Ggra5645.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5645.t1
Unique NameGgra5645.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length375
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1236506..1237630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4081.Solyc06g082510.2.1
PFAMsDAO,Myb_DNA-binding
Max annot lvl35493|Streptophyta
KEGG koko:K11111
KEGG ModuleM00424
Evalue2.87e-09
EggNOG OGs2CMZ8@1|root,2QSW7@2759|Eukaryota,37R4K@33090|Viridiplantae,3GFJJ@35493|Streptophyta,44NE4@71274|asterids
DescriptionSANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
COG categoryK
BRITEko00000,ko00002,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5645Ggra5645Gracilaria gracilis GNS1m malegenetig00000842_pilon 1236506..1237630 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5645.t1.stop1Ggra5645.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1236506..1236508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5645.t1.CDS1Ggra5645.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1236506..1237630 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5645.t1.exon1Ggra5645.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1236506..1237630 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5645.t1.start1Ggra5645.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1237628..1237630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5645.t1Ggra5645.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1236506..1237630 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5645.t1 ID=Ggra5645.t1|Name=Ggra5645.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=375bp
MHAKPSRPRKRARASTRRKTVRWSTREVEALLAGVRTYGVGKWARILRHS
PVFNGVRTSVDLKDKWRNLTSPVRAAALAGEMPPAPDPPHTPSLEQSQPL
DALSPVSTPHLASKPPADDAESPEHHTSPPHSSPSPTPTVSFSEMPPVTP
ELVTSPPFVPPNYNPIAPYAMTHSLYHSAAALAADYWRRVNQEAVYGMAP
YSSAFPYVKLSQFPLSDDDDDDDDDDDDLAMQQPFFNQYNIALAHMFNRV
DRPTHGHTLVPHPGVAPVSTEPSATETESYPEEECLLRVSNSADEPQNAD
PKVSSSAVTLDVAFTSETPQAPAEDADDTTVEPTLYDVEERKTSTSGDSD
QSMLPNDPLFVPIQPLATTMGSIQ*
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spliced messenger RNA

>Ggra5645.t1 ID=Ggra5645.t1|Name=Ggra5645.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1125bp|location=Sequence derived from alignment at tig00000842_pilon:1236506..1237630- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGCCAAGCCGTCGCGCCCCCGTAAGAGGGCGCGCGCCTCCACGCG
CCGCAAGACCGTGCGCTGGTCCACGCGAGAGGTGGAGGCGCTGCTCGCCG
GAGTTCGCACCTATGGCGTCGGCAAGTGGGCGCGCATACTGCGCCATTCC
CCCGTCTTCAATGGCGTCAGAACATCCGTCGATCTCAAGGACAAGTGGCG
AAATCTTACCTCGCCCGTGCGTGCGGCCGCGTTGGCCGGAGAAATGCCTC
CAGCTCCAGACCCCCCTCACACCCCATCTCTGGAACAATCGCAGCCGCTG
GACGCCCTCAGCCCCGTTTCCACTCCGCATCTTGCTTCCAAACCGCCCGC
TGATGATGCCGAGTCCCCTGAGCACCATACTTCCCCACCGCACTCCTCCC
CATCGCCCACTCCAACTGTGTCGTTCTCTGAAATGCCACCAGTCACACCG
GAGCTTGTGACGTCGCCGCCTTTTGTGCCTCCCAACTACAATCCAATCGC
CCCTTATGCGATGACTCACAGTCTATATCACTCTGCTGCTGCGCTGGCGG
CCGATTATTGGCGACGAGTCAATCAAGAGGCCGTGTACGGAATGGCTCCT
TACTCTTCAGCCTTTCCGTATGTGAAGCTATCTCAGTTCCCTCTCAGTGA
TGACGATGATGACGACGACGATGATGATGACGATTTAGCCATGCAACAGC
CATTTTTCAACCAATATAACATAGCACTTGCACACATGTTTAATAGAGTA
GACCGTCCCACCCATGGTCACACTCTCGTTCCGCATCCAGGCGTTGCTCC
AGTTTCCACTGAACCATCTGCCACTGAAACTGAGTCCTATCCCGAAGAGG
AGTGTCTGCTGCGAGTTTCAAACAGTGCAGATGAACCACAAAATGCCGAC
CCAAAGGTGTCGTCATCAGCAGTCACGTTGGATGTGGCCTTCACTTCTGA
AACCCCCCAAGCGCCTGCAGAGGATGCCGATGATACCACCGTTGAACCAA
CTCTGTACGATGTGGAAGAGAGAAAGACCTCCACGTCCGGCGACTCCGAT
CAGTCTATGCTGCCAAATGATCCGTTGTTTGTTCCCATTCAACCTTTGGC
TACTACCATGGGCTCAATTCAGTGA
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protein sequence of Ggra5645.t1

>Ggra5645.t1 ID=Ggra5645.t1|Name=Ggra5645.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=375bp
MHAKPSRPRKRARASTRRKTVRWSTREVEALLAGVRTYGVGKWARILRHS
PVFNGVRTSVDLKDKWRNLTSPVRAAALAGEMPPAPDPPHTPSLEQSQPL
DALSPVSTPHLASKPPADDAESPEHHTSPPHSSPSPTPTVSFSEMPPVTP
ELVTSPPFVPPNYNPIAPYAMTHSLYHSAAALAADYWRRVNQEAVYGMAP
YSSAFPYVKLSQFPLSDDDDDDDDDDDDLAMQQPFFNQYNIALAHMFNRV
DRPTHGHTLVPHPGVAPVSTEPSATETESYPEEECLLRVSNSADEPQNAD
PKVSSSAVTLDVAFTSETPQAPAEDADDTTVEPTLYDVEERKTSTSGDSD
QSMLPNDPLFVPIQPLATTMGSIQ*
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mRNA from alignment at tig00000842_pilon:1236506..1237630-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5645.t1 ID=Ggra5645.t1|Name=Ggra5645.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1125bp|location=Sequence derived from alignment at tig00000842_pilon:1236506..1237630- (Gracilaria gracilis GNS1m male)
ATGCACGCCAAGCCGTCGCGCCCCCGTAAGAGGGCGCGCGCCTCCACGCG
CCGCAAGACCGTGCGCTGGTCCACGCGAGAGGTGGAGGCGCTGCTCGCCG
GAGTTCGCACCTATGGCGTCGGCAAGTGGGCGCGCATACTGCGCCATTCC
CCCGTCTTCAATGGCGTCAGAACATCCGTCGATCTCAAGGACAAGTGGCG
AAATCTTACCTCGCCCGTGCGTGCGGCCGCGTTGGCCGGAGAAATGCCTC
CAGCTCCAGACCCCCCTCACACCCCATCTCTGGAACAATCGCAGCCGCTG
GACGCCCTCAGCCCCGTTTCCACTCCGCATCTTGCTTCCAAACCGCCCGC
TGATGATGCCGAGTCCCCTGAGCACCATACTTCCCCACCGCACTCCTCCC
CATCGCCCACTCCAACTGTGTCGTTCTCTGAAATGCCACCAGTCACACCG
GAGCTTGTGACGTCGCCGCCTTTTGTGCCTCCCAACTACAATCCAATCGC
CCCTTATGCGATGACTCACAGTCTATATCACTCTGCTGCTGCGCTGGCGG
CCGATTATTGGCGACGAGTCAATCAAGAGGCCGTGTACGGAATGGCTCCT
TACTCTTCAGCCTTTCCGTATGTGAAGCTATCTCAGTTCCCTCTCAGTGA
TGACGATGATGACGACGACGATGATGATGACGATTTAGCCATGCAACAGC
CATTTTTCAACCAATATAACATAGCACTTGCACACATGTTTAATAGAGTA
GACCGTCCCACCCATGGTCACACTCTCGTTCCGCATCCAGGCGTTGCTCC
AGTTTCCACTGAACCATCTGCCACTGAAACTGAGTCCTATCCCGAAGAGG
AGTGTCTGCTGCGAGTTTCAAACAGTGCAGATGAACCACAAAATGCCGAC
CCAAAGGTGTCGTCATCAGCAGTCACGTTGGATGTGGCCTTCACTTCTGA
AACCCCCCAAGCGCCTGCAGAGGATGCCGATGATACCACCGTTGAACCAA
CTCTGTACGATGTGGAAGAGAGAAAGACCTCCACGTCCGGCGACTCCGAT
CAGTCTATGCTGCCAAATGATCCGTTGTTTGTTCCCATTCAACCTTTGGC
TACTACCATGGGCTCAATTCAGTGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1236506..1237630-

>Ggra5645.t1 ID=Ggra5645.t1|Name=Ggra5645.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1125bp|location=Sequence derived from alignment at tig00000842_pilon:1236506..1237630- (Gracilaria gracilis GNS1m male)
ATGCACGCCAAGCCGTCGCGCCCCCGTAAGAGGGCGCGCGCCTCCACGCG
CCGCAAGACCGTGCGCTGGTCCACGCGAGAGGTGGAGGCGCTGCTCGCCG
GAGTTCGCACCTATGGCGTCGGCAAGTGGGCGCGCATACTGCGCCATTCC
CCCGTCTTCAATGGCGTCAGAACATCCGTCGATCTCAAGGACAAGTGGCG
AAATCTTACCTCGCCCGTGCGTGCGGCCGCGTTGGCCGGAGAAATGCCTC
CAGCTCCAGACCCCCCTCACACCCCATCTCTGGAACAATCGCAGCCGCTG
GACGCCCTCAGCCCCGTTTCCACTCCGCATCTTGCTTCCAAACCGCCCGC
TGATGATGCCGAGTCCCCTGAGCACCATACTTCCCCACCGCACTCCTCCC
CATCGCCCACTCCAACTGTGTCGTTCTCTGAAATGCCACCAGTCACACCG
GAGCTTGTGACGTCGCCGCCTTTTGTGCCTCCCAACTACAATCCAATCGC
CCCTTATGCGATGACTCACAGTCTATATCACTCTGCTGCTGCGCTGGCGG
CCGATTATTGGCGACGAGTCAATCAAGAGGCCGTGTACGGAATGGCTCCT
TACTCTTCAGCCTTTCCGTATGTGAAGCTATCTCAGTTCCCTCTCAGTGA
TGACGATGATGACGACGACGATGATGATGACGATTTAGCCATGCAACAGC
CATTTTTCAACCAATATAACATAGCACTTGCACACATGTTTAATAGAGTA
GACCGTCCCACCCATGGTCACACTCTCGTTCCGCATCCAGGCGTTGCTCC
AGTTTCCACTGAACCATCTGCCACTGAAACTGAGTCCTATCCCGAAGAGG
AGTGTCTGCTGCGAGTTTCAAACAGTGCAGATGAACCACAAAATGCCGAC
CCAAAGGTGTCGTCATCAGCAGTCACGTTGGATGTGGCCTTCACTTCTGA
AACCCCCCAAGCGCCTGCAGAGGATGCCGATGATACCACCGTTGAACCAA
CTCTGTACGATGTGGAAGAGAGAAAGACCTCCACGTCCGGCGACTCCGAT
CAGTCTATGCTGCCAAATGATCCGTTGTTTGTTCCCATTCAACCTTTGGC
TACTACCATGGGCTCAATTCAGTGA
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