Ggra5744.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5744.t1
Unique NameGgra5744.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length216
Homology
BLAST of Ggra5744.t1 vs. uniprot
Match: A0A2V3IEH5 (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEH5_9FLOR)

HSP 1 Score: 348 bits (894), Expect = 3.010e-111
Identity = 169/200 (84.50%), Postives = 181/200 (90.50%), Query Frame = 0
Query:    1 MSVILGRAMPDVRDGLKTVHRCILYAMHVLGLSPTCQFRKCARVVGEVLGNYHPHGDTAVYDALVRMAQSFSMSVPLVDGHGNFGSTDGDPPAAMRYTDCKLSRLATYTFLSDIDCNTVSFKPNFDGSENEPLVLPVKLPNLFVNGGSGIAVAMATNTPPHNLIELVSALIALIRDPNIAHEQLFELVPAPDFLIGGQIL 200
            MSVILGRAMPDVRDGLK VHR ILYAMHVLGL+P+ QFRKCARVVGEVLG YHPHGDTAVYDALVRMAQ FSMS+PL++GHGNFGSTDGDPPAAMRYT+CKLSRLAT TFLSDIDCNTVSF PNFD SE+EPLVLPVK+PNL VNGGSGIAV MATN PPHNL ELVSAL ALI DP+++ E+LFE VPAPDF  GG IL
Sbjct:   83 MSVILGRAMPDVRDGLKPVHRRILYAMHVLGLAPSGQFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQPFSMSIPLINGHGNFGSTDGDPPAAMRYTECKLSRLATDTFLSDIDCNTVSFMPNFDSSEHEPLVLPVKVPNLLVNGGSGIAVGMATNIPPHNLGELVSALTALIEDPDVSDERLFEFVPAPDFPTGGLIL 282          
BLAST of Ggra5744.t1 vs. uniprot
Match: R7QQ20 (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQ20_CHOCR)

HSP 1 Score: 307 bits (787), Expect = 2.180e-95
Identity = 150/200 (75.00%), Postives = 168/200 (84.00%), Query Frame = 0
Query:    1 MSVILGRAMPDVRDGLKTVHRCILYAMHVLGLSPTCQFRKCARVVGEVLGNYHPHGDTAVYDALVRMAQSFSMSVPLVDGHGNFGSTDGDPPAAMRYTDCKLSRLATYTFLSDIDCNTVSFKPNFDGSENEPLVLPVKLPNLFVNGGSGIAVAMATNTPPHNLIELVSALIALIRDPNIAHEQLFELVPAPDFLIGGQIL 200
            MSVILGRAMPDVRDGLK VHR IL+AMH LGLSP  QFRK ARVVGEVLG YHPHGDTAVYDALVRMAQ F+MS+PLV+GHGNFGSTDGDP AAMRYT+CKL+ L    FL+D+  +TVS+ PNFDGSE+EPLVLP K+PNL VNG SGIAV MATN PPHNL E+V+AL A+I DP ++ + L  LVPAPDF  GGQIL
Sbjct:  118 MSVILGRAMPDVRDGLKPVHRRILFAMHELGLSPGGQFRKSARVVGEVLGKYHPHGDTAVYDALVRMAQPFAMSIPLVNGHGNFGSTDGDPAAAMRYTECKLAHLTRDVFLADMGRDTVSYSPNFDGSESEPLVLPAKVPNLLVNGSSGIAVGMATNIPPHNLGEVVAALKAIIADPELSDDDLLALVPAPDFPTGGQIL 317          
BLAST of Ggra5744.t1 vs. uniprot
Match: A0A7S0JD38 (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JD38_9EUKA)

HSP 1 Score: 280 bits (717), Expect = 1.940e-92
Identity = 137/200 (68.50%), Postives = 156/200 (78.00%), Query Frame = 0
Query:    1 MSVILGRAMPDVRDGLKTVHRCILYAMHVLGLSPTCQFRKCARVVGEVLGNYHPHGDTAVYDALVRMAQSFSMSVPLVDGHGNFGSTDGDPPAAMRYTDCKLSRLATYTFLSDIDCNTVSFKPNFDGSENEPLVLPVKLPNLFVNGGSGIAVAMATNTPPHNLIELVSALIALIRDPNIAHEQLFELVPAPDFLIGGQIL 200
            MSVI+ RA+PD RDGLK VHR ILYAMHVL L P    RKCARVVGEVLG YHPHGD++VY+ALVRMAQ FS+  PLVDGHGNFGS D DPPAAMRYT+C+LS+LA  + L+DI+ +TV F  NFD SE EP+V P KLP L +NG +GIAV MATN PPHNL ELV AL AL+RD  +A E LF LV APDF  GG I+
Sbjct:   38 MSVIMSRALPDARDGLKPVHRRILYAMHVLNLQPDTPHRKCARVVGEVLGKYHPHGDSSVYEALVRMAQPFSLRAPLVDGHGNFGSIDPDPPAAMRYTECRLSKLARDSLLADIELDTVDFVDNFDASEREPVVFPAKLPLLLLNGAAGIAVGMATNCPPHNLGELVDALQALLRDRTVADEVLFSLVRAPDFPSGGTIM 237          
BLAST of Ggra5744.t1 vs. uniprot
Match: A0A7S1TC99 (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TC99_9RHOD)

HSP 1 Score: 285 bits (730), Expect = 2.830e-92
Identity = 136/200 (68.00%), Postives = 159/200 (79.50%), Query Frame = 0
Query:    1 MSVILGRAMPDVRDGLKTVHRCILYAMHVLGLSPTCQFRKCARVVGEVLGNYHPHGDTAVYDALVRMAQSFSMSVPLVDGHGNFGSTDGDPPAAMRYTDCKLSRLATYTFLSDIDCNTVSFKPNFDGSENEPLVLPVKLPNLFVNGGSGIAVAMATNTPPHNLIELVSALIALIRDPNIAHEQLFELVPAPDFLIGGQIL 200
            MSVILGRA+PD+RDGLK VHR IL+AMH L L     +RKCARVVGEVLG YHPHG+TA+YD+LVRMAQ FS+ VPLV GHGNFGSTDGDPPAAMRYT+C+LS  A    L DI+  TV F  NFDGS  EP+VLP ++PNL +NG SGIAV MATN PP NL+EL+ AL+A+IRDP+++   L EL+P PDF  GGQIL
Sbjct:  124 MSVILGRALPDIRDGLKPVHRRILFAMHELRLVADGPYRKCARVVGEVLGKYHPHGETAIYDSLVRMAQDFSLGVPLVAGHGNFGSTDGDPPAAMRYTECRLSSFAQACLLEDIEMETVDFLDNFDGSLQEPVVLPSRVPNLLLNGSSGIAVGMATNIPPFNLLELLEALVAMIRDPHVSDAVLMELLPGPDFPTGGQIL 323          
BLAST of Ggra5744.t1 vs. uniprot
Match: DNA topoisomerase (ATP-hydrolyzing) subunit A n=1 Tax=Cyanobacteria bacterium SBC TaxID=2821503 RepID=UPI000B32D11A (DNA topoisomerase (ATP-hydrolyzing) subunit A n=1 Tax=Cyanobacteria bacterium SBC TaxID=2821503 RepID=UPI000B32D11A)

HSP 1 Score: 296 bits (759), Expect = 4.070e-92
Identity = 141/200 (70.50%), Postives = 160/200 (80.00%), Query Frame = 0
Query:    1 MSVILGRAMPDVRDGLKTVHRCILYAMHVLGLSPTCQFRKCARVVGEVLGNYHPHGDTAVYDALVRMAQSFSMSVPLVDGHGNFGSTDGDPPAAMRYTDCKLSRLATYTFLSDIDCNTVSFKPNFDGSENEPLVLPVKLPNLFVNGGSGIAVAMATNTPPHNLIELVSALIALIRDPNIAHEQLFELVPAPDFLIGGQIL 200
            MSVI+GRA+PD RDGLK VHR ILYAMH LGL+P   FRKCARVVGEVLG YHPHGDTAVYDALVRMAQ FSM  PLV+GHGNFGS D DPPAAMRYT+ +L RL+T + L DID  TV F  NFDGS+ EP+VLP +LP L +NG SGIAV MATN PPHNL EL+  LIAL+RDP++ + +L E +P PDF  GGQIL
Sbjct:   26 MSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRAPLVEGHGNFGSVDNDPPAAMRYTESRLQRLSTDSLLQDIDSETVDFADNFDGSQQEPVVLPARLPQLLLNGSSGIAVGMATNIPPHNLGELIDGLIALVRDPDLDNARLMEYIPGPDFPTGGQIL 225          
BLAST of Ggra5744.t1 vs. uniprot
Match: A0A6P0VQR9 (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A6P0VQR9_9CYAN)

HSP 1 Score: 285 bits (728), Expect = 8.830e-92
Identity = 134/200 (67.00%), Postives = 155/200 (77.50%), Query Frame = 0
Query:    1 MSVILGRAMPDVRDGLKTVHRCILYAMHVLGLSPTCQFRKCARVVGEVLGNYHPHGDTAVYDALVRMAQSFSMSVPLVDGHGNFGSTDGDPPAAMRYTDCKLSRLATYTFLSDIDCNTVSFKPNFDGSENEPLVLPVKLPNLFVNGGSGIAVAMATNTPPHNLIELVSALIALIRDPNIAHEQLFELVPAPDFLIGGQIL 200
            MSVI+GRA+PD RDGLK VHR IL+AMH LGL+P   FRKCARVVGEVLG YHPHGDTAVYDALVRMAQ FSM +PL++GHGNFGS D DPPAAMRYT+C+L  +AT   L DI+  TV F  NFDGS+ EP VLP ++P L +NG SGIAV MATN PPHNL EL+  L+ALI +P I   +L + +P PDF  G QIL
Sbjct:   26 MSVIVGRALPDARDGLKPVHRRILFAMHELGLTPDRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRLPLINGHGNFGSVDNDPPAAMRYTECRLQAIATDALLRDIESETVDFIDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIHNPEITDLELMQYIPGPDFPTGSQIL 225          
BLAST of Ggra5744.t1 vs. uniprot
Match: B4VPJ9 (DNA gyrase subunit A n=3 Tax=Coleofasciculus chthonoplastes TaxID=64178 RepID=B4VPJ9_9CYAN)

HSP 1 Score: 294 bits (752), Expect = 3.050e-91
Identity = 140/206 (67.96%), Postives = 161/206 (78.16%), Query Frame = 0
Query:    1 MSVILGRAMPDVRDGLKTVHRCILYAMHVLGLSPTCQFRKCARVVGEVLGNYHPHGDTAVYDALVRMAQSFSMSVPLVDGHGNFGSTDGDPPAAMRYTDCKLSRLATYTFLSDIDCNTVSFKPNFDGSENEPLVLPVKLPNLFVNGGSGIAVAMATNTPPHNLIELVSALIALIRDPNIAHEQLFELVPAPDFLIGGQILVRRARK 206
            MSVI+GRA+PD RDGLK VHR ILYAMH LGL+P   FRKCARVVGEVLG YHPHGDTAVYDALVRMAQ FSM  PL++GHGNFGS D DPPAAMRYT+C+L  LAT + L DI+  TV F  NFDGS+ EP+VLP ++P + +NG SGIAV MATN PPHNL ELV  L+ALI +P I  ++L + +PAPDF  GGQIL R   K
Sbjct:    1 MSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQSLATDSLLRDIESETVDFLDNFDGSQQEPIVLPARVPQILLNGSSGIAVGMATNIPPHNLGELVDGLVALIHNPEITEKELMQYIPAPDFPTGGQILGRSGIK 206          
BLAST of Ggra5744.t1 vs. uniprot
Match: A0A352APN8 (DNA gyrase subunit A n=1 Tax=Cyanobacteria bacterium UBA9273 TaxID=2055791 RepID=A0A352APN8_9CYAN)

HSP 1 Score: 293 bits (751), Expect = 6.270e-91
Identity = 141/207 (68.12%), Postives = 159/207 (76.81%), Query Frame = 0
Query:    1 MSVILGRAMPDVRDGLKTVHRCILYAMHVLGLSPTCQFRKCARVVGEVLGNYHPHGDTAVYDALVRMAQSFSMSVPLVDGHGNFGSTDGDPPAAMRYTDCKLSRLATYTFLSDIDCNTVSFKPNFDGSENEPLVLPVKLPNLFVNGGSGIAVAMATNTPPHNLIELVSALIALIRDPNIAHEQLFELVPAPDFLIGGQILVRRARKK 207
            MSVI+GRA+PD RDGLK VHR ILYAMH LGLSP   FRKCARVVGEVLG YHPHGDTAVYDALVRMAQ FSM +PL++GHGNFGS D DPPAAMRYT+C+L  +AT   L DI+  TV F  NFDGS+ EP VLP ++P L +NG SGIAV MATN PPHNL EL+  L+ALIR+P I   QL   +P PDF  GGQIL   A K+
Sbjct:   26 MSVIVGRALPDARDGLKPVHRRILYAMHELGLSPDRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRLPLINGHGNFGSVDNDPPAAMRYTECRLKSIATDALLRDIESETVDFIDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIRNPEITDTQLMRYIPGPDFPTGGQILGTSAIKE 232          
BLAST of Ggra5744.t1 vs. uniprot
Match: A0A3M1T295 (DNA gyrase subunit A n=1 Tax=Cyanobacteria bacterium J055 TaxID=2420338 RepID=A0A3M1T295_9CYAN)

HSP 1 Score: 293 bits (751), Expect = 6.730e-91
Identity = 141/200 (70.50%), Postives = 156/200 (78.00%), Query Frame = 0
Query:    1 MSVILGRAMPDVRDGLKTVHRCILYAMHVLGLSPTCQFRKCARVVGEVLGNYHPHGDTAVYDALVRMAQSFSMSVPLVDGHGNFGSTDGDPPAAMRYTDCKLSRLATYTFLSDIDCNTVSFKPNFDGSENEPLVLPVKLPNLFVNGGSGIAVAMATNTPPHNLIELVSALIALIRDPNIAHEQLFELVPAPDFLIGGQIL 200
            MSVI+GRA+PDVRDGLK VHR ILYAMH LGL P   FRKCARVVGEVLG YHPHGDTAVYDALVRMAQ FSM  PL++GHGNFGS D DPPAAMRYT+C+L  L+    L DID  TV F  NFDGS+ EPLVLP ++P L +NG SGIAV MATN PPHNL ELV  LIALIR+P +   QL + +P PDF  GGQIL
Sbjct:   26 MSVIVGRALPDVRDGLKPVHRRILYAMHELGLMPDRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQALSCDALLQDIDSETVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIPPHNLGELVDGLIALIRNPELTDTQLMQYIPGPDFPTGGQIL 225          
BLAST of Ggra5744.t1 vs. uniprot
Match: A0A1Z9JEG1 (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=Cyanobacteria bacterium TMED177 TaxID=1986677 RepID=A0A1Z9JEG1_9CYAN)

HSP 1 Score: 286 bits (732), Expect = 8.020e-91
Identity = 135/202 (66.83%), Postives = 158/202 (78.22%), Query Frame = 0
Query:    1 MSVILGRAMPDVRDGLKTVHRCILYAMHVLGLSPTCQFRKCARVVGEVLGNYHPHGDTAVYDALVRMAQSFSMSVPLVDGHGNFGSTDGDPPAAMRYTDCKLSRLATYTFLSDIDCNTVSFKPNFDGSENEPLVLPVKLPNLFVNGGSGIAVAMATNTPPHNLIELVSALIALIRDPNIAHEQLFELVPAPDFLIGGQILVR 202
            MSVI+GRA+PD RDGLK VHR ILYAM+ LGL+    +RKCARVVGEVLG YHPHGDTAVYDALVRMAQ FSMS+PL+DGHGNFGS D DPPAAMRYT+ +L  L T + L DI+  TV F  NFDGS+ EP VLP ++P L +NG +GIAV MATN PPHNL EL+S L+ALI +P  + ++L  L+P PDF  GGQIL R
Sbjct:   37 MSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESRLQSLTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPHNLNELISGLLALIENPEXSEQELIRLIPGPDFPTGGQILGR 238          
The following BLAST results are available for this feature:
BLAST of Ggra5744.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IEH53.010e-11184.50DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Gracil... [more]
R7QQ202.180e-9575.00DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chondr... [more]
A0A7S0JD381.940e-9268.50Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S1TC992.830e-9268.00Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
DNA topoisomerase (ATP-hydrolyzing) subunit A n=1 Tax=Cyanobacteria bacterium SBC TaxID=2821503 RepID=UPI000B32D11A4.070e-9270.50DNA topoisomerase (ATP-hydrolyzing) subunit A n=1 ... [more]
A0A6P0VQR98.830e-9267.00DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=2... [more]
B4VPJ93.050e-9167.96DNA gyrase subunit A n=3 Tax=Coleofasciculus chtho... [more]
A0A352APN86.270e-9168.12DNA gyrase subunit A n=1 Tax=Cyanobacteria bacteri... [more]
A0A3M1T2956.730e-9170.50DNA gyrase subunit A n=1 Tax=Cyanobacteria bacteri... [more]
A0A1Z9JEG18.020e-9166.83DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002205DNA topoisomerase, type IIA, domain ASMARTSM00434topIV4coord: 1..215
e-value: 1.4E-14
score: 16.4
IPR002205DNA topoisomerase, type IIA, domain APFAMPF00521DNA_topoisoIVcoord: 7..203
e-value: 5.2E-78
score: 262.8
IPR013758DNA topoisomerase, type IIA, domain A, alpha-betaGENE3D3.90.199.10Topoisomerase II, domain 5coord: 4..214
e-value: 4.5E-93
score: 313.7
NoneNo IPR availablePANTHERPTHR43493DNA GYRASE/TOPOISOMERASE SUBUNIT Acoord: 1..202
IPR013760DNA topoisomerase, type IIA-like domain superfamilySUPERFAMILY56719Type II DNA topoisomerasecoord: 6..202

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000897_piloncontigtig00000897_pilon:490392..491039 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5744.t1Ggra5744.t1Gracilaria gracilis GNS1m malemRNAtig00000897_pilon 490392..491039 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5744.t1 ID=Ggra5744.t1|Name=Ggra5744.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=216bp
MSVILGRAMPDVRDGLKTVHRCILYAMHVLGLSPTCQFRKCARVVGEVLG
NYHPHGDTAVYDALVRMAQSFSMSVPLVDGHGNFGSTDGDPPAAMRYTDC
KLSRLATYTFLSDIDCNTVSFKPNFDGSENEPLVLPVKLPNLFVNGGSGI
AVAMATNTPPHNLIELVSALIALIRDPNIAHEQLFELVPAPDFLIGGQIL
VRRARKKCIELVADV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002205Topo_IIA_dom_A
IPR013758Topo_IIA_A/C_ab
IPR013760Topo_IIA-like_dom_sf