Ggra5659.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5659.t1
Unique NameGgra5659.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length282
Homology
BLAST of Ggra5659.t1 vs. uniprot
Match: A0A2V3IU96 (Putative 16S rRNA-processing protein RimM n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IU96_9FLOR)

HSP 1 Score: 429 bits (1103), Expect = 4.020e-149
Identity = 211/274 (77.01%), Postives = 239/274 (87.23%), Query Frame = 0
Query:    8 TDPRLDQWAPENLGFLHVATITGAHGVKGELKARTEGDFNRVRLSAKKNAQQRYILLPGRRYPRPVNLTAGRQASQKNAWIVKLDGFGNRESITKLRGARLYVRESDRPALERGEFMVADLVGCRVSLPLNLNDGDPWYTSEANGQPNEIRAGDPIGVVDSVITRQDLCEASGSGSSGASLASDLLEIAMFDVPDQHVHSGLYNEPPPVEARRVLVPFVNQIVPVVDISNAVIVLSPPEGLLDIAIVNRKRKERPARGLLMPAGQNTVINANDV 281
            TDPR DQWAPENLGFLHVATITGAHGVKGELKARTEGDF  VRLS KKNAQQRY+LLPGRRYPRP+NL AGRQASQ  AWIVKLDG+ +RES+ KLRGARLYVRESDRP+LE GEFMVADLVG RVSL  +++D DPWYT+E       + A +PIGVVDSVITR DLC ASG G++GA++ASDL+EIA+FDV DQ V  G+++EPPP EA+RVLVPFVNQIVPVVD+ NAVIVL PP+GLLDIA+VNRKRK++P RGLLMPA QNTVINAN+V
Sbjct:   56 TDPREDQWAPENLGFLHVATITGAHGVKGELKARTEGDFTPVRLSTKKNAQQRYLLLPGRRYPRPINLVAGRQASQNKAWIVKLDGYSSRESVDKLRGARLYVRESDRPSLESGEFMVADLVGSRVSLFASVDDDDPWYTAEGRETSKAVCAANPIGVVDSVITRDDLCLASGGGAAGAAVASDLIEIALFDVSDQQVEDGIHSEPPPEEAQRVLVPFVNQIVPVVDVRNAVIVLDPPDGLLDIAVVNRKRKQKPPRGLLMPAAQNTVINANEV 329          
BLAST of Ggra5659.t1 vs. uniprot
Match: A0A5J4Z6X1 (Putative 16S rRNA-processing protein RimM n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z6X1_PORPP)

HSP 1 Score: 185 bits (469), Expect = 1.050e-51
Identity = 106/263 (40.30%), Postives = 150/263 (57.03%), Query Frame = 0
Query:    7 GTDPRLDQWAPENLGFLHVATITGAHGVKGELKARTEGDFNRVRLSAKKNAQQRYILLPGRRYPRPVNLTAGRQASQKNAWIVKLDGFGNRESITK-LRGARLYVRESDRP-ALERGEFMVADLVGCRVSLPLNLNDGDPWYTSEANGQPNEIRAGDPIGVVDSVITRQDLCEASGSGSSGASLASDLLEIAMFDVPDQHVHSGLYNEPPPVEARRVLVPFVNQIVPVVDISNAVIVLSPPEGLLDIAIVNRKRKERPARGLL 267
            G D   ++W P+ LGF  + TI GAHGV+GEL+ R+  DF++ RL+   +   RY+LLPGR++PRPV L AGRQASQ   WI+K+ G  NRE I + LRGA+L+V+ +DRP +L + EF+  +L G  V +      GD                   +G V  VITR ++  ++G+GS+ A   +DLL + +FD              P  EA +V +PFV QIVP VD  N  + + PPEGL D+A+V R  +    R L+
Sbjct:  115 GVDDTEEEWTPDKLGFSEICTIIGAHGVRGELRVRSSSDFSKERLTVSSSHSTRYMLLPGRKFPRPVTLVAGRQASQAECWIIKIQGITNREYINQMLRGAKLFVKSTDRPKSLRKNEFLARELEGMDVRMFDTQKFGDGV-----------------VGRVSEVITRYEI--STGAGSAAAEFGNDLLMVELFD------------RGPNREATQVWIPFVEQIVPFVDALNREVHIDPPEGLFDVAVVKRSARRIRPRALI 346          
BLAST of Ggra5659.t1 vs. uniprot
Match: A0A1X6NZ83 (RimM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NZ83_PORUM)

HSP 1 Score: 145 bits (367), Expect = 4.990e-38
Identity = 116/321 (36.14%), Postives = 148/321 (46.11%), Query Frame = 0
Query:   15 WAPENLGFLHVATITGAHGVKGELKARTEGDFNRVRLSAKK-----------------------------NAQQRYILLPGRRYPRPVNLTAGRQASQKNAWIVKLDGFGNRESITKLRGARLYVRESDRPALERGEFMVADLVGCRVSL-----------------PLN---------LNDGDPWYTSEANGQPNEIRAGD--PIGVVDSVITRQDLCEASGSGSSGASLASDLLEIAMFDVPDQHVHSGLYNEPPPV------EARRVLVPFVNQIVPVVDISNAVIVLSPPEGLLDIAIVNRKRKERPARGLLMPAGQ 272
            ++PE L F  V  ITGAHGV+GELK R   D+ R RL+                                   QR++LLPGRRYPRPV +T  R+A+Q   WIV LD    RE +  L G RLYVR S+RP +  GEF+V DLVG  V L                 PL+           DG               RA     +G V +V+TR  L  A  +  S + L  D+LE+A+ D        G     P V      +A RVLVPFV  IVPVVD+   VI + PP GL ++A+V R+   +  RGLL  A +
Sbjct:   14 YSPEALSFSEVGAITGAHGVRGELKLRAATDWARQRLAPDTPLPPRQGRRRPGASSXXXXXXXXXXXXXXXPPQRFLLLPGRRYPRPVGVTGARKATQAGTWIVSLDCCTCREEVAPLVGGRLYVRASERPRMGAGEFLVRDLVGMDVLLRPXXXXXXXXXXXAVGAPLSGAPAVAGSHAGDGXXXXXXXTAAAEVPPRASPLPVVGRVVAVMTRDQLA-AGATEESTSVLGGDVLEVALGDWAAAEAPGG-----PGVAAWDWADAVRVLVPFVRPIVPVVDVERRVIEVDPPAGLFEVAVVPRRGGVK-IRGLLTAAAE 327          
BLAST of Ggra5659.t1 vs. uniprot
Match: I2CPH4 (16s rrna-processing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPH4_NANGC)

HSP 1 Score: 125 bits (314), Expect = 3.190e-30
Identity = 85/248 (34.27%), Postives = 128/248 (51.61%), Query Frame = 0
Query:   12 LDQWAPENLGFLHVATITGAHGVKGELKARTEGDFNRVRLSAKKNAQQRYILLPGRRYPRPVNLTAGRQASQKNAWIVKLDGFGNRESITKLRGARLYVRESDRPALERGEFMVADLVGCRVSLPLNLNDGDPWYTSEANGQPNEIRAGD-PIGVVDSVITRQDLCEASGSGSSGASLASDLLEIAMFDVPDQHVHSGLYNEPPPVEARRVLVPFVNQIVPVVDISNAVIVLSPPEGLLDIAIVNRKR 258
            +D + P   GF+    + GAHGV G L+ +   D   V  SA  +   R+I  P RRYPRP+ +   R A+ ++ ++VK++G   RE+   LR  ++YV+E +RP+LE  EF V D+V   V +                     + A D  IG V  VIT ++  +          LA+DLLE+ + +  D+     L  EPPP+   +VLVPFV QIVP+VD+    + + PP GLLD+A    ++
Sbjct:  106 IDPYEPNTFGFIEAGLVQGAHGVDGCLRVKGTSD---VAGSALTSPGLRHIKGPKRRYPRPITVLEAR-ATVEDTYLVKVEGIEGREAAAALRDFKIYVKEEERPSLEEDEFYVKDMVDMDVVM---------------------VGAEDVSIGRVVDVITAENARQG---------LANDLLEVELINQDDESGRPQLRTEPPPI--YQVLVPFVKQIVPIVDLPGRTLHIDPPPGLLDLAYAKAEK 317          
BLAST of Ggra5659.t1 vs. uniprot
Match: A0A7J7IFE5 (RimM domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IFE5_9RHOD)

HSP 1 Score: 114 bits (286), Expect = 7.690e-27
Identity = 92/272 (33.82%), Postives = 130/272 (47.79%), Query Frame = 0
Query:   10 PRLDQWAPENLGFLHVATITGAHGVKGELKARTEGDFNRVRLSAKKNAQQRYILLPGRRYPRPVNLTAGRQASQKNAWIVKLDGFGNRESITKLRGARLYVRESD-RP-ALERGEFMVADLVGCRVSLPLNLN----DGDPWYTSEANGQPNEIRAGDPIGVVDSVITRQDLCEASGSGSSGASLASDLLEIAMF------DVPDQHVHSGLYNEPPPVEARRVLVPFVNQIVPVVDISNAVIVLSPPEGLLDIAIVNRKRKERPARGLLMP 269
            P L  + P   GF+ + TITG HGV+GE K R   DF R RL ++    QRY+ L  R YPRPV +  GR ASQ N WI+++ G  +R++  +LRGA LY+ E++ RP +L   E+ + + +G  V L   L       D  +T +A         G  IG V  V+ R+DL             A D LE+ +F      DVP        +N      +  +L P ++           + VL PP GLL +A V ++ K    RG L P
Sbjct:   21 PELADYDPSRFGFIEIGTITGPHGVRGECKVRLSTDFVRERLPSQ--PVQRYLKLSYRVYPRPVQVQDGRPASQPNQWIIRIHGVDDRDAAKRLRGASLYIHETEERPRSLTENEYTIREWLGRAVILRERLEMLRAQKDFRWTRQA-------LLGHCIGKVIGVVLREDL-----------GGAHDSLELLLFEGYRCLDVPFVDAFITEWN------SAEMLAPTLSD----PGTLPTLAVLDPPPGLLALAQVRKRTKPPRIRGYLPP 262          
BLAST of Ggra5659.t1 vs. uniprot
Match: ribosome maturation factor RimM n=1 Tax=Microcoleus sp. FACHB-831 TaxID=2692827 RepID=UPI001682E379 (ribosome maturation factor RimM n=1 Tax=Microcoleus sp. FACHB-831 TaxID=2692827 RepID=UPI001682E379)

HSP 1 Score: 112 bits (280), Expect = 1.660e-26
Identity = 83/233 (35.62%), Postives = 115/233 (49.36%), Query Frame = 0
Query:   22 FLHVATITGAHGVKGELKARTEGDFNRVRLSAKKNAQQRYILLPGRRYPRPVNLTAGRQASQKNAWIVKLDGFGNRESITKLRGARLYVRESDRPALERGEFMVADLVGCRVSLPLNLNDGDPWYTSEANGQPNEIRAGDPIGVVDSVITR-QDLCEASGSGSSGASLASDLLEIAMFDVPDQHVHSGLYNEPPPV--EARRVLVPFVNQIVPVVDISNAVIVLSPPEGLLDI 251
             L +  I  A G+KGEL+  ++ DF        +N  QR++L PG   P+PV L +GR    KN +IVKL G  +R     L GA+L V ESDRPALE GE+ V DL+G +V            +  E+         G+ +GVV  V +   DL E      S A +A +       + P+    +G     P    +   VL+PFV  I P+VDI N  I ++PP GLL+I
Sbjct:    6 LLEIGKIVSAQGLKGELRVYSQSDFP----ERFENPGQRWLLRPGETEPQPVELVSGRYVDGKNLYIVKLAGVEDRTQAEALVGAKLMVPESDRPALEEGEYHVLDLIGLQV------------FNQES---------GENVGVVVDVFSAGHDLLEVK-LHQSPAPVAIES------ENPEAKAKTGKKRNKPKAAKQPETVLIPFVTAIAPIVDIENGRIEITPPPGLLEI 206          
BLAST of Ggra5659.t1 vs. uniprot
Match: A0A7S0G5Z6 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G5Z6_9RHOD)

HSP 1 Score: 112 bits (280), Expect = 8.410e-26
Identity = 76/221 (34.39%), Postives = 114/221 (51.58%), Query Frame = 0
Query:   60 RYILLPGRRYPRPVNLTAGRQASQKNAWIVKLDGFGNRESITKLRGARLYVRESDRPALERGEFMVADLVGCRVSLPLNLNDGDPWYTSEANGQPNEIRAGDPIGVVDSVITRQDLCEASGSGSSGASLASDLLEIAMFDVPDQHVHSGLYNEPPPVEARRVLVPFVNQIVPVVDISNAVIVLSPPEGLLDIAIVNRKRKERPARGLLMPAGQNTVINAND 280
            RY+  P R YPRP+ +  G++A+QK  WIV L+G  + E +  L+GAR+ V+  D+P ++RGE+ V DLVG +V L                        G  +G V+ V T ++L +   + S    +  D+LEI + D  +                  VLVPFV Q+VPVVDI    I++ PPEGLLD+A VN   + R A  L + A + T++ + +
Sbjct:   97 RYLKSPNRLYPRPIKILRGQKAAQKETWIVWLEGLTSPEEVKTLKGARICVKLGDKPKVKRGEYYVRDLVGLKVRL---------------------YGKGALLGAVNDVYTHEELTKHIRNPSK---VGHDMLEIMIDDNAED----------------LVLVPFVKQLVPVVDIEGGEILIDPPEGLLDVAKVNLIVR-RGAPRLFLRAAEGTMLESEE 276          
BLAST of Ggra5659.t1 vs. uniprot
Match: A0A7R9U2Y6 (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2Y6_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.520e-25
Identity = 84/248 (33.87%), Postives = 124/248 (50.00%), Query Frame = 0
Query:   12 LDQWAPENLGFLHVATITGAHGVKGELKARTEGDFNRVRLSAKKNAQQRYILLPGRRYPRPVNLTAGRQASQKNAWIVKLDGFGNRESITKLRGARLYVRES---DRPALERG-EFMVADLVGCRVSLPLNLNDGDPWYTSEANGQPNEIRAGDPIGVVDSVITRQDLCEASGSGSSGASLASDLLEIAM---FDVPDQHVHSGLYNEPPPVEARRVLVPFVNQIVPVVDISNAVIVLSPPEGLLDIA 252
            +D + P   G+++V  + GAHG++G ++ R + DF   R+  K     R++  P RR PR V L  G+   + + +IVKL G  NR    +L+G  LYV E    +  AL+   E+ V DLVG RV                       ++ G+ +G V  V+  +D+C  S  G     L +DLLE+ +    +  +  V +  Y        RR+LVPFVN IVP V IS  VI + PPEGLL++A
Sbjct:  178 VDPYDPSTFGYIYVGYVMGAHGIQGHVRIRVDSDFASDRVCKK---GVRHLKDPSRRMPRAVLLEGGK-LQRDDVYIVKLSGVRNRNDAARLQGWSLYVLEEVAREPGALDADDEYFVEDLVGLRVL---------------------HVKTGEYVGSVAGVVASEDVCTVSVEG-----LGNDLLELELPPLKNYANSPVTADAYKSGFGWRERRLLVPFVNAIVPDVRISEGVIYIDPPEGLLEMA 395          
BLAST of Ggra5659.t1 vs. uniprot
Match: A0A834ZKV5 (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834ZKV5_9MAGN)

HSP 1 Score: 108 bits (270), Expect = 3.450e-24
Identity = 80/251 (31.87%), Postives = 121/251 (48.21%), Query Frame = 0
Query:   22 FLHVATITGAHGVKGELKARTEGDFNRVRLSAKKNAQQRYIL--LPGRRYPRPVNLTAGRQASQKNAWIVKLDGFGNRESITKLRGARLYVRESDRPALERGEFMVADLVGCRVSLPLNLNDGDPWYTSEANGQPNEIRAGDPIGVVDSVITRQDLCEASGSGSSGASLASDLLEIAMFDVPDQHVHSGLYNEPPPVEARRVLVPFVNQIVPVVDISNAVIVLSPPEGLLDIAIVNRKRKERPARGLLMPA 270
            F+ +  I   HG++GEL+ +   DF  +R +      +R++   + G+   R V L  GR  S + +WIV + G    E   +L G+ L VRE DRPALE GEF + DLVG RV L                        G+P+G V +V             +SGAS   DLL++ +      +  +G       V A  V VPFV  IVP VD++   + ++PP+GLL++ + +  R ++  R L+ PA
Sbjct:   78 FIEIGYICNVHGLQGELRVKPSTDFPELRFA---EPGRRWLRERISGKETVREVELVEGRGHSGQKSWIVSIGGIDTVEEAKQLVGSTLLVREEDRPALEEGEFYIPDLVGMRVILK---------------------DTGEPVGTVVNVF------------NSGAS---DLLQVMLNSDEKMNDGAGSSKSETGVSAPLVWVPFVEAIVPDVDMNRREMQITPPKGLLELNLRSDWRSKKERRQLVRPA 289          
BLAST of Ggra5659.t1 vs. uniprot
Match: K9YIL0 (Ribosome maturation factor RimM n=1 Tax=Cyanobacterium stanieri (strain ATCC 29140 / PCC 7202) TaxID=292563 RepID=K9YIL0_CYASC)

HSP 1 Score: 103 bits (257), Expect = 3.500e-23
Identity = 80/241 (33.20%), Postives = 112/241 (46.47%), Query Frame = 0
Query:   22 FLHVATITGAHGVKGELKARTEGDFNRVRLSAKKNAQQRYILLPGRRYPRPVNLTAGRQASQKNAWIVKLDGFGNRESITKLRGARLYVRESDRPALERGEFMVADLVGCRVSLPLNLNDGDPWYTSEANGQPNEIRAGDPIGVVDSVITRQDLCEASGSGSSGASLASDLLEIAMFDVP--DQHVHSGLYN----------EPPPVEARRVLVPFVNQIVPVVDISNAVIVLSPPEGLLD 250
             + + TI GA G+KGEL+     DF        +N  QR++ +     P+ V L  GR+   KN ++VKL+   +R     L+GA L+V +SDRP LE GE+ VADL+G                  E   Q N    G+ IGVV  V                 S A ++LE+ +   P  +      L N          +P   +A  VL+PFV +IVP+VDI N  I ++PP GLLD
Sbjct:    6 LIEIGTIVGASGLKGELRVNITTDFP----ERFENPGQRWLTINNNSSPQIVELLRGRKVPGKNIYVVKLENVNDRTQAENLKGATLWVDKSDRPYLEEGEYHVADLIGM-----------------EVYNQQN----GENIGVVVDVF----------------SAAHEILEVKLHKQPLVETKPPVNLENISRISRRKKVKPKKTKAITVLIPFVAEIVPIVDIDNQKIEINPPTGLLD 205          
The following BLAST results are available for this feature:
BLAST of Ggra5659.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IU964.020e-14977.01Putative 16S rRNA-processing protein RimM n=1 Tax=... [more]
A0A5J4Z6X11.050e-5140.30Putative 16S rRNA-processing protein RimM n=1 Tax=... [more]
A0A1X6NZ834.990e-3836.14RimM domain-containing protein n=1 Tax=Porphyra um... [more]
I2CPH43.190e-3034.2716s rrna-processing protein (Fragment) n=1 Tax=Nan... [more]
A0A7J7IFE57.690e-2733.82RimM domain-containing protein n=1 Tax=Cyanidiococ... [more]
ribosome maturation factor RimM n=1 Tax=Microcoleus sp. FACHB-831 TaxID=2692827 RepID=UPI001682E3791.660e-2635.62ribosome maturation factor RimM n=1 Tax=Microcoleu... [more]
A0A7S0G5Z68.410e-2634.39Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7R9U2Y61.520e-2533.87Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A834ZKV53.450e-2431.87Uncharacterized protein n=1 Tax=Tetracentron sinen... [more]
K9YIL03.500e-2333.20Ribosome maturation factor RimM n=1 Tax=Cyanobacte... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036976RimM, N-terminal domain superfamilyGENE3D2.40.30.60RimMcoord: 22..117
e-value: 1.0E-15
score: 59.6
NoneNo IPR availableGENE3D2.30.30.240coord: 118..253
e-value: 6.4E-10
score: 40.9
NoneNo IPR availablePANTHERPTHR33692RIBOSOME MATURATION FACTOR RIMMcoord: 18..251
IPR002676RimM, N-terminalPFAMPF01782RimMcoord: 25..114
e-value: 1.2E-13
score: 51.1
IPR01196116S rRNA processing protein RimMHAMAPMF_00014Ribosome_mat_RimMcoord: 22..248
score: 19.173553
IPR009000Translation protein, beta-barrel domain superfamilySUPERFAMILY50447Translation proteinscoord: 23..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1280930..1281775 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5659.t1Ggra5659.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 1280930..1281775 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5659.t1 ID=Ggra5659.t1|Name=Ggra5659.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=282bp
MREHKHGTDPRLDQWAPENLGFLHVATITGAHGVKGELKARTEGDFNRVR
LSAKKNAQQRYILLPGRRYPRPVNLTAGRQASQKNAWIVKLDGFGNRESI
TKLRGARLYVRESDRPALERGEFMVADLVGCRVSLPLNLNDGDPWYTSEA
NGQPNEIRAGDPIGVVDSVITRQDLCEASGSGSSGASLASDLLEIAMFDV
PDQHVHSGLYNEPPPVEARRVLVPFVNQIVPVVDISNAVIVLSPPEGLLD
IAIVNRKRKERPARGLLMPAGQNTVINANDV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036976RimM_N_sf
IPR002676RimM_N
IPR01196116S_RimM
IPR009000Transl_B-barrel_sf