Ggra5659.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5659.t1
Unique NameGgra5659.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length282
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1280930..1281775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD11666
Preferred nameUAP1L1
PFAMsPRC,RimM,UDPGP
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00972,ko:K01230,ko:K02860,ko:K05642
KEGG TC3.A.1.211
KEGG ReactionR00416,R05982,R06722
KEGG Pathwayko00510,ko00513,ko00520,ko01100,ko01130,ko02010,ko04141,ko04142,map00510,map00513,map00520,map01100,map01130,map02010,map04141,map04142
KEGG ModuleM00073,M00074,M00361,M00362
GOsGO:0001700,GO:0001838,GO:0002009,GO:0003674,GO:0003824,GO:0003977,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006022,GO:0006023,GO:0006030,GO:0006031,GO:0006034,GO:0006035,GO:0006040,GO:0006047,GO:0006048,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0007391,GO:0007399,GO:0007413,GO:0007417,GO:0007424,GO:0008037,GO:0008038,GO:0008150,GO:0008152,GO:0008362,GO:0009058,GO:0009059,GO:0009225,GO:0009226,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010559,GO:0010560,GO:0010604,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0016043,GO:0016331,GO:0016740,GO:0016772,GO:0016779,GO:0017144,GO:0018130,GO:0019222,GO:0019438,GO:0022008,GO:0022603,GO:0022604,GO:0030030,GO:0030154,GO:0030182,GO:0030198,GO:0031175,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031346,GO:0031399,GO:0031401,GO:0032101,GO:0032103,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032879,GO:0034641,GO:0034654,GO:0035148,GO:0035150,GO:0035151,GO:0035152,GO:0035239,GO:0035295,GO:0040003,GO:0040012,GO:0040017,GO:0042335,GO:0043062,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046349,GO:0046483,GO:0048468,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048598,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050789,GO:0050793,GO:0050794,GO:0050920,GO:0050921,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051270,GO:0051272,GO:0051960,GO:0051962,GO:0055086,GO:0060049,GO:0060050,GO:0060255,GO:0060284,GO:0060429,GO:0060541,GO:0060562,GO:0061564,GO:0065007,GO:0065008,GO:0070569,GO:0071704,GO:0071840,GO:0072175,GO:0080090,GO:0090066,GO:0106030,GO:0120035,GO:0120036,GO:1901071,GO:1901073,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902667,GO:1902669,GO:1903018,GO:1903020,GO:2000026,GO:2000112
Evalue9.72e-29
EggNOG OGsCOG4284@1|root,KOG2388@2759|Eukaryota
EC2.7.7.23,2.7.7.83,3.2.1.113
DescriptionUDP-N-acetylglucosamine diphosphorylase activity
COG categoryG
CAZyGH47
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03009,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5659Ggra5659Gracilaria gracilis GNS1m malegenetig00000842_pilon 1280930..1281775 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5659.t1.start1Ggra5659.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1280930..1280932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5659.t1.CDS1Ggra5659.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1280930..1281775 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5659.t1.exon1Ggra5659.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1280930..1281775 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5659.t1.stop1Ggra5659.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1281773..1281775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5659.t1Ggra5659.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1280930..1281775 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5659.t1 ID=Ggra5659.t1|Name=Ggra5659.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=282bp
MREHKHGTDPRLDQWAPENLGFLHVATITGAHGVKGELKARTEGDFNRVR
LSAKKNAQQRYILLPGRRYPRPVNLTAGRQASQKNAWIVKLDGFGNRESI
TKLRGARLYVRESDRPALERGEFMVADLVGCRVSLPLNLNDGDPWYTSEA
NGQPNEIRAGDPIGVVDSVITRQDLCEASGSGSSGASLASDLLEIAMFDV
PDQHVHSGLYNEPPPVEARRVLVPFVNQIVPVVDISNAVIVLSPPEGLLD
IAIVNRKRKERPARGLLMPAGQNTVINANDV*
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spliced messenger RNA

>Ggra5659.t1 ID=Ggra5659.t1|Name=Ggra5659.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00000842_pilon:1280930..1281775+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGAACACAAGCACGGAACGGACCCCCGCTTGGATCAGTGGGCGCC
AGAAAACCTCGGTTTTCTTCACGTCGCGACCATAACTGGAGCACATGGTG
TGAAGGGAGAACTGAAGGCTCGAACAGAAGGGGATTTTAATCGTGTTCGC
CTTTCAGCTAAAAAGAACGCACAGCAAAGATATATTCTGTTGCCAGGTCG
CCGATATCCTAGACCAGTAAACCTGACTGCCGGACGTCAAGCATCACAGA
AAAACGCATGGATCGTTAAACTGGATGGTTTTGGAAACAGGGAAAGTATA
ACCAAACTCAGAGGTGCACGACTGTATGTGCGTGAATCCGACAGACCTGC
ATTGGAGCGGGGAGAATTCATGGTGGCCGACCTCGTCGGATGTCGAGTTT
CACTCCCTTTAAATCTTAACGATGGTGATCCTTGGTACACAAGTGAGGCT
AACGGACAGCCCAACGAAATACGCGCTGGTGACCCCATTGGGGTGGTCGA
CAGTGTTATCACACGCCAAGACTTATGCGAGGCATCCGGAAGTGGTTCAA
GCGGAGCCTCATTGGCATCCGACCTTCTAGAAATTGCCATGTTTGATGTA
CCCGATCAACATGTTCACAGCGGACTCTACAACGAGCCGCCACCAGTTGA
AGCACGTAGGGTGTTAGTACCGTTCGTGAACCAAATTGTGCCAGTAGTTG
ATATCAGTAATGCTGTTATTGTGTTAAGTCCTCCGGAGGGGTTATTGGAC
ATTGCTATTGTGAACCGGAAGAGAAAAGAAAGGCCAGCCAGGGGATTGCT
GATGCCGGCCGGTCAAAACACTGTGATAAATGCAAATGATGTATAA
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protein sequence of Ggra5659.t1

>Ggra5659.t1 ID=Ggra5659.t1|Name=Ggra5659.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=282bp
MREHKHGTDPRLDQWAPENLGFLHVATITGAHGVKGELKARTEGDFNRVR
LSAKKNAQQRYILLPGRRYPRPVNLTAGRQASQKNAWIVKLDGFGNRESI
TKLRGARLYVRESDRPALERGEFMVADLVGCRVSLPLNLNDGDPWYTSEA
NGQPNEIRAGDPIGVVDSVITRQDLCEASGSGSSGASLASDLLEIAMFDV
PDQHVHSGLYNEPPPVEARRVLVPFVNQIVPVVDISNAVIVLSPPEGLLD
IAIVNRKRKERPARGLLMPAGQNTVINANDV*
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mRNA from alignment at tig00000842_pilon:1280930..1281775+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5659.t1 ID=Ggra5659.t1|Name=Ggra5659.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00000842_pilon:1280930..1281775+ (Gracilaria gracilis GNS1m male)
ATGCGAGAACACAAGCACGGAACGGACCCCCGCTTGGATCAGTGGGCGCC
AGAAAACCTCGGTTTTCTTCACGTCGCGACCATAACTGGAGCACATGGTG
TGAAGGGAGAACTGAAGGCTCGAACAGAAGGGGATTTTAATCGTGTTCGC
CTTTCAGCTAAAAAGAACGCACAGCAAAGATATATTCTGTTGCCAGGTCG
CCGATATCCTAGACCAGTAAACCTGACTGCCGGACGTCAAGCATCACAGA
AAAACGCATGGATCGTTAAACTGGATGGTTTTGGAAACAGGGAAAGTATA
ACCAAACTCAGAGGTGCACGACTGTATGTGCGTGAATCCGACAGACCTGC
ATTGGAGCGGGGAGAATTCATGGTGGCCGACCTCGTCGGATGTCGAGTTT
CACTCCCTTTAAATCTTAACGATGGTGATCCTTGGTACACAAGTGAGGCT
AACGGACAGCCCAACGAAATACGCGCTGGTGACCCCATTGGGGTGGTCGA
CAGTGTTATCACACGCCAAGACTTATGCGAGGCATCCGGAAGTGGTTCAA
GCGGAGCCTCATTGGCATCCGACCTTCTAGAAATTGCCATGTTTGATGTA
CCCGATCAACATGTTCACAGCGGACTCTACAACGAGCCGCCACCAGTTGA
AGCACGTAGGGTGTTAGTACCGTTCGTGAACCAAATTGTGCCAGTAGTTG
ATATCAGTAATGCTGTTATTGTGTTAAGTCCTCCGGAGGGGTTATTGGAC
ATTGCTATTGTGAACCGGAAGAGAAAAGAAAGGCCAGCCAGGGGATTGCT
GATGCCGGCCGGTCAAAACACTGTGATAAATGCAAATGATGTATAA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1280930..1281775+

>Ggra5659.t1 ID=Ggra5659.t1|Name=Ggra5659.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=846bp|location=Sequence derived from alignment at tig00000842_pilon:1280930..1281775+ (Gracilaria gracilis GNS1m male)
ATGCGAGAACACAAGCACGGAACGGACCCCCGCTTGGATCAGTGGGCGCC
AGAAAACCTCGGTTTTCTTCACGTCGCGACCATAACTGGAGCACATGGTG
TGAAGGGAGAACTGAAGGCTCGAACAGAAGGGGATTTTAATCGTGTTCGC
CTTTCAGCTAAAAAGAACGCACAGCAAAGATATATTCTGTTGCCAGGTCG
CCGATATCCTAGACCAGTAAACCTGACTGCCGGACGTCAAGCATCACAGA
AAAACGCATGGATCGTTAAACTGGATGGTTTTGGAAACAGGGAAAGTATA
ACCAAACTCAGAGGTGCACGACTGTATGTGCGTGAATCCGACAGACCTGC
ATTGGAGCGGGGAGAATTCATGGTGGCCGACCTCGTCGGATGTCGAGTTT
CACTCCCTTTAAATCTTAACGATGGTGATCCTTGGTACACAAGTGAGGCT
AACGGACAGCCCAACGAAATACGCGCTGGTGACCCCATTGGGGTGGTCGA
CAGTGTTATCACACGCCAAGACTTATGCGAGGCATCCGGAAGTGGTTCAA
GCGGAGCCTCATTGGCATCCGACCTTCTAGAAATTGCCATGTTTGATGTA
CCCGATCAACATGTTCACAGCGGACTCTACAACGAGCCGCCACCAGTTGA
AGCACGTAGGGTGTTAGTACCGTTCGTGAACCAAATTGTGCCAGTAGTTG
ATATCAGTAATGCTGTTATTGTGTTAAGTCCTCCGGAGGGGTTATTGGAC
ATTGCTATTGTGAACCGGAAGAGAAAAGAAAGGCCAGCCAGGGGATTGCT
GATGCCGGCCGGTCAAAACACTGTGATAAATGCAAATGATGTATAA
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