Ggra5729.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5729.t1
Unique NameGgra5729.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length212
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000897_piloncontigtig00000897_pilon:146630..147571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0SAX9
PFAMsAnticodon_1,Val_tRNA-synt_C,tRNA-synt_1
Max annot lvl2836|Bacillariophyta
KEGG rclassRC00055,RC00523
KEGG koko:K01873
KEGG ReactionR03665
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Evalue3.93e-21
EggNOG OGsCOG0525@1|root,KOG0432@2759|Eukaryota,2XBM7@2836|Bacillariophyta
EC6.1.1.9
DescriptionBelongs to the class-I aminoacyl-tRNA synthetase family
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5729Ggra5729Gracilaria gracilis GNS1m malegenetig00000897_pilon 146630..147571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5729.t1Ggra5729.t1Gracilaria gracilis GNS1m malepolypeptidetig00000897_pilon 146630..147571 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5729.t1.start1Ggra5729.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000897_pilon 146630..146632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5729.t1.CDS1Ggra5729.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000897_pilon 146630..146817 +
Ggra5729.t1.CDS2Ggra5729.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000897_pilon 146989..147026 +
Ggra5729.t1.CDS3Ggra5729.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000897_pilon 147162..147571 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5729.t1.exon1Ggra5729.t1.exon1Gracilaria gracilis GNS1m maleexontig00000897_pilon 146630..146817 +
Ggra5729.t1.exon2Ggra5729.t1.exon2Gracilaria gracilis GNS1m maleexontig00000897_pilon 146989..147026 +
Ggra5729.t1.exon3Ggra5729.t1.exon3Gracilaria gracilis GNS1m maleexontig00000897_pilon 147162..147571 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5729.t1.intron1Ggra5729.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000897_pilon 146818..146988 +
Ggra5729.t1.intron2Ggra5729.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000897_pilon 147027..147161 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5729.t1.stop1Ggra5729.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000897_pilon 147569..147571 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5729.t1 ID=Ggra5729.t1|Name=Ggra5729.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=212bp
MELATLSVSDFEATIVELPLPERYILSKVHIFVGNFTSGLDPLTFKDAGR
QIYEFLWDEFADCHEQALIVPDWPSVTASDVDSEKGMLFLLAKVDPARCK
IEVAERGSTSASQNGTDDNAFHLYVTDNLETIIPIPDMIDFDKGRKRLEK
QSQKLQKDLEGLQKGLNVPGFANKAPPALFEKTRTTANKIDAQLANLTNR
IAEIQKLAAAE*
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spliced messenger RNA

>Ggra5729.t1 ID=Ggra5729.t1|Name=Ggra5729.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp|location=Sequence derived from alignment at tig00000897_pilon:146630..147571+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACTCGCAACGTTGTCTGTTTCTGATTTTGAAGCTACAATAGTGGA
ACTGCCTCTGCCTGAACGCTACATATTGTCCAAAGTACATATTTTTGTCG
GTAACTTCACAAGTGGCCTTGACCCGCTAACGTTTAAAGATGCTGGTCGT
CAGATCTACGAGTTTTTGTGGGATGAGTTTGCTGACTGTCACGAGCAGGC
CCTCATTGTCCCCGATTGGCCATCAGTCACAGCATCAGACGTTGACTCGG
AGAAGGGAATGCTGTTTCTGTTAGCAAAAGTTGATCCTGCCCGATGTAAG
ATTGAAGTTGCTGAGAGGGGAAGCACCTCCGCGTCACAGAACGGAACTGA
TGACAACGCCTTCCATCTATACGTCACCGATAACCTAGAAACCATCATAC
CGATTCCAGATATGATTGATTTTGATAAGGGACGAAAGAGACTAGAAAAG
CAGTCGCAGAAACTACAAAAGGACTTGGAAGGTCTCCAAAAGGGGTTGAA
TGTCCCGGGGTTTGCCAACAAAGCTCCTCCCGCACTGTTTGAAAAGACCA
GAACAACTGCTAACAAAATAGACGCTCAGCTAGCAAATCTTACAAACAGG
ATAGCAGAAATCCAAAAGTTGGCTGCTGCTGAGTAA
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protein sequence of Ggra5729.t1

>Ggra5729.t1 ID=Ggra5729.t1|Name=Ggra5729.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=212bp
MELATLSVSDFEATIVELPLPERYILSKVHIFVGNFTSGLDPLTFKDAGR
QIYEFLWDEFADCHEQALIVPDWPSVTASDVDSEKGMLFLLAKVDPARCK
IEVAERGSTSASQNGTDDNAFHLYVTDNLETIIPIPDMIDFDKGRKRLEK
QSQKLQKDLEGLQKGLNVPGFANKAPPALFEKTRTTANKIDAQLANLTNR
IAEIQKLAAAE*
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mRNA from alignment at tig00000897_pilon:146630..147571+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5729.t1 ID=Ggra5729.t1|Name=Ggra5729.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000897_pilon:146630..147571+ (Gracilaria gracilis GNS1m male)
ATGGAACTCGCAACGTTGTCTGTTTCTGATTTTGAAGCTACAATAGTGGA
ACTGCCTCTGCCTGAACGCTACATATTGTCCAAAGTACATATTTTTGTCG
GTAACTTCACAAGTGGCCTTGACCCGCTAACGTTTAAAGATGCTGGTCGT
CAGATCTACGAGTTTTTGTGGGATGAGTTTGCTGACTGGTATGTATAAAC
GTCAAAGACGAGATTCTTTGCCATTGCCAACGACGCCGAGACAGCAGGGC
GAACTCTAGCCACACTTGTCTACGTCATGGATACTTGCTTGCGTCTTATG
CACCCGTTTATGCCTTTTGTTACTGAAGCAATTTGGCATCGCTTTCCACG
AGAAGGCAGTCACGAGCAGGCCCTCATTGTCCCCGATTGGCCATCAGGTG
GCGCTGTTGATCATGAGGCTCTCCGAAGATTTGAGAGAGTGCAATCACTA
GTTCGCTGCACAAGAAATGCCACAGCAGAGCATTAAGTCGATCACGGACG
TAGAATACCACTCACTATACGAACGGATACAGTCACAGCATCAGACGTTG
ACTCGGAGAAGGGAATGCTGTTTCTGTTAGCAAAAGTTGATCCTGCCCGA
TGTAAGATTGAAGTTGCTGAGAGGGGAAGCACCTCCGCGTCACAGAACGG
AACTGATGACAACGCCTTCCATCTATACGTCACCGATAACCTAGAAACCA
TCATACCGATTCCAGATATGATTGATTTTGATAAGGGACGAAAGAGACTA
GAAAAGCAGTCGCAGAAACTACAAAAGGACTTGGAAGGTCTCCAAAAGGG
GTTGAATGTCCCGGGGTTTGCCAACAAAGCTCCTCCCGCACTGTTTGAAA
AGACCAGAACAACTGCTAACAAAATAGACGCTCAGCTAGCAAATCTTACA
AACAGGATAGCAGAAATCCAAAAGTTGGCTGCTGCTGAGTAA
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Coding sequence (CDS) from alignment at tig00000897_pilon:146630..147571+

>Ggra5729.t1 ID=Ggra5729.t1|Name=Ggra5729.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=636bp|location=Sequence derived from alignment at tig00000897_pilon:146630..147571+ (Gracilaria gracilis GNS1m male)
ATGGAACTCGCAACGTTGTCTGTTTCTGATTTTGAAGCTACAATAGTGGA
ACTGCCTCTGCCTGAACGCTACATATTGTCCAAAGTACATATTTTTGTCG
GTAACTTCACAAGTGGCCTTGACCCGCTAACGTTTAAAGATGCTGGTCGT
CAGATCTACGAGTTTTTGTGGGATGAGTTTGCTGACTGTCACGAGCAGGC
CCTCATTGTCCCCGATTGGCCATCAGTCACAGCATCAGACGTTGACTCGG
AGAAGGGAATGCTGTTTCTGTTAGCAAAAGTTGATCCTGCCCGATGTAAG
ATTGAAGTTGCTGAGAGGGGAAGCACCTCCGCGTCACAGAACGGAACTGA
TGACAACGCCTTCCATCTATACGTCACCGATAACCTAGAAACCATCATAC
CGATTCCAGATATGATTGATTTTGATAAGGGACGAAAGAGACTAGAAAAG
CAGTCGCAGAAACTACAAAAGGACTTGGAAGGTCTCCAAAAGGGGTTGAA
TGTCCCGGGGTTTGCCAACAAAGCTCCTCCCGCACTGTTTGAAAAGACCA
GAACAACTGCTAACAAAATAGACGCTCAGCTAGCAAATCTTACAAACAGG
ATAGCAGAAATCCAAAAGTTGGCTGCTGCTGAGTAA
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