Ggra5645.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5645.t1
Unique NameGgra5645.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length375
Homology
BLAST of Ggra5645.t1 vs. uniprot
Match: A0A2V3IUB0 (Telomere repeat-binding factor 5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUB0_9FLOR)

HSP 1 Score: 279 bits (713), Expect = 6.510e-88
Identity = 190/377 (50.40%), Postives = 236/377 (62.60%), Query Frame = 0
Query:    1 MHAKPSRPRKRARASTRRKTVRWSTREVEALLAGVRTYGVGKWARILRHSPVFNGVRTSVDLKDKWRNLTSPVRAAALAGEMPPAPDPPHTPSLEQSQPLDALSPVSTPHLASKPPADDAESPEHHTSPPHSSPSPTPTVSFSEMPPVTPELVTSPPFVP-PNYNPIAPYAMTHSLYHSAAALAADYWRRVNQEAVYGMAPYSSAFPYVKLSQFPLSDXXXXXXXXXXXL-AMQQPFFNQYNIALAHMFNRVDRPTHGHTLVPHPGVAPVSTEPSATETESYPEEECLLRVSNSADEPQNADPKVSS-----SAVTL----DVAFTSETPQAPAEDADDTTVEPTLYDVEERKTST--SGDSDQSMLPNDPLFVPIQ 364
            MHAKP+R RKRARASTRRKTVRWS REVEALLAGVRT+GVGKWARILRHSPVFNGVRTSVDLKDKWRNLTSPVRAAALAGE  P+P  P TP  E   P  +    ST    ++PP  DA   EH ++P   SP P P +  SE  P+  +L     F+P P Y PI PY++T ++YHSAAA AADYWRR + EA+YGM  +SS FPYVK +    +D XXXXXXXXXX+  M  P +N YN A+AHM +RVD  T  HT  P    + + +EP A+E +S   ++     +N+     NA    S      +A T     + A T  TP      A     EP   D+ + K ++  +G+ D S+L  + LF+P+Q
Sbjct:    1 MHAKPARTRKRARASTRRKTVRWSNREVEALLAGVRTHGVGKWARILRHSPVFNGVRTSVDLKDKWRNLTSPVRAAALAGEAAPSPQVPQTPPDELPPPPTSARSHSTSEPPTRPPLFDAAD-EHASTPQPDSPKPLP-IPVSEPTPIAADLPAPSSFLPTPPYPPITPYSVTQNIYHSAAAFAADYWRRFSHEAMYGMGTFSSIFPYVKHTPLLHTDDXXXXXXXXXXIEVMNPPVYNPYNYAMAHMLSRVDHTTFAHTFPPQTPNSTIPSEPHASEGDSLQADDTNSDNANNLSVGHNAHAATSDFLCAENATTSRPHHEDAHTEHTPPIDRASA----AEPAQCDIADGKNTSCSTGNLDHSILAQEQLFMPMQ 371          
BLAST of Ggra5645.t1 vs. uniprot
Match: A0A7S2TXX0 (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TXX0_9EUKA)

HSP 1 Score: 65.9 bits (159), Expect = 1.170e-8
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 0
Query:   17 RRKTVRWSTREVEALLAGVRTYGVGKWARILR-HSPVFNGVRTSVDLKDKWRNLT 70
            RRK + WST E   L  GVR +GVGKWA+IL+ ++P+F   RTSVDLKDKWRN++
Sbjct:   53 RRKRIFWSTCEETHLRLGVREFGVGKWAKILKKYAPIFKN-RTSVDLKDKWRNIS 106          
BLAST of Ggra5645.t1 vs. uniprot
Match: I3S1Z1 (Uncharacterized protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3S1Z1_LOTJA)

HSP 1 Score: 60.1 bits (144), Expect = 4.260e-8
Identity = 33/54 (61.11%), Postives = 35/54 (64.81%), Query Frame = 0
Query:   17 RRKTVRWSTREVEALLAGVRTYGVGKWARILR-HSPVFNGVRTSVDLKDKWRNL 69
            RR T RW   E E LLAGV  +G G W  IL  H  VF G RTSVDLKDKWRN+
Sbjct:   20 RRITKRWCQLEKETLLAGVNKFGEGNWTFILSTHKDVFKG-RTSVDLKDKWRNM 72          
BLAST of Ggra5645.t1 vs. uniprot
Match: A0A178WBS2 (Uncharacterized protein n=2 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178WBS2_ARATH)

HSP 1 Score: 61.6 bits (148), Expect = 6.900e-8
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 0
Query:   21 VRWSTREVEALLAGVRTYGVGKWARILRHSPVFNGV--RTSVDLKDKWRNLTSPVRAAALAGEMPPA 85
            ++W+  E EALLAG+R +G GKW  ILR     + +  R+++DLKDKWRNL+ P    +L  +  PA
Sbjct:    6 LKWTAEEEEALLAGIRKHGPGKWKNILRDPEFADQLIHRSNIDLKDKWRNLSVPPGTQSLTNKARPA 72          
BLAST of Ggra5645.t1 vs. uniprot
Match: A0A0L0T4V7 (Uncharacterized protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0T4V7_ALLM3)

HSP 1 Score: 63.2 bits (152), Expect = 2.980e-7
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 0
Query:   12 ARASTRRKTVRWSTREVEALLAGVRTYGVGKWARILRHSPV-FNGVRTSVDLKDKWRNLTS 71
            AR + RR+ +RWS  E  AL+AGV  YG+G WA+IL    + FN  RT++DLKDKWR +T+
Sbjct:   21 ARPAPRRR-IRWSKDEEAALIAGVEKYGIGSWAQILADPDLHFNAQRTNIDLKDKWRVITT 80          
BLAST of Ggra5645.t1 vs. uniprot
Match: A0A0L0T8I6 (Uncharacterized protein n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0T8I6_ALLM3)

HSP 1 Score: 63.2 bits (152), Expect = 3.010e-7
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 0
Query:   12 ARASTRRKTVRWSTREVEALLAGVRTYGVGKWARILRHSPV-FNGVRTSVDLKDKWRNLTS 71
            AR + RR+ +RWS  E  AL+AGV  YG+G WA+IL    + FN  RT++DLKDKWR +T+
Sbjct:   24 ARPAPRRR-IRWSKDEEAALIAGVEKYGIGSWAQILADPDLHFNAQRTNIDLKDKWRVITT 83          
BLAST of Ggra5645.t1 vs. uniprot
Match: A0A078FT77 (BnaC08g21430D protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A078FT77_BRANA)

HSP 1 Score: 58.2 bits (139), Expect = 3.650e-7
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 0
Query:   23 WSTREVEALLAGVRTYGVGKWARILRHSPVFNGV--RTSVDLKDKWRNLTS 71
            W+ +EV AL AGVR YG+GKW  IL  S     +  R++VDLKDKWRN+++
Sbjct:    8 WTPKEVTALRAGVRAYGIGKWRGILSDSKFGRALKARSNVDLKDKWRNISA 58          
BLAST of Ggra5645.t1 vs. uniprot
Match: A0A7S1GCC2 (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GCC2_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.830e-7
Identity = 35/67 (52.24%), Postives = 41/67 (61.19%), Query Frame = 0
Query:    5 PSRPRKRARASTRRKTVRWSTREVEALLAGVRTYGVGKWARILRHSPVFNGV-RTSVDLKDKWRNLT 70
            PS   +RA  + R   V WS  EV+AL  GV+ YG GKW +I  H      V RT+VDLKDKWRNLT
Sbjct:  127 PSGTPRRAAQAKRGGRVFWSDAEVDALREGVQMYGAGKWRKIHTHFFARGAVPRTTVDLKDKWRNLT 193          
BLAST of Ggra5645.t1 vs. uniprot
Match: A0A2V3J0U8 (Telomere repeat-binding factor 5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0U8_9FLOR)

HSP 1 Score: 63.2 bits (152), Expect = 4.540e-7
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 0
Query:    6 SRPRKRARASTRRKTVRWSTREVEALLAGVRTYGVGKWARILR-HSPVFNGVRTSVDLKDKWRNLT 70
            +RP      S R K ++W+  EV+AL +GV+ +G G+WA ILR ++  F+ VR SVDLKDKWRNL+
Sbjct:  105 TRPNVSQNKSRRHKRIKWTEGEVQALRSGVQKHGEGRWAVILRENADRFHPVRISVDLKDKWRNLS 170          
BLAST of Ggra5645.t1 vs. uniprot
Match: TRB5 (Telomere repeat-binding factor 5 n=5 Tax=Arabidopsis thaliana TaxID=3702 RepID=TRB5_ARATH)

HSP 1 Score: 61.6 bits (148), Expect = 4.620e-7
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 0
Query:   21 VRWSTREVEALLAGVRTYGVGKWARILRHSPVFNGV--RTSVDLKDKWRNLTSPVRAAALAGEMPPA 85
            ++W+  E EALLAG+R +G GKW  ILR     + +  R+++DLKDKWRNL+ P    +L  +  PA
Sbjct:    6 LKWTAEEEEALLAGIRKHGPGKWKNILRDPEFADQLIHRSNIDLKDKWRNLSVPPGTQSLTNKARPA 72          
The following BLAST results are available for this feature:
BLAST of Ggra5645.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IUB06.510e-8850.40Telomere repeat-binding factor 5 n=1 Tax=Gracilari... [more]
A0A7S2TXX01.170e-860.00Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
I3S1Z14.260e-861.11Uncharacterized protein n=1 Tax=Lotus japonicus Ta... [more]
A0A178WBS26.900e-844.78Uncharacterized protein n=2 Tax=Arabidopsis thalia... [more]
A0A0L0T4V72.980e-752.46Uncharacterized protein n=1 Tax=Allomyces macrogyn... [more]
A0A0L0T8I63.010e-752.46Uncharacterized protein n=2 Tax=Allomyces macrogyn... [more]
A0A078FT773.650e-752.94BnaC08g21430D protein n=1 Tax=Brassica napus TaxID... [more]
A0A7S1GCC23.830e-752.24Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A2V3J0U84.540e-750.00Telomere repeat-binding factor 5 n=1 Tax=Gracilari... [more]
TRB54.620e-744.78Telomere repeat-binding factor 5 n=5 Tax=Arabidops... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 19..72
e-value: 3.6E-10
score: 49.8
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 15..70
score: 7.955902
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 21..69
e-value: 7.4E-9
score: 35.7
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 15..74
score: 13.841099
NoneNo IPR availableGENE3D1.10.246.220coord: 9..97
e-value: 6.2E-19
score: 69.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 254..356
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 291..316
NoneNo IPR availablePANTHERPTHR46993MYB TRANSCRIPTION FACTORcoord: 4..70
NoneNo IPR availableCDDcd11660SANT_TRFcoord: 21..70
e-value: 1.20762E-20
score: 82.2299
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 17..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1236506..1237630 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5645.t1Ggra5645.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 1236506..1237630 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5645.t1 ID=Ggra5645.t1|Name=Ggra5645.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=375bp
MHAKPSRPRKRARASTRRKTVRWSTREVEALLAGVRTYGVGKWARILRHS
PVFNGVRTSVDLKDKWRNLTSPVRAAALAGEMPPAPDPPHTPSLEQSQPL
DALSPVSTPHLASKPPADDAESPEHHTSPPHSSPSPTPTVSFSEMPPVTP
ELVTSPPFVPPNYNPIAPYAMTHSLYHSAAALAADYWRRVNQEAVYGMAP
YSSAFPYVKLSQFPLSDDDDDDDDDDDDLAMQQPFFNQYNIALAHMFNRV
DRPTHGHTLVPHPGVAPVSTEPSATETESYPEEECLLRVSNSADEPQNAD
PKVSSSAVTLDVAFTSETPQAPAEDADDTTVEPTLYDVEERKTSTSGDSD
QSMLPNDPLFVPIQPLATTMGSIQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR017930Myb_dom
IPR009057Homeobox-like_sf