Ggra5772.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5772.t1
Unique NameGgra5772.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length262
Homology
[Close]
BLAST of Ggra5772.t1 vs. uniprot
Match: A0A2V3J1L9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1L9_9FLOR)

HSP 1 Score: 228 bits (581), Expect = 1.340e-64
Identity = 131/254 (51.57%), Postives = 166/254 (65.35%), Query Frame = 0 
Query:    2 GSSEHREERVLFWLCTELVPPGAVLAGCPHPGADMLAISCNADVILLALVPSKDSLVEITRASVRTLVMSLSVQEDMICVVDRKDSVAFFQIHAGVEKLVRDRSDFRKRVVSDAVLIDRGQMIGVDRLGNLFSLGYEELDTLRRVEVLKKDGSVNSPYISVVMSMKTEDDSIVAHQDSASQHAIPPTLGQEYDEMPPELRSDYSATTPEASGLLTPSDNMEVGNEIGDAHSIEEVHM-EENENVDNEENESSDV 254
            GSSE  E+RV F LC E+V PGAVLAG PHP AD+ A+SCN  VILLAL+P++ +L+E+ RASVRTLV+SLS+ ED++CVVDRKDSV FFQIH    KLVRDRSD RKR+VSDAVLIDR QMIGVDR+G LFSLGYEE D  +R    ++ G+V SP+I ++++   ED     +    S    PP LG+EYD M     SD    T E +      D  +  N  GD    + + M  +N+ +DN   +  D 
Sbjct: 1237 GSSEASEDRVRFRLCCEIVLPGAVLAGAPHPTADLFALSCNDQVILLALLPTETALIEVARASVRTLVVSLSIHEDIVCVVDRKDSVTFFQIHTKQRKLVRDRSDHRKRLVSDAVLIDRTQMIGVDRVGALFSLGYEEGDAPKRSVFQERSGAVISPFIPILLAAGPEDFGEEINHALRSPEEPPPALGEEYDVMNVGSESDTPPETTEQA------DETDASNGTGDQQDEQGMQMLVDNQVMDNVNEDDGDA 1484
The following BLAST results are available for this feature:
BLAST of Ggra5772.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J1L91.340e-6451.57Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 230..250
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..261
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..219
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..29
score: 5.0
IPR004871Cleavage/polyadenylation specificity factor, A subunit, C-terminalPFAMPF03178CPSF_Acoord: 34..140
e-value: 4.0E-7
score: 29.7
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 5..184
e-value: 1.4E-16
score: 62.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:150993..151778 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5772.t1Ggra5772.t1Gracilaria gracilis GNS1m malemRNAtig00000935_pilon 150993..151778 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5772.t1 ID=Ggra5772.t1|Name=Ggra5772.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=262bp
MGSSEHREERVLFWLCTELVPPGAVLAGCPHPGADMLAISCNADVILLAL
VPSKDSLVEITRASVRTLVMSLSVQEDMICVVDRKDSVAFFQIHAGVEKL
VRDRSDFRKRVVSDAVLIDRGQMIGVDRLGNLFSLGYEELDTLRRVEVLK
KDGSVNSPYISVVMSMKTEDDSIVAHQDSASQHAIPPTLGQEYDEMPPEL
RSDYSATTPEASGLLTPSDNMEVGNEIGDAHSIEEVHMEENENVDNEENE
SSDVPNVGTTK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004871Cleavage/polyA-sp_fac_asu_C
IPR015943WD40/YVTN_repeat-like_dom_sf