Ggra5729.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5729.t1
Unique NameGgra5729.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length212
Homology
BLAST of Ggra5729.t1 vs. uniprot
Match: A0A2V3IP59 (Valine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP59_9FLOR)

HSP 1 Score: 226 bits (575), Expect = 4.980e-65
Identity = 134/310 (43.23%), Postives = 168/310 (54.19%), Query Frame = 0
Query:    2 ELATLSVSDFEATIVELPLPERYILSKVHIFVGNFTSGLDPLTFKDAGRQIYEFLWDEFADCH-------------------------------------------------------EQALIVPDWPS---------------------------------------------VTASDVDSEKGMLFLLAKVDPARCKIEVAERGSTSASQNGTDDNAFHLYVTDNLETIIPIPDMIDFDKGRKRLEKQSQKLQKDLEGLQKGLNVPGFANKAPPALFEKTRTTANKIDAQLANLTNRIAEIQKLAAAE 211
            ELAT+++SDF  +I  LPLPERYI+SK+HI V   T GL+ LTF DAGRQIYEFLWDEFAD +                                                       EQALI+ +WPS                                             VTASDV++EKGMLFLL KV+  +  IE+A+      ++  + DNA HLY+ DNLE +IP+ DMIDF+K RKRLEKQS KLQKDL GLQK L+ PGFA+KAPPA+  KTRT+A+++D+QL +LT R+A I+KLA AE
Sbjct:  688 ELATVAISDFGKSIEHLPLPERYIISKLHILVNTVTDGLETLTFGDAGRQIYEFLWDEFADWYVETSKTRFFGTDDEACRDTRATLVYVMDTCLRLLHPFMPYVTEAIWHRFPREGSPEQALIIAEWPSGGSIDQDAIERFERLQSLVRYIRNARAEYQVDHGRKIPLTVRTDAVTASDVEAEKGMLFLLTKVNSEKLTIEIADGAERPTTETESGDNALHLYIADNLEGVIPMRDMIDFEKERKRLEKQSLKLQKDLNGLQKRLSAPGFADKAPPAVVAKTRTSADELDSQLTSLTKRLAAIEKLATAE 997          
BLAST of Ggra5729.t1 vs. uniprot
Match: K0SAX9 (Valine--tRNA ligase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SAX9_THAOC)

HSP 1 Score: 88.2 bits (217), Expect = 1.210e-16
Identity = 52/130 (40.00%), Postives = 81/130 (62.31%), Query Frame = 0
Query:   81 VDSEKGMLFLLAKVDPARCKIEVAERGSTSASQNGTDDNAFHLYVTDNLETIIPIPDMIDFDKGRKRLEKQSQKLQKDLEGLQKGLNVPGFANKAPPALFEKTRTTANKIDAQLANLTNRIAEIQKLAAA 210
            ++SE   L +LAK+DP +  + V E GS  A+ + ++ +A  L V D +E  +P+  M+D +K R+RLE+QS KL K++E L   LN PGFA+KAPPA+ +K R        +LA L ++ +++Q   AA
Sbjct: 1049 IESELKSLVMLAKLDPDQ--VAVVEAGSDEAN-SASEGDAVQLVVQDGVEAYLPLSGMVDAEKERQRLERQSAKLSKEIEKLAGRLNSPGFADKAPPAIVDKARV-------ELAELEDQASKVQASLAA 1168          
BLAST of Ggra5729.t1 vs. uniprot
Match: A0A7S3YVI0 (Valine--tRNA ligase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YVI0_9EUKA)

HSP 1 Score: 77.0 bits (188), Expect = 5.440e-13
Identity = 42/126 (33.33%), Postives = 73/126 (57.94%), Query Frame = 0
Query:   79 SDVDSEKGMLFLLAKVDPARCKIEVAERGSTSASQNGTDDNAFHLYVTDNLETIIPIPDMIDFDKGRKRLEKQSQKLQKDLEGLQKGLNVPGFANKAPPALFEKTRTTANKIDAQLANLTNRIAEI 204
            S ++ EK +L  +A++DP   ++        +A    ++     L + + LE  +P+  M+D +K ++RL KQ++K+QKD++ L K L+  GF +KAPPA  E+TR    +  AQLA +   IA++
Sbjct:  273 SALNQEKDVLAFIARIDPGNYEL------INAADYVASEAKTVKLVIREGLEVELPLSQMVDAEKEKQRLSKQAEKMQKDIDLLDKRLSSKGFVDKAPPAKVEETRGQREEKAAQLAKVMQAIADL 392          
BLAST of Ggra5729.t1 vs. uniprot
Match: A0A7S4DQE2 (Valine--tRNA ligase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DQE2_9EUKA)

HSP 1 Score: 77.0 bits (188), Expect = 8.410e-13
Identity = 42/126 (33.33%), Postives = 73/126 (57.94%), Query Frame = 0
Query:   79 SDVDSEKGMLFLLAKVDPARCKIEVAERGSTSASQNGTDDNAFHLYVTDNLETIIPIPDMIDFDKGRKRLEKQSQKLQKDLEGLQKGLNVPGFANKAPPALFEKTRTTANKIDAQLANLTNRIAEI 204
            S ++ EK +L  +A++DP   ++        +A    ++     L + + LE  +P+  M+D +K ++RL KQ++K+QKD++ L K L+  GF +KAPPA  E+TR    +  AQLA +   IA++
Sbjct:  949 SALNQEKDVLAFIARIDPGNYEL------INAADYVASEAKTVKLVIREGLEVELPLSQMVDAEKEKQRLSKQAEKMQKDIDLLDKRLSSKGFVDKAPPAKVEETRGQREEKAAQLAKVMQAIADL 1068          
BLAST of Ggra5729.t1 vs. uniprot
Match: A0A7S1VHL1 (Valine--tRNA ligase n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VHL1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.440e-12
Identity = 43/118 (36.44%), Postives = 68/118 (57.63%), Query Frame = 0
Query:   80 DVDSEKGMLFLLAKVDPARCKIEVAERGSTSASQNGTDDNAFHLYVTDNLETIIPIPDMIDFDKGRKRLEKQSQKLQKDLEGLQKGLNVPGFANKAPPALFEKTRTTANKIDAQLANL 197
            +++ E   L  LAK+DP   K+ V E GS  A      + A  L + D +E  +P+  +ID  K R RL++QS KL+K++E L   L   GF +KAPPA+ +K R+   +++ QL+ +
Sbjct:  605 EIEKETKSLVSLAKLDPE--KVTVVEAGSDEAKAALEGEEAIQLVIQDGVEAYLPLSGLIDPVKERARLDRQSTKLEKEIEKLGGRLKSSGFVDKAPPAVVDKARSDLAELEDQLSKV 720          
BLAST of Ggra5729.t1 vs. uniprot
Match: A0A7S0HJ41 (Valine--tRNA ligase n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HJ41_9EUKA)

HSP 1 Score: 72.8 bits (177), Expect = 2.130e-12
Identity = 42/124 (33.87%), Postives = 72/124 (58.06%), Query Frame = 0
Query:   81 VDSEKGMLFLLAKVDPARCKIEVAERGSTSASQNGTDDNAFHLYVTDNLETIIPIPDMIDFDKGRKRLEKQSQKLQKDLEGLQKGLNVPGFANKAPPALFEKTRTTANKIDAQLANLTNRIAEI 204
            +++E   +  LA+++    ++ V +    S + +G   N+  L V D LE  +P+ D++D DK R RL KQ++ L+  +E L+K LN PGFA+KAPPA+  K +   ++  A LA +   + E+
Sbjct:   65 LEAELDAIATLARIEAETFEVIVLDVSDGSGA-SGAPPNSVRLVVQDGLEAYLPLADLMDADKERARLGKQAKTLEDGIEKLEKRLNGPGFADKAPPAVVAKAQGELDEQRAALAAVNISLKEL 187          
BLAST of Ggra5729.t1 vs. uniprot
Match: R7QJZ9 (Valine--tRNA ligase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJZ9_CHOCR)

HSP 1 Score: 73.9 bits (180), Expect = 8.960e-12
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 0
Query:    2 ELATLSVSDFEATIVELPLPERYILSKVHIFVGNFTSGLDPLTFKDAGRQIYEFLWDEFADCHEQA 67
            ELA +  S        L LPERYI+SK+H+ V    +GL  L+F DAGRQIY+FLWDEFAD + +A
Sbjct:  496 ELAQIGESKISVAFESLGLPERYIISKLHVLVEKVDTGLHTLSFGDAGRQIYQFLWDEFADWYVEA 561          
BLAST of Ggra5729.t1 vs. uniprot
Match: K8EYD5 (Valine--tRNA ligase n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EYD5_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 2.380e-11
Identity = 51/145 (35.17%), Postives = 73/145 (50.34%), Query Frame = 0
Query:   65 EQALIVPDWPSVTASDVDSEKGMLFLLAKVDPARCKIEVAERGSTSASQNGTDDNAFHLYVTDNLETIIPIPDMIDFDKGRKRLEKQSQKLQKDLEGLQKGLNVPGFANKAPPALFEKTRTTANKIDAQLANLTNRIAEIQKLAA 209
            E   IV    S   SD+ SE  +L  LA++DPA     VA        QN +D    +  V D +E  + +  + D  K  KRL+KQ++KL+KDL GL   LN   F +KA P + EK +  A ++  QLA +  R+  +  L A
Sbjct:  905 ENCTIVVKDSSALLSDLQSEVAVLCSLARLDPA--STTVASSAPADCEQNPSD--YVNAIVADGVEVFLSLAGLADPAKESKRLKKQAEKLEKDLNGLNGRLNSEAFLSKARPDVVEKAQAEAKELREQLAAVQARLKVMTDLLA 1045          
BLAST of Ggra5729.t1 vs. uniprot
Match: A0A7S4VM19 (Valine--tRNA ligase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VM19_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.370e-10
Identity = 41/122 (33.61%), Postives = 69/122 (56.56%), Query Frame = 0
Query:   80 DVDSEKGMLFLLAKVDPARCKIEVAERGSTSASQNGTDDNAFHLYVTDNLETIIPIPDMIDFDKGRKRLEKQSQKLQKDLEGLQKGLNVPGFANKAPPALFEKTRTTANKIDAQLANLTNRI 201
            ++ +E   L  LAK+DP +  + V E GS  A      ++   L V D +E  +P+  +ID  K RKRLEKQS+K++K+++ L   L   GF +KAP A+ +K +    +++ Q A + + +
Sbjct:  182 EISAEVKSLVALAKLDPEQ--VIVVEAGSDEAKAAAAVESV-QLVVQDGVEAYLPLSGLIDPVKERKRLEKQSEKIEKEIQKLAGRLQSKGFVDKAPAAVVDKAKNELAELEDQAAKIKSSL 300          
BLAST of Ggra5729.t1 vs. uniprot
Match: A0A0G4F5E2 (Valine--tRNA ligase n=5 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F5E2_VITBC)

HSP 1 Score: 69.3 bits (168), Expect = 3.680e-10
Identity = 39/108 (36.11%), Postives = 64/108 (59.26%), Query Frame = 0
Query:   87 MLFLLAKVDPARCKIEVAERGSTSASQNGTDDNAFHLYVTDNLETIIPIPDMIDFDKGRKRLEKQSQKLQKDLEGLQKGLNVPGFANKAPPALFEKTRTTANKIDAQL 194
            +L L A++DP   K+ + +  ++S+S +G      HL V + +E  +P+ D++D +K R+RLE+Q  K+ K+L  L   L   GF +KAP A+  K R  A+ + AQL
Sbjct:  932 ILALFARIDPG--KLAITQTATSSSSSSGV----VHLVVGEGVEVDLPMADLVDVEKERQRLERQRDKVDKELAQLTARLGNKGFIDKAPAAVVAKVRAEADDLRAQL 1033          
The following BLAST results are available for this feature:
BLAST of Ggra5729.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IP594.980e-6543.23Valine--tRNA ligase n=1 Tax=Gracilariopsis chorda ... [more]
K0SAX91.210e-1640.00Valine--tRNA ligase n=1 Tax=Thalassiosira oceanica... [more]
A0A7S3YVI05.440e-1333.33Valine--tRNA ligase n=1 Tax=Lotharella globosa Tax... [more]
A0A7S4DQE28.410e-1333.33Valine--tRNA ligase n=1 Tax=Lotharella globosa Tax... [more]
A0A7S1VHL11.440e-1236.44Valine--tRNA ligase n=2 Tax=Grammatophora oceanica... [more]
A0A7S0HJ412.130e-1233.87Valine--tRNA ligase n=1 Tax=Phaeocystis antarctica... [more]
R7QJZ98.960e-1253.03Valine--tRNA ligase n=1 Tax=Chondrus crispus TaxID... [more]
K8EYD52.380e-1135.17Valine--tRNA ligase n=1 Tax=Bathycoccus prasinos T... [more]
A0A7S4VM192.370e-1033.61Valine--tRNA ligase n=1 Tax=Ditylum brightwellii T... [more]
A0A0G4F5E23.680e-1036.11Valine--tRNA ligase n=5 Tax=Vitrella brassicaformi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 187..207
NoneNo IPR availableCOILSCoilCoilcoord: 145..165
NoneNo IPR availableGENE3D1.10.730.10coord: 1..66
e-value: 1.3E-6
score: 29.8
NoneNo IPR availablePANTHERPTHR11946:SF93VALYL-TRNA SYNTHETASE, ISOFORM Ccoord: 113..206
coord: 12..63
IPR019499Valyl-tRNA synthetase, tRNA-binding armPFAMPF10458Val_tRNA-synt_Ccoord: 140..204
e-value: 2.1E-14
score: 53.6
IPR037118Valyl-tRNA synthetase, tRNA-binding arm superfamilyGENE3D1.10.287.380coord: 133..204
e-value: 6.1E-17
score: 63.4
IPR002303Valine-tRNA ligasePANTHERPTHR11946VALYL-TRNA SYNTHETASEScoord: 113..206
coord: 12..63
IPR010978Class I and II aminoacyl-tRNA synthetase, tRNA-binding armSUPERFAMILY46589tRNA-binding armcoord: 140..204
IPR009080Aminoacyl-tRNA synthetase, class Ia, anticodon-bindingSUPERFAMILY47323Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasescoord: 12..154

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000897_piloncontigtig00000897_pilon:146630..147571 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5729.t1Ggra5729.t1Gracilaria gracilis GNS1m malemRNAtig00000897_pilon 146630..147571 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5729.t1 ID=Ggra5729.t1|Name=Ggra5729.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=212bp
MELATLSVSDFEATIVELPLPERYILSKVHIFVGNFTSGLDPLTFKDAGR
QIYEFLWDEFADCHEQALIVPDWPSVTASDVDSEKGMLFLLAKVDPARCK
IEVAERGSTSASQNGTDDNAFHLYVTDNLETIIPIPDMIDFDKGRKRLEK
QSQKLQKDLEGLQKGLNVPGFANKAPPALFEKTRTTANKIDAQLANLTNR
IAEIQKLAAAE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019499Val-tRNA_synth_tRNA-bd
IPR037118Val-tRNA_synth_C_sf
IPR002303Valyl-tRNA_ligase
IPR010978tRNA-bd_arm
IPR009080tRNAsynth_Ia_anticodon-bd