Ggra5744.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5744.t1
Unique NameGgra5744.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length216
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000897_piloncontigtig00000897_pilon:490392..491039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog118168.MC7420_5515
Preferred namegyrA
PFAMsDNA_gyraseA_C,DNA_topoisoIV
Max annot lvl1117|Cyanobacteria
KEGG koko:K02469
Evalue4.04e-91
EggNOG OGsCOG0188@1|root,COG0188@2|Bacteria,1G1RQ@1117|Cyanobacteria,1H8XT@1150|Oscillatoriales
EC5.99.1.3
DescriptionA type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
COG categoryL
BRITEko00000,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5744Ggra5744Gracilaria gracilis GNS1m malegenetig00000897_pilon 490392..491039 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5744.t1.start1Ggra5744.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000897_pilon 490392..490394 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5744.t1.CDS1Ggra5744.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000897_pilon 490392..491039 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5744.t1.exon1Ggra5744.t1.exon1Gracilaria gracilis GNS1m maleexontig00000897_pilon 490392..491039 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5744.t1.stop1Ggra5744.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000897_pilon 491037..491039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5744.t1Ggra5744.t1Gracilaria gracilis GNS1m malepolypeptidetig00000897_pilon 490392..491039 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5744.t1 ID=Ggra5744.t1|Name=Ggra5744.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=216bp
MSVILGRAMPDVRDGLKTVHRCILYAMHVLGLSPTCQFRKCARVVGEVLG
NYHPHGDTAVYDALVRMAQSFSMSVPLVDGHGNFGSTDGDPPAAMRYTDC
KLSRLATYTFLSDIDCNTVSFKPNFDGSENEPLVLPVKLPNLFVNGGSGI
AVAMATNTPPHNLIELVSALIALIRDPNIAHEQLFELVPAPDFLIGGQIL
VRRARKKCIELVADV*
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spliced messenger RNA

>Ggra5744.t1 ID=Ggra5744.t1|Name=Ggra5744.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=648bp|location=Sequence derived from alignment at tig00000897_pilon:490392..491039+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGTCATTCTAGGACGCGCCATGCCAGACGTGCGTGACGGACTGAA
AACGGTGCATCGTTGTATCCTGTATGCCATGCATGTGCTTGGCTTAAGTC
CCACCTGTCAGTTTCGCAAGTGTGCGCGTGTGGTCGGAGAGGTTCTTGGA
AATTATCATCCTCATGGCGACACCGCAGTTTATGATGCACTTGTTCGCAT
GGCTCAGTCTTTCTCCATGTCAGTTCCTCTCGTAGACGGTCACGGAAATT
TCGGTTCCACAGATGGAGATCCTCCTGCTGCTATGCGATATACTGATTGT
AAACTGTCTCGTCTCGCCACTTACACATTTCTCTCTGACATTGATTGCAA
CACCGTTTCTTTCAAGCCGAATTTTGATGGTTCTGAGAACGAACCGCTTG
TTCTGCCTGTCAAGCTTCCCAATCTCTTCGTCAACGGAGGTTCTGGTATT
GCTGTCGCCATGGCAACCAATACCCCGCCACACAACCTCATTGAACTTGT
ATCCGCCCTAATTGCGCTCATAAGAGATCCCAACATTGCCCACGAACAGT
TGTTCGAACTGGTACCGGCTCCAGACTTTCTCATAGGTGGGCAGATTCTG
GTACGAAGGGCGCGCAAGAAATGTATCGAACTGGTCGCGGACGTGTAA
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protein sequence of Ggra5744.t1

>Ggra5744.t1 ID=Ggra5744.t1|Name=Ggra5744.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=216bp
MSVILGRAMPDVRDGLKTVHRCILYAMHVLGLSPTCQFRKCARVVGEVLG
NYHPHGDTAVYDALVRMAQSFSMSVPLVDGHGNFGSTDGDPPAAMRYTDC
KLSRLATYTFLSDIDCNTVSFKPNFDGSENEPLVLPVKLPNLFVNGGSGI
AVAMATNTPPHNLIELVSALIALIRDPNIAHEQLFELVPAPDFLIGGQIL
VRRARKKCIELVADV*
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mRNA from alignment at tig00000897_pilon:490392..491039+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5744.t1 ID=Ggra5744.t1|Name=Ggra5744.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=648bp|location=Sequence derived from alignment at tig00000897_pilon:490392..491039+ (Gracilaria gracilis GNS1m male)
ATGTCTGTCATTCTAGGACGCGCCATGCCAGACGTGCGTGACGGACTGAA
AACGGTGCATCGTTGTATCCTGTATGCCATGCATGTGCTTGGCTTAAGTC
CCACCTGTCAGTTTCGCAAGTGTGCGCGTGTGGTCGGAGAGGTTCTTGGA
AATTATCATCCTCATGGCGACACCGCAGTTTATGATGCACTTGTTCGCAT
GGCTCAGTCTTTCTCCATGTCAGTTCCTCTCGTAGACGGTCACGGAAATT
TCGGTTCCACAGATGGAGATCCTCCTGCTGCTATGCGATATACTGATTGT
AAACTGTCTCGTCTCGCCACTTACACATTTCTCTCTGACATTGATTGCAA
CACCGTTTCTTTCAAGCCGAATTTTGATGGTTCTGAGAACGAACCGCTTG
TTCTGCCTGTCAAGCTTCCCAATCTCTTCGTCAACGGAGGTTCTGGTATT
GCTGTCGCCATGGCAACCAATACCCCGCCACACAACCTCATTGAACTTGT
ATCCGCCCTAATTGCGCTCATAAGAGATCCCAACATTGCCCACGAACAGT
TGTTCGAACTGGTACCGGCTCCAGACTTTCTCATAGGTGGGCAGATTCTG
GTACGAAGGGCGCGCAAGAAATGTATCGAACTGGTCGCGGACGTGTAA
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Coding sequence (CDS) from alignment at tig00000897_pilon:490392..491039+

>Ggra5744.t1 ID=Ggra5744.t1|Name=Ggra5744.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=648bp|location=Sequence derived from alignment at tig00000897_pilon:490392..491039+ (Gracilaria gracilis GNS1m male)
ATGTCTGTCATTCTAGGACGCGCCATGCCAGACGTGCGTGACGGACTGAA
AACGGTGCATCGTTGTATCCTGTATGCCATGCATGTGCTTGGCTTAAGTC
CCACCTGTCAGTTTCGCAAGTGTGCGCGTGTGGTCGGAGAGGTTCTTGGA
AATTATCATCCTCATGGCGACACCGCAGTTTATGATGCACTTGTTCGCAT
GGCTCAGTCTTTCTCCATGTCAGTTCCTCTCGTAGACGGTCACGGAAATT
TCGGTTCCACAGATGGAGATCCTCCTGCTGCTATGCGATATACTGATTGT
AAACTGTCTCGTCTCGCCACTTACACATTTCTCTCTGACATTGATTGCAA
CACCGTTTCTTTCAAGCCGAATTTTGATGGTTCTGAGAACGAACCGCTTG
TTCTGCCTGTCAAGCTTCCCAATCTCTTCGTCAACGGAGGTTCTGGTATT
GCTGTCGCCATGGCAACCAATACCCCGCCACACAACCTCATTGAACTTGT
ATCCGCCCTAATTGCGCTCATAAGAGATCCCAACATTGCCCACGAACAGT
TGTTCGAACTGGTACCGGCTCCAGACTTTCTCATAGGTGGGCAGATTCTG
GTACGAAGGGCGCGCAAGAAATGTATCGAACTGGTCGCGGACGTGTAA
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