Ggra5681.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5681.t2
Unique NameGgra5681.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length121
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1344828..1345355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ060CT
Preferred nameSUPT4H1
PFAMsSpt4
Max annot lvl2759|Eukaryota
KEGG koko:K15171
GOsGO:0000122,GO:0000182,GO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0000790,GO:0000988,GO:0000990,GO:0000991,GO:0000993,GO:0001098,GO:0001099,GO:0001181,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0003727,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005703,GO:0005705,GO:0006139,GO:0006282,GO:0006325,GO:0006338,GO:0006342,GO:0006351,GO:0006354,GO:0006355,GO:0006356,GO:0006357,GO:0006366,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0006996,GO:0007059,GO:0008023,GO:0008150,GO:0008152,GO:0008270,GO:0008298,GO:0008380,GO:0009058,GO:0009059,GO:0009452,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016479,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032044,GO:0032774,GO:0032784,GO:0032785,GO:0032786,GO:0032968,GO:0032991,GO:0033036,GO:0034243,GO:0034244,GO:0034641,GO:0034645,GO:0034654,GO:0036260,GO:0040029,GO:0043167,GO:0043169,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045943,GO:0045944,GO:0046483,GO:0046872,GO:0046914,GO:0046982,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0051052,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051641,GO:0060255,GO:0065007,GO:0070013,GO:0070063,GO:0070727,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090069,GO:0090262,GO:0090304,GO:0097159,GO:0097659,GO:0098687,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2000232,GO:2000819,GO:2001020,GO:2001141,GO:2001207,GO:2001208,GO:2001209
Evalue1.04e-26
EggNOG OGsCOG5204@1|root,KOG3490@2759|Eukaryota
Descriptionpositive regulation of DNA-templated transcription, elongation
COG categoryK
BRITEko00000,ko03019,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5681Ggra5681Gracilaria gracilis GNS1m malegenetig00000842_pilon 1344828..1345355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5681.t2Ggra5681.t2Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1344828..1345355 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5681.t2.start1Ggra5681.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1344828..1344830 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5681.t2.CDS1Ggra5681.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1344828..1345018 +
Ggra5681.t2.CDS2Ggra5681.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1345083..1345138 +
Ggra5681.t2.CDS3Ggra5681.t2.CDS3Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1345240..1345355 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5681.t2.exon1Ggra5681.t2.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1344828..1345018 +
Ggra5681.t2.exon2Ggra5681.t2.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 1345083..1345138 +
Ggra5681.t2.exon3Ggra5681.t2.exon3Gracilaria gracilis GNS1m maleexontig00000842_pilon 1345240..1345355 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5681.t2.intron1Ggra5681.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 1345019..1345082 +
Ggra5681.t2.intron2Ggra5681.t2.intron2Gracilaria gracilis GNS1m maleintrontig00000842_pilon 1345139..1345239 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5681.t2.stop1Ggra5681.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1345353..1345355 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5681.t2 ID=Ggra5681.t2|Name=Ggra5681.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=121bp
MAQASGAHVVPTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCPFMSLNGD
KERISACTTSQFVGTYVVMNPTKSWVAKWQRVGAYAIHIDARMPDDIVEQ
LEENRIRMHSVLATTDKPDS*
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spliced messenger RNA

>Ggra5681.t2 ID=Ggra5681.t2|Name=Ggra5681.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=363bp|location=Sequence derived from alignment at tig00000842_pilon:1344828..1345355+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCAGGCATCCGGCGCGCACGTTGTGCCAACCGAAGTCACTCAAAG
CAGGCTTAAAGCATGCATGTCATGCTCATTAATCAAGACCACACAGCAGT
TCTACACGGACGGATGTGACAATTGCCCCTTCATGAGTCTTAATGGTGAC
AAAGAACGTATCAGCGCATGTACAACATCTCAGTTTGTTGGCACTTACGT
CGTCATGAATCCGACAAAATCATGGGTCGCAAAATGGCAACGAGTTGGTG
CTTACGCTATTCATATTGATGCCCGTATGCCAGATGATATTGTGGAACAA
CTTGAAGAGAATAGAATCCGAATGCACTCGGTTCTGGCTACAACCGACAA
ACCAGACAGCTAG
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protein sequence of Ggra5681.t2

>Ggra5681.t2 ID=Ggra5681.t2|Name=Ggra5681.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=121bp
MAQASGAHVVPTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCPFMSLNGD
KERISACTTSQFVGTYVVMNPTKSWVAKWQRVGAYAIHIDARMPDDIVEQ
LEENRIRMHSVLATTDKPDS*
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mRNA from alignment at tig00000842_pilon:1344828..1345355+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5681.t2 ID=Ggra5681.t2|Name=Ggra5681.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00000842_pilon:1344828..1345355+ (Gracilaria gracilis GNS1m male)
ATGGCCCAGGCATCCGGCGCGCACGTTGTGCCAACCGAAGTCACTCAAAG
CAGGCTTAAAGCATGCATGTCATGCTCATTAATCAAGACCACACAGCAGT
TCTACACGGACGGATGTGACAATTGCCCCTTCATGAGTCTTAATGGTGAC
AAAGAACGTATCAGCGCATGTACAACATCTCAGTTTGTTGGGTAAGTTCA
ATAAGTTCACAATGTGCATGTCGATCAACTCCCTTCTAACCTTTATTTCA
ATTAGCACTTACGTCGTCATGAATCCGACAAAATCATGGGTCGCAAAATG
GCAACGAGTTGGTATGTTCTCGTTTCTTGTCCTTTCGTGCGAAGCTGTTT
CTTTGCTGTTTATGGTATACGAGCATGTACTGACATTTGCGCTTTAGCTT
CTTTTGTACCAGGTGCTTACGCTATTCATATTGATGCCCGTATGCCAGAT
GATATTGTGGAACAACTTGAAGAGAATAGAATCCGAATGCACTCGGTTCT
GGCTACAACCGACAAACCAGACAGCTAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:1344828..1345355+

>Ggra5681.t2 ID=Ggra5681.t2|Name=Ggra5681.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=363bp|location=Sequence derived from alignment at tig00000842_pilon:1344828..1345355+ (Gracilaria gracilis GNS1m male)
ATGGCCCAGGCATCCGGCGCGCACGTTGTGCCAACCGAAGTCACTCAAAG
CAGGCTTAAAGCATGCATGTCATGCTCATTAATCAAGACCACACAGCAGT
TCTACACGGACGGATGTGACAATTGCCCCTTCATGAGTCTTAATGGTGAC
AAAGAACGTATCAGCGCATGTACAACATCTCAGTTTGTTGGCACTTACGT
CGTCATGAATCCGACAAAATCATGGGTCGCAAAATGGCAACGAGTTGGTG
CTTACGCTATTCATATTGATGCCCGTATGCCAGATGATATTGTGGAACAA
CTTGAAGAGAATAGAATCCGAATGCACTCGGTTCTGGCTACAACCGACAA
ACCAGACAGCTAG
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