
EERPPITRAKSSRKAKRAKSSTFHVPNGYVSVNRPQRLYAAMGFVWVAVG
LAMTAVAAAIVFVGQRERFSQVANSLGNQQEDWKTWIIPICTGGILVIVF
GTLSITTLIKFFSTFSARPSLPLRTSAASEGSIREVDDLDLLYKTGKELP
DDDLEDPQLPSVPPPVAIGRNKGMIDATILPNAPEQSTINRLMRQLRDMG
FRNPDQNMAALQASSFDLEKASEKLANTAT*
back to top

spliced messenger RNA

>Ggra5797.t1 ID=Ggra5797.t1|Name=Ggra5797.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000935_pilon:331982..333124- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCTCCGACAGTTTGCTGCCGCGCCACGTGCTCTTCAACGCCGC
GCTGTACGCGGGCGCCGCGTTGGTGTACAGCGTCGTCATCTTCTCGTTGG
AGACTGCCAGTCCGGGTGAGTACGTCTTCTTCGATTCGGACCAATCCAAA
TGGCGCTCCATCTTCAACAACATCGCCATCATATCGTGGCCCCTTCTCTT
GTTTGGCGCGCTCATTCTACTCGCCGTTCGTGTCGGCGCCAACGTGCGCC
GCCGACGCCGCAAGCGCTCCAAGAAGAAGAAGCGTTCTTCGTCCAACAAC
TCGCTTTCCGAACGAAACACCAGCGATAACAGTATTGAAGTGCCCCGACT
CATCCCATCCACCACCCCGCCGCCCGTGCCGTTGCGCTTGGAGAGCGCTC
ATCGTGAGCACTCTCCGCATCTGCTACACCATCTCACCGGCAAGGTCGAT
GAGGAGCGCCCGCCTATCACGCGCGCAAAGTCCTCGCGCAAGGCGAAGCG
AGCCAAGTCAAGTACCTTTCACGTTCCCAATGGCTACGTGTCCGTTAATC
GCCCGCAACGTTTGTACGCTGCGATGGGCTTTGTTTGGGTGGCGGTGGGG
CTTGCCATGACCGCCGTTGCGGCCGCCATCGTCTTCGTCGGACAGAGGGA
GCGCTTCAGCCAAGTTGCCAACAGTCTCGGCAACCAACAAGAAGATTGGA
AGACTTGGATCATTCCCATATGCACTGGCGGCATTCTCGTCATTGTGTTC
GGCACTCTGTCCATCACCACTCTCATCAAGTTCTTTTCCACTTTCAGTGC
TCGCCCTTCGCTTCCCTTGCGAACTTCCGCCGCATCGGAGGGGTCCATCA
GAGAGGTGGATGATCTTGATCTTCTGTACAAAACCGGAAAGGAGTTACCG
GACGACGACCTGGAAGATCCTCAACTTCCAAGTGTGCCTCCCCCCGTTGC
TATCGGTCGCAACAAGGGGATGATCGACGCTACCATTCTGCCCAATGCCC
CTGAGCAGAGCACCATTAATCGACTGATGCGACAGTTGCGAGATATGGGC
TTCAGAAACCCTGATCAGAACATGGCTGCATTGCAGGCATCTTCTTTCGA
CCTTGAAAAGGCGAGTGAAAAGCTTGCCAACACTGCAACATAG
back to top

protein sequence of Ggra5797.t1

>Ggra5797.t1 ID=Ggra5797.t1|Name=Ggra5797.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=381bp
MAASDSLLPRHVLFNAALYAGAALVYSVVIFSLETASPGEYVFFDSDQSK
WRSIFNNIAIISWPLLLFGALILLAVRVGANVRRRRRKRSKKKKRSSSNN
SLSERNTSDNSIEVPRLIPSTTPPPVPLRLESAHREHSPHLLHHLTGKVD
EERPPITRAKSSRKAKRAKSSTFHVPNGYVSVNRPQRLYAAMGFVWVAVG
LAMTAVAAAIVFVGQRERFSQVANSLGNQQEDWKTWIIPICTGGILVIVF
GTLSITTLIKFFSTFSARPSLPLRTSAASEGSIREVDDLDLLYKTGKELP
DDDLEDPQLPSVPPPVAIGRNKGMIDATILPNAPEQSTINRLMRQLRDMG
FRNPDQNMAALQASSFDLEKASEKLANTAT*
back to top

mRNA from alignment at tig00000935_pilon:331982..333124-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5797.t1 ID=Ggra5797.t1|Name=Ggra5797.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000935_pilon:331982..333124- (Gracilaria gracilis GNS1m male)
ATGGCCGCCTCCGACAGTTTGCTGCCGCGCCACGTGCTCTTCAACGCCGC
GCTGTACGCGGGCGCCGCGTTGGTGTACAGCGTCGTCATCTTCTCGTTGG
AGACTGCCAGTCCGGGTGAGTACGTCTTCTTCGATTCGGACCAATCCAAA
TGGCGCTCCATCTTCAACAACATCGCCATCATATCGTGGCCCCTTCTCTT
GTTTGGCGCGCTCATTCTACTCGCCGTTCGTGTCGGCGCCAACGTGCGCC
GCCGACGCCGCAAGCGCTCCAAGAAGAAGAAGCGTTCTTCGTCCAACAAC
TCGCTTTCCGAACGAAACACCAGCGATAACAGTATTGAAGTGCCCCGACT
CATCCCATCCACCACCCCGCCGCCCGTGCCGTTGCGCTTGGAGAGCGCTC
ATCGTGAGCACTCTCCGCATCTGCTACACCATCTCACCGGCAAGGTCGAT
GAGGAGCGCCCGCCTATCACGCGCGCAAAGTCCTCGCGCAAGGCGAAGCG
AGCCAAGTCAAGTACCTTTCACGTTCCCAATGGCTACGTGTCCGTTAATC
GCCCGCAACGTTTGTACGCTGCGATGGGCTTTGTTTGGGTGGCGGTGGGG
CTTGCCATGACCGCCGTTGCGGCCGCCATCGTCTTCGTCGGACAGAGGGA
GCGCTTCAGCCAAGTTGCCAACAGTCTCGGCAACCAACAAGAAGATTGGA
AGACTTGGATCATTCCCATATGCACTGGCGGCATTCTCGTCATTGTGTTC
GGCACTCTGTCCATCACCACTCTCATCAAGTTCTTTTCCACTTTCAGTGC
TCGCCCTTCGCTTCCCTTGCGAACTTCCGCCGCATCGGAGGGGTCCATCA
GAGAGGTGGATGATCTTGATCTTCTGTACAAAACCGGAAAGGAGTTACCG
GACGACGACCTGGAAGATCCTCAACTTCCAAGTGTGCCTCCCCCCGTTGC
TATCGGTCGCAACAAGGGGATGATCGACGCTACCATTCTGCCCAATGCCC
CTGAGCAGAGCACCATTAATCGACTGATGCGACAGTTGCGAGATATGGGC
TTCAGAAACCCTGATCAGAACATGGCTGCATTGCAGGCATCTTCTTTCGA
CCTTGAAAAGGCGAGTGAAAAGCTTGCCAACACTGCAACATAG
back to top

Coding sequence (CDS) from alignment at tig00000935_pilon:331982..333124-

>Ggra5797.t1 ID=Ggra5797.t1|Name=Ggra5797.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1143bp|location=Sequence derived from alignment at tig00000935_pilon:331982..333124- (Gracilaria gracilis GNS1m male)
ATGGCCGCCTCCGACAGTTTGCTGCCGCGCCACGTGCTCTTCAACGCCGC
GCTGTACGCGGGCGCCGCGTTGGTGTACAGCGTCGTCATCTTCTCGTTGG
AGACTGCCAGTCCGGGTGAGTACGTCTTCTTCGATTCGGACCAATCCAAA
TGGCGCTCCATCTTCAACAACATCGCCATCATATCGTGGCCCCTTCTCTT
GTTTGGCGCGCTCATTCTACTCGCCGTTCGTGTCGGCGCCAACGTGCGCC
GCCGACGCCGCAAGCGCTCCAAGAAGAAGAAGCGTTCTTCGTCCAACAAC
TCGCTTTCCGAACGAAACACCAGCGATAACAGTATTGAAGTGCCCCGACT
CATCCCATCCACCACCCCGCCGCCCGTGCCGTTGCGCTTGGAGAGCGCTC
ATCGTGAGCACTCTCCGCATCTGCTACACCATCTCACCGGCAAGGTCGAT
GAGGAGCGCCCGCCTATCACGCGCGCAAAGTCCTCGCGCAAGGCGAAGCG
AGCCAAGTCAAGTACCTTTCACGTTCCCAATGGCTACGTGTCCGTTAATC
GCCCGCAACGTTTGTACGCTGCGATGGGCTTTGTTTGGGTGGCGGTGGGG
CTTGCCATGACCGCCGTTGCGGCCGCCATCGTCTTCGTCGGACAGAGGGA
GCGCTTCAGCCAAGTTGCCAACAGTCTCGGCAACCAACAAGAAGATTGGA
AGACTTGGATCATTCCCATATGCACTGGCGGCATTCTCGTCATTGTGTTC
GGCACTCTGTCCATCACCACTCTCATCAAGTTCTTTTCCACTTTCAGTGC
TCGCCCTTCGCTTCCCTTGCGAACTTCCGCCGCATCGGAGGGGTCCATCA
GAGAGGTGGATGATCTTGATCTTCTGTACAAAACCGGAAAGGAGTTACCG
GACGACGACCTGGAAGATCCTCAACTTCCAAGTGTGCCTCCCCCCGTTGC
TATCGGTCGCAACAAGGGGATGATCGACGCTACCATTCTGCCCAATGCCC
CTGAGCAGAGCACCATTAATCGACTGATGCGACAGTTGCGAGATATGGGC
TTCAGAAACCCTGATCAGAACATGGCTGCATTGCAGGCATCTTCTTTCGA
CCTTGAAAAGGCGAGTGAAAAGCTTGCCAACACTGCAACATAG
back to top