Ggra5681.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5681.t2
Unique NameGgra5681.t2
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length121
Homology
BLAST of Ggra5681.t2 vs. uniprot
Match: A0A2V3IX62 (Transcription elongation factor SPT4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX62_9FLOR)

HSP 1 Score: 208 bits (530), Expect = 1.010e-67
Identity = 102/123 (82.93%), Postives = 111/123 (90.24%), Query Frame = 0
Query:    1 MAQASGAHVVPTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCPFMSLNGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRV-----GAYAIHIDARMPDDIVEQLEENRIRMHSVLATTDKP 118
            M+   G+HVVPTEV QS+LKACMSCSLIKTTQQFYTDGCDNC FMSL GDKERISACTTSQFVGTYVVMNPTKSWVAKWQRV     GAYA+HIDAR+PDDIVEQLEEN IR++SV+ATT+KP
Sbjct:    1 MSNNDGSHVVPTEVAQSKLKACMSCSLIKTTQQFYTDGCDNCDFMSLAGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRVASFVPGAYAVHIDARLPDDIVEQLEENGIRVYSVVATTEKP 123          
BLAST of Ggra5681.t2 vs. uniprot
Match: A0A7S1TIX5 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TIX5_9RHOD)

HSP 1 Score: 120 bits (302), Expect = 4.520e-33
Identity = 53/110 (48.18%), Postives = 76/110 (69.09%), Query Frame = 0
Query:   11 PTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCPFMSLNGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRV-----GAYAIHIDARMPDDIVEQLEENRIRMHSVLATT 115
            PTE + ++L+ACM+CSL+K+  QF   GC+NCPF+ L  D+ERI  CTT  F G + VM P +SWVAKWQR+     G YA+ ++  +P+DI+E++ EN  + H V AT+
Sbjct:    9 PTETSLNKLRACMNCSLVKSAHQFSIRGCENCPFLGLENDRERIQLCTTPNFSGLFSVMRPLESWVAKWQRIVKLRSGCYALSVEGELPEDIIEEMLENGGKAHRVRATS 118          
BLAST of Ggra5681.t2 vs. uniprot
Match: A0A7S0BQA9 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BQA9_9RHOD)

HSP 1 Score: 120 bits (300), Expect = 1.690e-32
Identity = 57/113 (50.44%), Postives = 78/113 (69.03%), Query Frame = 0
Query:    9 VVPTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCPFMSLNGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRV-----GAYAIHIDARMPDDIVEQLEENRIRMHSVLATTD 116
            +VPT+ + S+L+ C+SCSL+KT  QF T+GC+NCPF+++ GDKERI  CT++  +G Y  MNP  SWVA+WQR      G YAI IDA +P+ I E+L E  IR+    AT +
Sbjct:   24 MVPTDWS-SKLRGCLSCSLVKTVNQFATNGCENCPFLNMQGDKERIMDCTSNSILGIYTTMNPRTSWVARWQRTVKLRPGCYAIAIDATLPEGIEEELSEQGIRVKRTRATAE 135          
BLAST of Ggra5681.t2 vs. uniprot
Match: A0A1X6P9H5 (Spt4 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P9H5_PORUM)

HSP 1 Score: 119 bits (298), Expect = 4.400e-32
Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = 0
Query:    8 HVVPTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCPFMSLNGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRVG------AYAIHIDARMPDDIVEQLEENRIRMHSVLAT 114
             V+PTE   S+L+AC+SCSLIKT +QF  DGCDNC F+ +   ++R+  CT+  FVG   V NP  SWV +WQR+G       YAI +DA++P+DI E LE+N  R+    AT
Sbjct:   32 RVIPTEFLPSKLRACLSCSLIKTAEQFLLDGCDNCDFLDMANSRDRVGQCTSGAFVGVAGVANPADSWVGRWQRLGRNAVAGCYAIGVDAKLPEDIRESLEDNGYRVARTRAT 144          
BLAST of Ggra5681.t2 vs. uniprot
Match: A0A7S0ZLH4 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZLH4_9RHOD)

HSP 1 Score: 115 bits (288), Expect = 6.610e-31
Identity = 54/111 (48.65%), Postives = 74/111 (66.67%), Query Frame = 0
Query:    9 VVPTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCPFMSLNGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRV-----GAYAIHIDARMPDDIVEQLEENRIRMHSVLAT 114
            +VP E   ++L+AC+SCSL+KT +QFY  GCDNCP + L  D E I+ CT++ F GTYV++ P  SWV+KWQR      G YAI ID ++P    E+L EN  R++ + AT
Sbjct:    8 IVPQEFGMNKLRACLSCSLVKTQKQFYDQGCDNCPGLMLQRDSEAIAVCTSNAFSGTYVLLRPKDSWVSKWQRTRRFRPGCYAIQIDIQLPQSEEERLVENGQRVNRIRAT 118          
BLAST of Ggra5681.t2 vs. uniprot
Match: M1V579 (Spt4 domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V579_CYAM1)

HSP 1 Score: 103 bits (256), Expect = 4.220e-26
Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = 0
Query:    9 VVPTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCP--FMSLNGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRV-----GAYAIHIDARMPDDIVEQLEENRIRMHS 110
            VVP+EV  S+L+AC+SC L+K+  QF   GC+NCP  F +  GD+ER+   TT++F G   +  P  SWVAKWQR+     G YAI I A +PDD++E+LE  R  + S
Sbjct:   10 VVPSEVQSSKLRACLSCGLVKSVAQFLAYGCENCPGLFEAGTGDRERVLTFTTAEFSGLVALYRPKVSWVAKWQRLSRKVPGCYAIGILAELPDDVLEELEALRFDVES 118          
BLAST of Ggra5681.t2 vs. uniprot
Match: A0A7J7IN23 (Transcription elongation factor SPT4 n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IN23_9RHOD)

HSP 1 Score: 98.6 bits (244), Expect = 2.780e-24
Identity = 45/101 (44.55%), Postives = 69/101 (68.32%), Query Frame = 0
Query:    9 VVPTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCPFM--SLNGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRV-----GAYAIHIDARMPDDIVEQLE 102
            VVP+E+  S+L+AC+SC L+K+  QF   GC+NCP +  +  GD+ER+   TT++F G   +  P +SWVA+WQR+     G YA+ I A +PDD++E+L+
Sbjct:   10 VVPSEIQSSKLRACLSCGLVKSVAQFLAYGCENCPGLIEAGTGDRERVLTFTTTEFSGITALYKPKRSWVARWQRLSQLVPGCYAVGIHANVPDDVLEELD 110          
BLAST of Ggra5681.t2 vs. uniprot
Match: A0A2P6VHW0 (Transcription elongation factor SPT4 homolog n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VHW0_9CHLO)

HSP 1 Score: 97.4 bits (241), Expect = 8.840e-24
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = 0
Query:   11 PTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCPFMSLNGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRV-----GAYAIHIDARMPDDIVEQLEENRIR 107
            PT++ +S L+ C+ C L+KT +QFY  GC+NCPF+ + GD+ER+  CTTS+F G   V++PT SW AKW  +     G YA+ + A +P  I + L+   I+
Sbjct:   16 PTDLGKS-LRCCVPCRLVKTFEQFYEQGCENCPFLEMEGDRERVFDCTTSEFKGMVSVVDPTSSWCAKWLHLRKAVPGCYALSVSAELPQHIEDILDNRGIK 116          
BLAST of Ggra5681.t2 vs. uniprot
Match: A0A6B2LT88 (Spt4 domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LT88_9EUKA)

HSP 1 Score: 96.7 bits (239), Expect = 1.140e-23
Identity = 41/95 (43.16%), Postives = 63/95 (66.32%), Query Frame = 0
Query:   18 RLKACMSCSLIKTTQQFYTDGCDNCPFMSLNGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRV------GAYAIHIDARMPDDIVEQLEENRI 106
            RL+ACM C L+K T+QF   GC+NC F+ ++GD +R+ +CTT+ F G   +M P +SWVA+WQR+      G YA+ +  R+  D++  L EN++
Sbjct:    3 RLRACMGCGLVKETRQFQKFGCNNCTFLKIHGDGDRLESCTTTNFSGLISMMKPERSWVARWQRMRPNLVPGCYAVTVQGRLGPDMINILHENQV 97          
BLAST of Ggra5681.t2 vs. uniprot
Match: A0A2G8LK21 (Transcription elongation factor SPT4 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LK21_STIJA)

HSP 1 Score: 96.7 bits (239), Expect = 1.460e-23
Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = 0
Query:    9 VVPTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCP-FMSLNGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRV-----GAYAIHIDARMPDDIVEQLEENRIRMHS 110
            +VPTE+  +R  AC+ CSLIKTT QF  DGCDNC  ++ + G+++ +  CT+S F G   +M P  SWVAKWQR      G YAI +   +P  IV++L+   I+  S
Sbjct:    3 IVPTELRHTR--ACLLCSLIKTTDQFEADGCDNCEEYLQMKGNRDMVMDCTSSSFDGMIALMTPEDSWVAKWQRTSRCTKGCYAISVTGHLPKGIVQELKSRGIQYRS 108          
The following BLAST results are available for this feature:
BLAST of Ggra5681.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IX621.010e-6782.93Transcription elongation factor SPT4 n=1 Tax=Graci... [more]
A0A7S1TIX54.520e-3348.18Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0BQA91.690e-3250.44Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A1X6P9H54.400e-3248.67Spt4 domain-containing protein n=1 Tax=Porphyra um... [more]
A0A7S0ZLH46.610e-3148.65Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
M1V5794.220e-2647.71Spt4 domain-containing protein n=1 Tax=Cyanidiosch... [more]
A0A7J7IN232.780e-2444.55Transcription elongation factor SPT4 n=1 Tax=Cyani... [more]
A0A2P6VHW08.840e-2443.14Transcription elongation factor SPT4 homolog n=1 T... [more]
A0A6B2LT881.140e-2343.16Spt4 domain-containing protein n=1 Tax=Arcella int... [more]
A0A2G8LK211.460e-2344.44Transcription elongation factor SPT4 n=1 Tax=Stich... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022800Spt4/RpoE2 zinc fingerSMARTSM01389Spt4_2coord: 19..90
e-value: 7.1E-27
score: 105.3
IPR022800Spt4/RpoE2 zinc fingerPFAMPF06093Spt4coord: 19..86
e-value: 5.7E-25
score: 87.2
IPR022800Spt4/RpoE2 zinc fingerCDDcd07973Spt4coord: 18..107
e-value: 5.99512E-36
score: 116.569
IPR038510Spt4 superfamilyGENE3D3.30.40.210coord: 3..105
e-value: 2.0E-32
score: 113.2
IPR009287Transcription initiation Spt4PIRSFPIRSF025023Spt4coord: 7..116
e-value: 3.0E-33
score: 112.1
IPR009287Transcription initiation Spt4PANTHERPTHR12882SUPPRESSOR OF TY 4coord: 10..110
NoneNo IPR availablePANTHERPTHR12882:SF1TRANSCRIPTION ELONGATION FACTOR SPT4coord: 10..110
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4SUPERFAMILY63393RNA polymerase subunitscoord: 14..89

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1344828..1345355 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5681.t2Ggra5681.t2Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 1344828..1345355 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5681.t2 ID=Ggra5681.t2|Name=Ggra5681.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=121bp
MAQASGAHVVPTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCPFMSLNGD
KERISACTTSQFVGTYVVMNPTKSWVAKWQRVGAYAIHIDARMPDDIVEQ
LEENRIRMHSVLATTDKPDS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022800Spt4/RpoE2_Znf
IPR038510Spt4_sf
IPR009287Spt4
IPR029040RPABC4/Spt4